ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaet32e07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC113332.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1057_B02, complete sequence Length = 99795 Score = 79.8 bits (40), Expect = 4e-12 Identities = 43/44 (97%) Strand = Plus / Minus Query: 252 cacgttgcacttcttcctgatctcgccctggcttccggtgagca 295 ||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 42129 cacgttgcacttcttcctgatctcgccctggctgccggtgagca 42086
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 79.8 bits (40), Expect = 4e-12 Identities = 43/44 (97%) Strand = Plus / Minus Query: 252 cacgttgcacttcttcctgatctcgccctggcttccggtgagca 295 ||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 24439456 cacgttgcacttcttcctgatctcgccctggctgccggtgagca 24439413
>dbj|D14997.1|RICPEROX Oryza sativa (japonica cultivar-group) mRNA for peroxidase, complete cds Length = 1325 Score = 79.8 bits (40), Expect = 4e-12 Identities = 43/44 (97%) Strand = Plus / Minus Query: 252 cacgttgcacttcttcctgatctcgccctggcttccggtgagca 295 ||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1037 cacgttgcacttcttcctgatctcgccctggctgccggtgagca 994
>dbj|AK104950.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-A02, full insert sequence Length = 1347 Score = 79.8 bits (40), Expect = 4e-12 Identities = 43/44 (97%) Strand = Plus / Minus Query: 252 cacgttgcacttcttcctgatctcgccctggcttccggtgagca 295 ||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1066 cacgttgcacttcttcctgatctcgccctggctgccggtgagca 1023
>dbj|AK066855.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013082J20, full insert sequence Length = 1348 Score = 79.8 bits (40), Expect = 4e-12 Identities = 43/44 (97%) Strand = Plus / Minus Query: 252 cacgttgcacttcttcctgatctcgccctggcttccggtgagca 295 ||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1067 cacgttgcacttcttcctgatctcgccctggctgccggtgagca 1024
>tpe|BN000603.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx74 gene for class III peroxidase 74 precursor, exons 1-4 Length = 1311 Score = 79.8 bits (40), Expect = 4e-12 Identities = 43/44 (97%) Strand = Plus / Minus Query: 252 cacgttgcacttcttcctgatctcgccctggcttccggtgagca 295 ||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1302 cacgttgcacttcttcctgatctcgccctggctgccggtgagca 1259
>emb|Z22920.1|SPPEROXDS S.polyrrhiza mRNA for peroxidase Length = 1203 Score = 56.0 bits (28), Expect = 7e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 262 ttcttcctgatctcgccctggcttccggtgag 293 |||||||||||||| ||||||||||||||||| Sbjct: 984 ttcttcctgatctccccctggcttccggtgag 953
>ref|XM_550288.1| Oryza sativa (japonica cultivar-group), mRNA Length = 981 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Minus Query: 258 gcacttcttcctgatctcgccctggcttccggt 290 ||||||| ||||||||||||||||||| ||||| Sbjct: 966 gcacttcctcctgatctcgccctggctgccggt 934
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Minus Query: 258 gcacttcttcctgatctcgccctggcttccggt 290 ||||||| ||||||||||||||||||| ||||| Sbjct: 3732915 gcacttcctcctgatctcgccctggctgccggt 3732883 Score = 42.1 bits (21), Expect = 0.98 Identities = 27/29 (93%) Strand = Plus / Minus Query: 267 cctgatctcgccctggcttccggtgagca 295 ||||| |||||||||||| |||||||||| Sbjct: 12539778 cctgacctcgccctggctgccggtgagca 12539750 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 aggagggaggaagtaattat 146 |||||||||||||||||||| Sbjct: 36991029 aggagggaggaagtaattat 36991010 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 257 tgcacttcttcctgatctcgccct 280 ||||||||||||||||||| |||| Sbjct: 10746991 tgcacttcttcctgatctccccct 10747014
>dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0089K24 Length = 154137 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Minus Query: 258 gcacttcttcctgatctcgccctggcttccggt 290 ||||||| ||||||||||||||||||| ||||| Sbjct: 6457 gcacttcctcctgatctcgccctggctgccggt 6425
