ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet32f10 |
|---|---|
| Clone Library Name | barley_pub |
>PORA_WHEAT (Q41578) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 103 bits (258), Expect = 8e-23 Identities = 50/51 (98%), Positives = 50/51 (98%) Frame = -3 Query: 384 VVAEPSLAKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 232 VVAEPSL KSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA Sbjct: 338 VVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 388
>POR_AVESA (P15904) Protochlorophyllide reductase (EC 1.3.1.33) (PCR)| (NADPH-protochlorophyllide oxidoreductase) (POR) (Fragment) Length = 313 Score = 102 bits (254), Expect = 2e-22 Identities = 49/51 (96%), Positives = 49/51 (96%) Frame = -3 Query: 384 VVAEPSLAKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 232 VV EPSL KSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA Sbjct: 263 VVGEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 313
>PORA_HORVU (P13653) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 101 bits (252), Expect = 4e-22 Identities = 49/51 (96%), Positives = 49/51 (96%) Frame = -3 Query: 384 VVAEPSLAKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 232 VVAEP L KSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA Sbjct: 338 VVAEPVLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 388
>PORA_CUCSA (Q41249) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 97.8 bits (242), Expect = 5e-21 Identities = 47/51 (92%), Positives = 49/51 (96%) Frame = -3 Query: 384 VVAEPSLAKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 232 VV+EPSL KSGVYWSWNK+SASFENQLSQEASD EKARKVWELSEKLVGLA Sbjct: 348 VVSEPSLTKSGVYWSWNKNSASFENQLSQEASDAEKARKVWELSEKLVGLA 398
>POR_DAUCA (Q9SDT1) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 97.1 bits (240), Expect = 9e-21 Identities = 46/51 (90%), Positives = 49/51 (96%) Frame = -3 Query: 384 VVAEPSLAKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 232 VV+EPSL KSGVYWSWNKDSASFENQLS+EASD EKARKVWE+SEKLVGLA Sbjct: 348 VVSEPSLTKSGVYWSWNKDSASFENQLSEEASDVEKARKVWEVSEKLVGLA 398
>PORB_HORVU (Q42850) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 395 Score = 96.7 bits (239), Expect = 1e-20 Identities = 46/51 (90%), Positives = 49/51 (96%) Frame = -3 Query: 384 VVAEPSLAKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 232 VV+EPSL KSGVYWSWNK+SASFENQLS+EASD EKARKVWELSEKLVGLA Sbjct: 345 VVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 395
>PORA_ARATH (Q42536) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 405 Score = 94.4 bits (233), Expect = 6e-20 Identities = 45/51 (88%), Positives = 48/51 (94%) Frame = -3 Query: 384 VVAEPSLAKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 232 VVA+PSL KSGVYWSWNK SASFENQLSQEASD EKAR+VWE+SEKLVGLA Sbjct: 355 VVADPSLTKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVGLA 405
>POR_PEA (Q01289) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 399 Score = 92.4 bits (228), Expect = 2e-19 Identities = 44/51 (86%), Positives = 47/51 (92%) Frame = -3 Query: 384 VVAEPSLAKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 232 VV++PSL KSGVYWSWN SASFENQLSQEASD EKARKVWE+SEKLVGLA Sbjct: 349 VVSDPSLTKSGVYWSWNNASASFENQLSQEASDAEKARKVWEVSEKLVGLA 399
