ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet32f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TGFB3_CHICK (P16047) Transforming growth factor beta-3 precursor... 28 5.2
2BCL9_MOUSE (Q9D219) B-cell lymphoma 9 protein (Bcl-9) 28 5.2
3NLK_HUMAN (Q9UBE8) Serine/threonine kinase NLK (EC 2.7.11.24) (N... 28 8.8

>TGFB3_CHICK (P16047) Transforming growth factor beta-3 precursor (TGF-beta-3)|
          Length = 412

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 27  LKNNQILHKPHFFRVHTPTHHLDSPS 104
           LK  + LH PH   +  P H L+SP+
Sbjct: 267 LKKQKDLHNPHLILMMLPPHRLESPT 292



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>BCL9_MOUSE (Q9D219) B-cell lymphoma 9 protein (Bcl-9)|
          Length = 1425

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 3   KKKDALINLKNNQILHKPHFFRVHTPTHHLDS-PSHAKSISPERHAAQQHPS 155
           K+ ++  ++K+ +  H PH     T T    S PSH ++ +PE  +AQ+ P+
Sbjct: 123 KECNSADHIKSQESQHTPHSMTPSTATAPRSSTPSHGQTPAPEPISAQKTPA 174



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>NLK_HUMAN (Q9UBE8) Serine/threonine kinase NLK (EC 2.7.11.24) (Nemo-like|
           kinase) (LAK1 protein)
          Length = 515

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 45  LHKPHFFRVHTPTHHLDSPSHAKSISPERHAAQQHPSAMKLSA 173
           L  PH    H P HHL  P  A ++    H  QQH S+   +A
Sbjct: 26  LPPPHLHHHHHPQHHL-HPGSAAAV----HPVQQHTSSAAAAA 63


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,616,565
Number of Sequences: 219361
Number of extensions: 458130
Number of successful extensions: 1337
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 80,573,946
effective HSP length: 35
effective length of database: 72,896,311
effective search space used: 1749511464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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