>dbj|AK058554.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-C12, full insert sequence Length = 777 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Minus Query: 258 gcacttcttcctgatctcgccctggcttccggt 290 ||||||| ||||||||||||||||||| ||||| Sbjct: 670 gcacttcctcctgatctcgccctggctgccggt 638
>tpe|BN000530.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx1 gene for class III peroxidase 1 precursor, exons 1-4 Length = 1781 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Minus Query: 258 gcacttcttcctgatctcgccctggcttccggt 290 ||||||| ||||||||||||||||||| ||||| Sbjct: 1766 gcacttcctcctgatctcgccctggctgccggt 1734
>emb|AL162421.17| Human DNA sequence from clone RP11-415N7 on chromosome 9, complete sequence Length = 108032 Score = 46.1 bits (23), Expect = 0.063 Identities = 23/23 (100%) Strand = Plus / Minus Query: 61 aacaaaacaatcaatcaataaag 83 ||||||||||||||||||||||| Sbjct: 59180 aacaaaacaatcaatcaataaag 59158
>gb|AC125783.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0039K08, complete sequence Length = 122163 Score = 46.1 bits (23), Expect = 0.063 Identities = 38/43 (88%) Strand = Plus / Minus Query: 253 acgttgcacttcttcctgatctcgccctggcttccggtgagca 295 |||| ||||||||||||||||||||| | || |||||||||| Sbjct: 17989 acgtagcacttcttcctgatctcgccttcgccgccggtgagca 17947
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.063 Identities = 38/43 (88%) Strand = Plus / Minus Query: 253 acgttgcacttcttcctgatctcgccctggcttccggtgagca 295 |||| ||||||||||||||||||||| | || |||||||||| Sbjct: 25705646 acgtagcacttcttcctgatctcgccttcgccgccggtgagca 25705604
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.063 Identities = 38/43 (88%) Strand = Plus / Minus Query: 253 acgttgcacttcttcctgatctcgccctggcttccggtgagca 295 |||| ||||||||||||||||||||| | | ||||||||||| Sbjct: 16679507 acgtagcacttcttcctgatctcgccgtcggctccggtgagca 16679465
>dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0664F03 Length = 184242 Score = 46.1 bits (23), Expect = 0.063 Identities = 38/43 (88%) Strand = Plus / Minus Query: 253 acgttgcacttcttcctgatctcgccctggcttccggtgagca 295 |||| ||||||||||||||||||||| | | ||||||||||| Sbjct: 30994 acgtagcacttcttcctgatctcgccgtcggctccggtgagca 30952
>dbj|AK108713.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-B05, full insert sequence Length = 1346 Score = 46.1 bits (23), Expect = 0.063 Identities = 38/43 (88%) Strand = Plus / Minus Query: 253 acgttgcacttcttcctgatctcgccctggcttccggtgagca 295 |||| ||||||||||||||||||||| | || |||||||||| Sbjct: 1093 acgtagcacttcttcctgatctcgccttcgccgccggtgagca 1051
>tpe|BN000663.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx134 gene for class III peroxidase 134 precursor, exons 1-2 Length = 1524 Score = 46.1 bits (23), Expect = 0.063 Identities = 38/43 (88%) Strand = Plus / Minus Query: 253 acgttgcacttcttcctgatctcgccctggcttccggtgagca 295 |||| ||||||||||||||||||||| | || |||||||||| Sbjct: 1514 acgtagcacttcttcctgatctcgccttcgccgccggtgagca 1472
>tpe|BN000609.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx80 gene for class III peroxidase 80 precursor, exons 1-2 Length = 1149 Score = 46.1 bits (23), Expect = 0.063 Identities = 38/43 (88%) Strand = Plus / Minus Query: 253 acgttgcacttcttcctgatctcgccctggcttccggtgagca 295 |||| ||||||||||||||||||||| | | ||||||||||| Sbjct: 1139 acgtagcacttcttcctgatctcgccgtcggctccggtgagca 1097
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.063 Identities = 38/43 (88%) Strand = Plus / Minus Query: 253 acgttgcacttcttcctgatctcgccctggcttccggtgagca 295 |||| ||||||||||||||||||||| | || |||||||||| Sbjct: 26024316 acgtagcacttcttcctgatctcgccttcgccgccggtgagca 26024274
>gb|AY857763.1| Triticum monococcum peroxidase 9 (POX9) mRNA, partial cds Length = 760 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Minus Query: 270 gatctcgccctggcttccggtgagca 295 ||||||||||||||| |||||||||| Sbjct: 536 gatctcgccctggctgccggtgagca 511
