ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet32h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CCD37_HUMAN (Q494V2) Coiled-coil domain-containing protein 37 29 4.1
2CCD37_MACFA (Q4R8V8) Coiled-coil domain-containing protein 37 28 5.4

>CCD37_HUMAN (Q494V2) Coiled-coil domain-containing protein 37|
          Length = 611

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 116 RRDTPGPDPSVRPFHVSG 63
           + +  GPDPS  PFH+SG
Sbjct: 41  KNEEHGPDPSANPFHLSG 58



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>CCD37_MACFA (Q4R8V8) Coiled-coil domain-containing protein 37|
          Length = 608

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 101 GPDPSVRPFHVSG 63
           GPDPS  PFH+SG
Sbjct: 46  GPDPSANPFHLSG 58


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.131    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,250,290
Number of Sequences: 219361
Number of extensions: 313504
Number of successful extensions: 662
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 80,573,946
effective HSP length: 18
effective length of database: 76,625,448
effective search space used: 1839010752
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
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