>PORB_ARATH (P21218) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 401 Score = 91.3 bits (225), Expect = 5e-19 Identities = 43/51 (84%), Positives = 47/51 (92%) Frame = -3 Query: 384 VVAEPSLAKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 232 VV++PSL KSGVYWSWN SASFENQLS+EASD EKARKVWE+SEKLVGLA Sbjct: 351 VVSDPSLTKSGVYWSWNNASASFENQLSEEASDVEKARKVWEISEKLVGLA 401
>PORC_ARATH (O48741) Protochlorophyllide reductase C, chloroplast precursor (EC| 1.3.1.33) (PCR C) (NADPH-protochlorophyllide oxidoreductase C) (POR C) Length = 401 Score = 88.6 bits (218), Expect = 3e-18 Identities = 40/51 (78%), Positives = 48/51 (94%) Frame = -3 Query: 384 VVAEPSLAKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 232 VV++PSL KSGVYWSWN +S+SFENQLS+EASD EKA+K+WE+SEKLVGLA Sbjct: 351 VVSDPSLGKSGVYWSWNNNSSSFENQLSKEASDAEKAKKLWEVSEKLVGLA 401
>POR_MARPA (O80333) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 458 Score = 86.3 bits (212), Expect = 2e-17 Identities = 37/50 (74%), Positives = 47/50 (94%) Frame = -3 Query: 384 VVAEPSLAKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGL 235 VV++P L+KSGVYWSWNKDS SFEN+LS+EAS+PEKA+++WELSE+L GL Sbjct: 408 VVSDPKLSKSGVYWSWNKDSGSFENELSEEASNPEKAKRLWELSERLSGL 457
>POR_CHLRE (Q39617) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 397 Score = 68.2 bits (165), Expect = 5e-12 Identities = 27/51 (52%), Positives = 40/51 (78%) Frame = -3 Query: 384 VVAEPSLAKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 232 V+++P L KSG YWSW+ + SF+NQ+S+E +D KA K+W++S KLVGL+ Sbjct: 346 VISDPKLNKSGAYWSWSSTTGSFDNQVSEEVADDSKASKLWDISAKLVGLS 396
>POR_PLEBO (O66148) Light-dependent protochlorophyllide reductase (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) (LPOR) Length = 322 Score = 59.3 bits (142), Expect = 2e-09 Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 4/55 (7%) Frame = -3 Query: 384 VVAEPSLAKSGVYWSWN----KDSASFENQLSQEASDPEKARKVWELSEKLVGLA 232 VVA+P +SGV+WSW + SF +LS++ +D KA+++WELSEKLVGLA Sbjct: 268 VVADPEFKQSGVHWSWGNRQKEGRESFVQELSEKVTDDAKAKRMWELSEKLVGLA 322
>POR_SYNY3 (Q59987) Light-dependent protochlorophyllide reductase (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) (LPOR) Length = 322 Score = 55.1 bits (131), Expect = 4e-08 Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 4/54 (7%) Frame = -3 Query: 384 VVAEPSLAKSGVYWSW-NKDSA---SFENQLSQEASDPEKARKVWELSEKLVGL 235 VVA+ SGV+WSW N+ A +F +LS++ SD +KA+++W+LSEKLVGL Sbjct: 268 VVADDKFKDSGVHWSWGNRQQAGREAFVQELSEQGSDAQKAQRMWDLSEKLVGL 321
>RDH13_MOUSE (Q8CEE7) Retinol dehydrogenase 13 (EC 1.1.1.-)| Length = 334 Score = 33.1 bits (74), Expect = 0.17 Identities = 22/56 (39%), Positives = 30/56 (53%) Frame = -3 Query: 381 VAEPSLAKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA*STANP 214 VAE SG Y+ ++ A S EA D E AR++W S +LVGLA + +P Sbjct: 276 VAEELENVSGKYFDGLREKAP-----SPEAEDEEVARRLWTESARLVGLAMAHGSP 326
>RDH14_HUMAN (Q9HBH5) Retinol dehydrogenase 14 (EC 1.1.1.-) (Alcohol| dehydrogenase PAN2) Length = 336 Score = 30.8 bits (68), Expect = 0.82 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = -3 Query: 315 ENQLSQEASDPEKARKVWELSEKLVGL 235 E +L +A D ARK+W++SE +VGL Sbjct: 308 EEELLPKAMDESVARKLWDISEVMVGL 334
>FIG2_YEAST (P25653) Factor-induced gene 2 precursor (Cell wall adhesin FIG2)| Length = 1609 Score = 30.8 bits (68), Expect = 0.82 Identities = 20/56 (35%), Positives = 29/56 (51%) Frame = +2 Query: 194 RCMHASMGFAVDHASPTSFSLSSQTLRAFSGSLASWESWFSKDAESLFQLQYTPDF 361 R H+S F + +P+S SL S T F+ S+ +SW S ++E L T DF Sbjct: 140 RTSHSSSSFELPVTAPSSSSLPSSTSLTFT-SVNPSQSWTSFNSEKSSALSSTIDF 194