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Minus Query: 257 tgcacttcttcctgatctcgccctgg 282 |||| ||||||||||||||||||||| Sbjct: 14294660 tgcagttcttcctgatctcgccctgg 14294635
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Minus Query: 257 tgcacttcttcctgatctcgccctgg 282 |||| ||||||||||||||||||||| Sbjct: 43889 tgcagttcttcctgatctcgccctgg 43864
>gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAb0012F18, complete sequence Length = 122159 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Minus Query: 257 tgcacttcttcctgatctcgccctgg 282 |||| ||||||||||||||||||||| Sbjct: 106048 tgcagttcttcctgatctcgccctgg 106023
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Minus Query: 257 tgcacttcttcctgatctcgccctgg 282 |||| ||||||||||||||||||||| Sbjct: 14289635 tgcagttcttcctgatctcgccctgg 14289610
>tpe|BN000573.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx44 gene for class III peroxidase 44 precursor, exons 1-2 Length = 1761 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Minus Query: 257 tgcacttcttcctgatctcgccctgg 282 |||| ||||||||||||||||||||| Sbjct: 1747 tgcagttcttcctgatctcgccctgg 1722
>ref|NM_183815.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1071 Score = 42.1 bits (21), Expect = 0.98 Identities = 27/29 (93%) Strand = Plus / Minus Query: 267 cctgatctcgccctggcttccggtgagca 295 ||||| |||||||||||| |||||||||| Sbjct: 957 cctgacctcgccctggctgccggtgagca 929
>gb|AY389595.1| Hyacinthus orientalis secretory peroxidase mRNA, partial cds Length = 578 Score = 42.1 bits (21), Expect = 0.98 Identities = 36/41 (87%) Strand = Plus / Minus Query: 253 acgttgcacttcttcctgatctcgccctggcttccggtgag 293 |||||||||| ||||| ||||||||||| | ||||||||| Sbjct: 278 acgttgcactgcttccggatctcgcccttggatccggtgag 238
>gb|AC133206.3| Mus musculus BAC clone RP23-110D10 from chromosome 1, complete sequence Length = 177383 Score = 42.1 bits (21), Expect = 0.98 Identities = 24/25 (96%) Strand = Plus / Plus Query: 59 agaacaaaacaatcaatcaataaag 83 ||||||||||||| ||||||||||| Sbjct: 164760 agaacaaaacaataaatcaataaag 164784
>ref|XM_986932.1| PREDICTED: Mus musculus similar to heat shock protein 8 (LOC666904), mRNA Length = 2140 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 gagttcttggaggaaacttta 46 ||||||||||||||||||||| Sbjct: 1712 gagttcttggaggaaacttta 1692
>gb|AC133750.2| Homo sapiens 3 BAC RP11-619K22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 87386 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 caatcaatcaataaagtgaaa 88 ||||||||||||||||||||| Sbjct: 22552 caatcaatcaataaagtgaaa 22572
>gb|AC111044.9| Mus musculus chromosome 10, clone RP23-299H4, complete sequence Length = 165614 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 gagttcttggaggaaacttta 46 ||||||||||||||||||||| Sbjct: 141172 gagttcttggaggaaacttta 141152
>gb|AC152392.6| Mus musculus chromosome 1, clone RP23-300P10, complete sequence Length = 225267 Score = 42.1 bits (21), Expect = 0.98 Identities = 24/25 (96%) Strand = Plus / Plus Query: 59 agaacaaaacaatcaatcaataaag 83 ||||||||||||| ||||||||||| Sbjct: 20410 agaacaaaacaataaatcaataaag 20434
>emb|CR388058.6| Zebrafish DNA sequence from clone DKEY-184L17 in linkage group 8, complete sequence Length = 141160 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 acaaaacaatcaatcaataaa 82 ||||||||||||||||||||| Sbjct: 112362 acaaaacaatcaatcaataaa 112342
>emb|BX664622.10| Zebrafish DNA sequence from clone DKEYP-90E1, complete sequence Length = 172445 Score = 42.1 bits (21), Expect = 0.98 Identities = 27/29 (93%) Strand = Plus / Minus Query: 51 gatgtaacagaacaaaacaatcaatcaat 79 ||||||||| ||||||| ||||||||||| Sbjct: 145599 gatgtaacaaaacaaaaaaatcaatcaat 145571
>gb|AC171138.2| Helobdella robusta clone CH306-1A9, complete sequence Length = 97729 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Minus Query: 59 agaacaaaacaatcaatcaat 79 ||||||||||||||||||||| Sbjct: 86404 agaacaaaacaatcaatcaat 86384
>emb|BX005417.13| Zebrafish DNA sequence from clone DKEY-240N22, complete sequence Length = 175997 Score = 42.1 bits (21), Expect = 0.98 Identities = 27/29 (93%) Strand = Plus / Plus Query: 51 gatgtaacagaacaaaacaatcaatcaat 79 ||||||||| ||||||| ||||||||||| Sbjct: 137980 gatgtaacaaaacaaaaaaatcaatcaat 138008
>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0537A05 Length = 152396 Score = 42.1 bits (21), Expect = 0.98 Identities = 27/29 (93%) Strand = Plus / Minus Query: 267 cctgatctcgccctggcttccggtgagca 295 ||||| |||||||||||| |||||||||| Sbjct: 51388 cctgacctcgccctggctgccggtgagca 51360
>dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1135C02 Length = 152306 Score = 42.1 bits (21), Expect = 0.98 Identities = 27/29 (93%) Strand = Plus / Minus Query: 267 cctgatctcgccctggcttccggtgagca 295 ||||| |||||||||||| |||||||||| Sbjct: 125393 cctgacctcgccctggctgccggtgagca 125365
>dbj|AB017067.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJC20 Length = 83689 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 ttattgtgattgagttcttgg 35 ||||||||||||||||||||| Sbjct: 4683 ttattgtgattgagttcttgg 4703
>dbj|AK121616.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044C11, full insert sequence Length = 5938 Score = 42.1 bits (21), Expect = 0.98 Identities = 27/29 (93%) Strand = Plus / Minus Query: 267 cctgatctcgccctggcttccggtgagca 295 ||||| |||||||||||| |||||||||| Sbjct: 5569 cctgacctcgccctggctgccggtgagca 5541
>gb|AC154794.2| Mus musculus BAC clone RP24-485J1 from 16, complete sequence Length = 179257 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 caatcaatcaataaagtgaaa 88 ||||||||||||||||||||| Sbjct: 35651 caatcaatcaataaagtgaaa 35671
>tpe|BN000543.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx14 gene for class III peroxidase 14 precursor, exons 1-3 Length = 5620 Score = 42.1 bits (21), Expect = 0.98 Identities = 27/29 (93%) Strand = Plus / Minus Query: 267 cctgatctcgccctggcttccggtgagca 295 ||||| |||||||||||| |||||||||| Sbjct: 5506 cctgacctcgccctggctgccggtgagca 5478
>ref|XM_476365.1| Oryza sativa (japonica cultivar-group), mRNA Length = 744 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 258 gcacttcttcctgatctcgccctg 281 |||||| ||||||||||||||||| Sbjct: 501 gcacttgttcctgatctcgccctg 478
>ref|NM_183638.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1044 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 tgcacttcttcctgatctcgccct 280 ||||||||||||||||||| |||| Sbjct: 1021 tgcacttcttcctgatctccccct 998
>ref|XM_329602.1| Neurospora crassa OR74A hypothetical protein (NCU08558.1) partial mRNA Length = 834 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 gagatgaggagggaggaagt 140 |||||||||||||||||||| Sbjct: 28 gagatgaggagggaggaagt 47
>ref|XM_957634.1| Neurospora crassa OR74A hypothetical protein (NCU08558.1) partial mRNA Length = 834 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 gagatgaggagggaggaagt 140 |||||||||||||||||||| Sbjct: 28 gagatgaggagggaggaagt 47
>gb|AY550120.1| Saussurea medusa F3H-like protein gene, complete cds Length = 1630 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 ttataatctacacgggaaaa 162 |||||||||||||||||||| Sbjct: 1285 ttataatctacacgggaaaa 1266
>gb|DQ474127.1| Pseudoarmillariella ectypoides isolate AFTOL-ID 1557 RNA polymerase II second largest subunit (rpb2) gene, partial cds Length = 1098 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 gtgattgagttcttggagga 39 |||||||||||||||||||| Sbjct: 509 gtgattgagttcttggagga 528
>emb|CR626934.1| Triticum aestivum Length = 94398 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 ttgtgattgagttcttggag 37 |||||||||||||||||||| Sbjct: 86849 ttgtgattgagttcttggag 86868