>GANA_HUMIN (P83691) Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89)| (Endo-1,4-beta-galactanase) (Galactanase) Length = 332 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -1 Query: 107 QERPCEWPRECIDLVWKMYNFRQTLE**NRRPD*G 3 Q P WP + +L WK+YN+ TL+ NR D G Sbjct: 92 QTTPAGWPSDINNLAWKLYNY--TLDSMNRFADAG 124
>RDH13_HUMAN (Q8NBN7) Retinol dehydrogenase 13 (EC 1.1.1.-)| Length = 331 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/49 (40%), Positives = 25/49 (51%) Frame = -3 Query: 381 VAEPSLAKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGL 235 VAE SG Y+ K A + EA D E AR++W S +LVGL Sbjct: 276 VAEELADVSGKYFDGLKQKAP-----APEAEDEEVARRLWAESARLVGL 319
>RDH14_MOUSE (Q9ERI6) Retinol dehydrogenase 14 (EC 1.1.1.-) (Alcohol| dehydrogenase PAN2) Length = 334 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = -3 Query: 315 ENQLSQEASDPEKARKVWELSEKLVGL 235 E +L +A D ARK+W++SE +VG+ Sbjct: 306 EEELLPKAMDESVARKLWDISEVMVGI 332
>WWOX_MOUSE (Q91WL8) WW domain-containing oxidoreductase (EC 1.1.1.-)| Length = 414 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = -3 Query: 303 SQEASDPEKARKVWELSEKLV 241 S+EA E AR +WELSE+L+ Sbjct: 385 SEEAQSEETARALWELSERLI 405
>ATXR3_ARATH (O23372) Probable histone-lysine N-methyltransferase ATXR3 (EC| 2.1.1.43) (Trithorax-related protein 3) (TRX-related protein 3) (Protein SET DOMAIN GROUP 2) Length = 2351 Score = 29.3 bits (64), Expect = 2.4 Identities = 21/56 (37%), Positives = 31/56 (55%) Frame = +1 Query: 25 YYSNVCRKLYIFHTRSMHSRGHSQGLSCVIELLKRRKHDNYQISLKKRQVEHRPAS 192 Y S+ CRKL +RS+HS +SQ + E L R + + SL+K +H+ AS Sbjct: 322 YGSSKCRKLSDDCSRSLHSDHYSQHSA---ERLYRDSYPSKNSSLEKYPRKHQDAS 374
>TIE2_BRARE (O73791) Tyrosine-protein kinase receptor Tie-2 precursor (EC| 2.7.10.1) Length = 1116 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/45 (37%), Positives = 25/45 (55%) Frame = +2 Query: 185 RRPRCMHASMGFAVDHASPTSFSLSSQTLRAFSGSLASWESWFSK 319 R+ R + FA+ H T+ +LSSQ L AFS +A S+ S+ Sbjct: 907 RKSRVLETDPAFAIAHR--TASTLSSQQLLAFSADVARGMSYLSQ 949
>WWOX_BRARE (Q803A8) WW domain-containing oxidoreductase (EC 1.1.1.-)| Length = 412 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -3 Query: 303 SQEASDPEKARKVWELSEKLV 241 S +A DP A +WELSE+LV Sbjct: 382 SPQAQDPAAALSLWELSERLV 402
>NIFK_THIFE (P15052) Nitrogenase molybdenum-iron protein beta chain (EC| 1.18.6.1) (Nitrogenase component I) (Dinitrogenase) Length = 518 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = -3 Query: 321 SFENQL-SQEASDPEKARKVWELSEKLVGLA*STANPMDACMHLGR 187 +FEN+L + + + ++ K WE EK + NP AC LGR Sbjct: 30 TFENRLPADQVARGQEWTKTWEYREKNFAREALSVNPDKACQPLGR 75
>DHAK_ECOLI (P76015) PTS-dependent dihydroxyacetone kinase,| dihydroxyacetone-binding subunit dhaK (EC 2.7.-.-) Length = 366 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -3 Query: 258 LSEKLVGLA*STANPMDACMHLGRR 184 L EKLVG A + +DAC LGR+ Sbjct: 165 LIEKLVGAAAERGDSLDACAELGRK 189
>RPOB_STRPM (Q48VR1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1188 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = -2 Query: 253 REARRTRMIHRKSHGCMHASRTPADAQLVVFLNL--FGNYHVYAFLEAQLRRRGLASGR 83 R R +H +G M TP + + NL FG+ + Y F++ R+ A+GR Sbjct: 502 RAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFGHLNKYGFIQTPYRKVDRATGR 560