>gb|AC114824.5| Mus musculus BAC clone RP23-342J11 from chromosome 17, complete sequence Length = 216044 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 aacaaaacaatcaatcaata 80 |||||||||||||||||||| Sbjct: 130075 aacaaaacaatcaatcaata 130056
>gb|AC119242.5| Mus musculus chromosome 6, clone RP24-229C13, complete sequence Length = 189108 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 agagatgaggagggaggaag 139 |||||||||||||||||||| Sbjct: 42910 agagatgaggagggaggaag 42929
>gb|DQ457635.1| Hyphodontia alutaria isolate AFTOL-ID 810 RNA polymerase II second largest subunit (rpb2) gene, partial cds Length = 1706 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 gtgattgagttcttggagga 39 |||||||||||||||||||| Sbjct: 60 gtgattgagttcttggagga 79
>emb|BX927285.6| Zebrafish DNA sequence from clone CH211-65M8, complete sequence Length = 188393 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 cagaacaaaacaatcaatca 77 |||||||||||||||||||| Sbjct: 114074 cagaacaaaacaatcaatca 114093
>emb|AL606830.4| Human DNA sequence from clone RP11-428B11 on chromosome 6, complete sequence Length = 69372 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 gtaacagaacaaaacaatca 73 |||||||||||||||||||| Sbjct: 43309 gtaacagaacaaaacaatca 43328
>emb|AL355310.20| Human DNA sequence from clone RP5-1160K1 on chromosome 1 Contains the GPR61 gene for G protein-coupled receptor 61, the GNAI3 gene for guanine nucleotide binding protein (G protein) alpha inhibiting activity polypeptide 3, two novel genes, the GNAT2 gene for guanine nucleotide binding protein (G protein) alpha transducing activity polypeptide 2, the AMPD2 gene for adenosine monophosphate deaminase 2 (isoform L) and the 5' end of a ribosomal protein L7 (RPL7) pseudogene, complete sequence Length = 112911 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 caatcaatcaataaagtgaa 87 |||||||||||||||||||| Sbjct: 49958 caatcaatcaataaagtgaa 49977
>emb|AL023883.6|HS404K8 Human DNA sequence from clone RP3-404K8 on chromosome 6p22.2-22.3 Contains the PRL gene for prolactin, complete sequence Length = 151236 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 aggaaactttacatggatgt 55 |||||||||||||||||||| Sbjct: 69265 aggaaactttacatggatgt 69246
>emb|BX897673.1| Neurospora crassa DNA linkage group III BAC clone B13M15 Length = 63598 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 gagatgaggagggaggaagt 140 |||||||||||||||||||| Sbjct: 16846 gagatgaggagggaggaagt 16827
>emb|AL808108.3| Zebrafish DNA sequence from clone CH211-240L14 in linkage group 14 Contains two novel genes, a novel gene similar to human GRHPR (glyoxylate reductase/hydroxypyruvate reductase), a novel gene similar to human C4orf1 (chromosome 4 open reading frame 1) and three CpG islands, complete sequence Length = 170556 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 gtaacagaacaaaacaatca 73 |||||||||||||||||||| Sbjct: 154221 gtaacagaacaaaacaatca 154202
>emb|BX936381.11| Zebrafish DNA sequence from clone CH211-152H14 in linkage group 17, complete sequence Length = 156270 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 caaaacaatcaatcaataaa 82 |||||||||||||||||||| Sbjct: 53688 caaaacaatcaatcaataaa 53669
>emb|BX470241.5| Zebrafish DNA sequence from clone CH211-240J13 in linkage group 14, complete sequence Length = 163257 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 acagaacaaaacaatcaatc 76 |||||||||||||||||||| Sbjct: 19470 acagaacaaaacaatcaatc 19489
>gb|AC087233.6| Mus Musculus Chromosome 17 RP23-476A24, complete sequence Length = 165330 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 agatgaggagggaggaagta 141 |||||||||||||||||||| Sbjct: 76942 agatgaggagggaggaagta 76923
>gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, complete sequence Length = 139476 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 caaaacaatcaatcaataaa 82 |||||||||||||||||||| Sbjct: 68568 caaaacaatcaatcaataaa 68549
>gb|AC108460.5| Homo sapiens chromosome 11, clone CTD-2302A16, complete sequence Length = 149148 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 aaactttacatggatgtaac 58 |||||||||||||||||||| Sbjct: 31992 aaactttacatggatgtaac 31973
>gb|AC021436.8| Homo sapiens chromosome , clone RP11-121C18, complete sequence Length = 180765 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 aaactttacatggatgtaac 58 |||||||||||||||||||| Sbjct: 92380 aaactttacatggatgtaac 92361
>gb|AC008966.9| Homo sapiens chromosome 5 clone CTD-2366F13, complete sequence Length = 174831 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 caaaacaatcaatcaataaa 82 |||||||||||||||||||| Sbjct: 19579 caaaacaatcaatcaataaa 19560
>gb|AC152959.2| Mus musculus 6 BAC RP23-78B5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206857 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 agagatgaggagggaggaag 139 |||||||||||||||||||| Sbjct: 182060 agagatgaggagggaggaag 182079
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gaacaaaacaatcaatcaat 79 |||||||||||||||||||| Sbjct: 1541344 gaacaaaacaatcaatcaat 1541325
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 258 gcacttcttcctgatctcgccctg 281 |||||| ||||||||||||||||| Sbjct: 236086 gcacttgttcctgatctcgccctg 236063
>gb|AC105393.3| Homo sapiens BAC clone RP11-379N10 from 2, complete sequence Length = 121822 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 aataaagtgaaagcttgggt 96 |||||||||||||||||||| Sbjct: 34054 aataaagtgaaagcttgggt 34073
>dbj|AP002820.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0702D12 Length = 137332 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 257 tgcacttcttcctgatctcgccct 280 ||||||||||||||||||| |||| Sbjct: 69805 tgcacttcttcctgatctccccct 69828
>dbj|AP003415.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1402_H07 Length = 140620 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 aggagggaggaagtaattat 146 |||||||||||||||||||| Sbjct: 81333 aggagggaggaagtaattat 81314
>dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0446F04 Length = 175390 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 258 gcacttcttcctgatctcgccctg 281 |||||| ||||||||||||||||| Sbjct: 70950 gcacttgttcctgatctcgccctg 70927
>dbj|AK107894.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-134-E12, full insert sequence Length = 744 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 258 gcacttcttcctgatctcgccctg 281 |||||| ||||||||||||||||| Sbjct: 501 gcacttgttcctgatctcgccctg 478
>dbj|AK104781.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-C08, full insert sequence Length = 1331 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 tgcacttcttcctgatctcgccct 280 ||||||||||||||||||| |||| Sbjct: 1108 tgcacttcttcctgatctccccct 1085
>dbj|AK104388.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-G02, full insert sequence Length = 1331 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 tgcacttcttcctgatctcgccct 280 ||||||||||||||||||| |||| Sbjct: 1108 tgcacttcttcctgatctccccct 1085
>dbj|AK068755.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159G18, full insert sequence Length = 1345 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 tgcacttcttcctgatctcgccct 280 ||||||||||||||||||| |||| Sbjct: 1102 tgcacttcttcctgatctccccct 1079
>gb|AC154712.2| Mus musculus BAC clone RP24-359J22 from 16, complete sequence Length = 144031 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 aacaaaacaatcaatcaata 80 |||||||||||||||||||| Sbjct: 124089 aacaaaacaatcaatcaata 124108