>RPOB_STRP6 (Q5XE97) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1188 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = -2 Query: 253 REARRTRMIHRKSHGCMHASRTPADAQLVVFLNL--FGNYHVYAFLEAQLRRRGLASGR 83 R R +H +G M TP + + NL FG+ + Y F++ R+ A+GR Sbjct: 502 RAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFGHLNKYGFIQTPYRKVDRATGR 560
>RPOB_STRP3 (Q8K8W3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1188 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = -2 Query: 253 REARRTRMIHRKSHGCMHASRTPADAQLVVFLNL--FGNYHVYAFLEAQLRRRGLASGR 83 R R +H +G M TP + + NL FG+ + Y F++ R+ A+GR Sbjct: 502 RAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFGHLNKYGFIQTPYRKVDRATGR 560
>GR33A_DROME (Q9VKA5) Putative gustatory receptor 33a| Length = 475 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/39 (30%), Positives = 22/39 (56%) Frame = +2 Query: 269 LRAFSGSLASWESWFSKDAESLFQLQYTPDFARLGSATT 385 +++F+ WE +F + LF L YT F+ + +AT+ Sbjct: 416 MKSFTLQFLHWEGFFQFNGVGLFALDYTFIFSTVSAATS 454
>CTPI_MYCTU (Q10900) Probable cation-transporting ATPase I (EC 3.6.3.-)| Length = 1625 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/47 (29%), Positives = 23/47 (48%) Frame = +2 Query: 191 PRCMHASMGFAVDHASPTSFSLSSQTLRAFSGSLASWESWFSKDAES 331 PRC A G +HA L+ Q LR + + +W++ + D E+ Sbjct: 1175 PRCRLADPGVDHEHAESVVRHLAEQGLRVLAVAQRTWDNGTTHDDET 1221
>GANA_THIHE (P83692) Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89)| (Endo-1,4-beta-galactanase) (Galactanase) Length = 332 Score = 27.7 bits (60), Expect = 7.0 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = -1 Query: 107 QERPCEWPRECIDLVWKMYNF 45 Q P WP + +L WK+YN+ Sbjct: 92 QTMPAGWPSDIDNLSWKLYNY 112
>ROS_HUMAN (P08922) Proto-oncogene tyrosine-protein kinase ROS precursor (EC| 2.7.10.1) (c-ros-1) Length = 2347 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%) Frame = +2 Query: 242 TSFSLSSQTLR---AFSGSLASWESWFSKDAESLFQLQ 346 TS +L +Q LR F+GS +S +W SK+ + +FQ + Sbjct: 1792 TSNNLQNQNLRWKMTFNGSCSSVCTWKSKNLKGIFQFR 1829
>AMYH_SACDI (P04065) Glucoamylase S1 precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) (GAI) Length = 767 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/34 (32%), Positives = 18/34 (52%) Frame = -3 Query: 384 VVAEPSLAKSGVYWSWNKDSASFENQLSQEASDP 283 V+A PS ++ W +DSA N + ++DP Sbjct: 371 VIASPSQTHPDYFYQWIRDSALTINSIVSHSADP 404
>MDLB_PSEPU (P20932) L(+)-mandelate dehydrogenase (EC 1.-.-.-) (S-mandelate| dehydrogenase) (MDH) Length = 393 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +3 Query: 144 LPNKFKKTTS*ASAGVLDACMHP-WDLRWI 230 L N+FK S ++ VLD C+HP W L ++ Sbjct: 169 LHNRFKIPMSYSAKVVLDGCLHPRWSLDFV 198
>AMYI_SACDI (P29760) Glucoamylase S2 precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) (GAII) Length = 768 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/34 (32%), Positives = 18/34 (52%) Frame = -3 Query: 384 VVAEPSLAKSGVYWSWNKDSASFENQLSQEASDP 283 V+A PS ++ W +DSA N + ++DP Sbjct: 372 VIASPSQTHPDYFYQWIRDSALTINSIVSHSADP 405 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,955,792 Number of Sequences: 219361 Number of extensions: 852796 Number of successful extensions: 2555 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 2503 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2552 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