>emb|BX927276.23| Zebrafish DNA sequence from clone CH211-124A3 in linkage group 22, complete sequence Length = 166844 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 56 aacagaacaaaacaatcaatcaat 79 ||||||| |||||||||||||||| Sbjct: 52001 aacagaaaaaaacaatcaatcaat 52024
>tpe|BN000626.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx97 gene for class III peroxidase 97 precursor, exons 1-2 Length = 1107 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 258 gcacttcttcctgatctcgccctg 281 |||||| ||||||||||||||||| Sbjct: 1089 gcacttgttcctgatctcgccctg 1066
>tpe|BN000540.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx11 gene for class III peroxidase 11 precursor, exons 1-2 Length = 1255 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 tgcacttcttcctgatctcgccct 280 ||||||||||||||||||| |||| Sbjct: 1232 tgcacttcttcctgatctccccct 1209
>emb|AL118557.5|CNS01DRT Human chromosome 14 DNA sequence BAC R-1033H12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 214175 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 aaaacaatcaatcaataaag 83 |||||||||||||||||||| Sbjct: 106470 aaaacaatcaatcaataaag 106489
>emb|CR391953.15| Zebrafish DNA sequence from clone DKEY-197M24 in linkage group 1, complete sequence Length = 134716 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cagaacaaaacaatcaatca 77 |||||||||||||||||||| Sbjct: 118534 cagaacaaaacaatcaatca 118515
>gb|AC005578.1|AC005578 Homo sapiens chromosome 19, cosmid F20887, complete sequence Length = 43297 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 caatcaatcaataaagtgaa 87 |||||||||||||||||||| Sbjct: 28010 caatcaatcaataaagtgaa 27991
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gaacaaaacaatcaatcaat 79 |||||||||||||||||||| Sbjct: 1541344 gaacaaaacaatcaatcaat 1541325
>emb|AL645987.7| Mouse DNA sequence from clone RP23-27B20 on chromosome 11 Contains a eukaryotic translation initiation factor 3, subunit 2 (beta) (Eif3s2) pseudogene, a novel protein (MOR256-1) similar to the olfactory receptor family and a novel protein (MOR256-28) similar to the olfactory receptor family, complete sequence Length = 99868 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 aacagaacaaaacaatcaat 75 |||||||||||||||||||| Sbjct: 58841 aacagaacaaaacaatcaat 58860
>emb|BX005021.4| Zebrafish DNA sequence from clone DKEY-69D12, complete sequence Length = 188337 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 acagaacaaaacaatcaatc 76 |||||||||||||||||||| Sbjct: 108178 acagaacaaaacaatcaatc 108159
>emb|BX000498.1|CNS08CDO Oryza sativa chromosome 12, . BAC OSJNBa0009F13 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183385 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gaacaaaacaatcaatcaat 79 |||||||||||||||||||| Sbjct: 84388 gaacaaaacaatcaatcaat 84407
>gb|AC154673.2| Mus musculus BAC clone RP24-298M20 from chromosome 17, complete sequence Length = 157621 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 agatgaggagggaggaagta 141 |||||||||||||||||||| Sbjct: 139997 agatgaggagggaggaagta 139978
>emb|AL683877.10| Mouse DNA sequence from clone RP23-120P2 on chromosome 4, complete sequence Length = 184168 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 56 aacagaacaaaacaatcaatcaat 79 |||| ||||||||||||||||||| Sbjct: 86155 aacaaaacaaaacaatcaatcaat 86132 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,092,988 Number of Sequences: 3902068 Number of extensions: 3092988 Number of successful extensions: 73284 Number of sequences better than 10.0: 91 Number of HSP's better than 10.0 without gapping: 93 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72846 Number of HSP's gapped (non-prelim): 438 length of query: 295 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 273 effective length of database: 17,147,199,772 effective search space: 4681185537756 effective search space used: 4681185537756 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
