>HYUC_PSESN (Q01264) Hydantoin utilization protein C (ORF4)|
          Length = 414

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 24/54 (44%), Positives = 35/54 (64%)
 Frame = -3

Query: 323 NGAGHNAMAMARLTRVGMLFVRCRGGVSHSPEEHVAEDNAWAAGVALLRFVEQH 162
           +GAGH+AM +A +T +GM+FVRCR G+SHSP+E    D+       L   + +H
Sbjct: 360 SGAGHDAMFLAEITEIGMVFVRCRNGISHSPKEWAEIDDILTGTKVLYESIIKH 413

>AMAB2_BACST (Q53389) N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87)|
           (L-carbamoylase)
          Length = 409

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 22/58 (37%), Positives = 34/58 (58%)
 Frame = -3

Query: 323 NGAGHNAMAMARLTRVGMLFVRCRGGVSHSPEEHVAEDNAWAAGVALLRFVEQHAVAE 150
           +GA H+++ +A +  +GM+FVR + GVSHSP E   +++  A    L   V Q A  E
Sbjct: 352 SGAAHDSVQLAPICPIGMIFVRSQDGVSHSPAEWSTKEDCAAGAEVLYHTVWQLAQGE 409

>AMAB1_BACST (P37113) N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87)|
           (L-carbamoylase)
          Length = 409

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 21/58 (36%), Positives = 32/58 (55%)
 Frame = -3

Query: 323 NGAGHNAMAMARLTRVGMLFVRCRGGVSHSPEEHVAEDNAWAAGVALLRFVEQHAVAE 150
           +GA H+ + +A +  +GM+FVR + GVSHSP E   +++       L   V Q A  E
Sbjct: 352 SGAAHDGVQLAPICPIGMIFVRSQDGVSHSPAEWSTKEDCAVGAEVLYHTVWQLAQGE 409

>ALLC_BACSU (O32149) Allantoate amidohydrolase (EC 3.5.3.-)|
          Length = 412

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 19/36 (52%), Positives = 25/36 (69%)
 Frame = -3

Query: 323 NGAGHNAMAMARLTRVGMLFVRCRGGVSHSPEEHVA 216
           +GAGH+A  + R     MLFV  RGGVSHSP+E+ +
Sbjct: 357 SGAGHDAQMIGRRYPACMLFVPSRGGVSHSPKEYTS 392

>Y588_HAEIN (Q57051) Protein HI0588|
          Length = 411

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = -3

Query: 323 NGAGHNAMAMARLTRVGMLFVRCRGGVSHSPEE 225
           +GAGH+AM MA L   GM+F+    G+SH+P E
Sbjct: 354 SGAGHDAMHMATLCPTGMIFIPSHLGISHNPLE 386

>TILS_XANCP (Q8P7L3) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 435

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 181 SSATPAAHALSSATCSSGEWLTPPRHRTNSIPTRVSRAI 297
           ++A  A HA  +AT ++GEWL    HR +   T + RA+
Sbjct: 94  AAARAARHAAFAATLAAGEWLALAHHRDDQAETFLLRAL 132

>ALLC_ECOLI (P77425) Allantoate amidohydrolase (EC 3.5.3.-)|
          Length = 411

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 323 NGAGHNAMAMARLTRVGMLFVRCRGGVSHSPEE 225
           +GAGH+A   A      M+F+    G+SH+P E
Sbjct: 354 SGAGHDAQIFAPRVPTCMIFIPSINGISHNPAE 386

>SC11A_MOUSE (Q9R053) Sodium channel protein type 11 alpha subunit (Sodium|
           channel protein type XI alpha subunit) (Voltage-gated
           sodium channel alpha subunit Nav1.9) (Sensory neuron
           sodium channel 2) (NaN)
          Length = 1765

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 116 SEMYIWTGLDGRPIGPNKRVSDDDICWN*TRAGPT 12
           SEM ++TG  G P+ P  +  DD  C     A PT
Sbjct: 881 SEMTLYTGQAGAPLAPLAKEEDDMECCGECDASPT 915

>SAS_DROME (Q04164) Putative epidermal cell surface receptor precursor|
           (Stranded at second protein)
          Length = 1693

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 220 TCSSGEWLTPPRHRTNSIPTRVSRAIAIALC 312
           TC+ G+W+  PR R  S P    R++A   C
Sbjct: 556 TCNRGDWMCEPRCRGLSYPRGSQRSMANPNC 586

>DIG1_CAEEL (Q09165) Mesocentin precursor|
          Length = 13100

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 60   PFIRPNGTPVQSSPYVHFGGTDQSQSHISQLGDRVLLDEAEQRDAGGP 203
            P I P+GTP+         GTD + ++I+ +GD +     E+ D G P
Sbjct: 9574 PIINPDGTPL---------GTDSTGNYITSIGDII-----ERDDEGKP 9607



 Score = 27.7 bits (60), Expect = 7.5
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 60   PFIRPNGTPVQSSPYVHFGGTDQSQSHISQLGDRVLLDEAEQRDAGGP 203
            P I P+GTP+         GTD + ++I+ +GD +     E+ D G P
Sbjct: 7037 PIINPDGTPL---------GTDSTGNYITSIGDII-----ERDDEGKP 7070

>GABR1_RAT (Q9Z0U4) Gamma-aminobutyric acid type B receptor, subunit 1|
           precursor (GABA-B receptor 1) (GABA-B-R1) (Gb1)
          Length = 991

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 211 SSATCSSGEWLTPPRH-RTNSIPTRVSRAIAI-ALCP 315
           S + CS G+W TP  H + N  P    RA+ I AL P
Sbjct: 140 SRSVCSQGQWSTPKPHCQVNRTPHSERRAVYIGALFP 176

>LIMK1_XENLA (O42565) LIM domain kinase 1 (EC 2.7.11.1) (LIMK-1) (xLIMK1)|
          Length = 615

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 33  IPTDIIIGDPFIRPNGTPVQSSPYVHFGGTDQSQSHISQL 152
           I + I IGD  +  NGTP++S P        Q  S + QL
Sbjct: 202 IQSSIHIGDRILEINGTPIRSVPLDEIDVLIQETSRLLQL 241

>HEX3_ADEG1 (Q64754) Peripentonal hexon-associated protein (Protein IIIA)|
          Length = 575

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = +2

Query: 2   HVNGSAQLVFNSNRYHHRRPVYSAQWDA 85
           ++ GS+Q +  +N + + +P++ A+WDA
Sbjct: 183 NLGGSSQNINLTNAFENLKPIWGARWDA 210

>CG021_HUMAN (Q9BVT8) Protein C7orf21 (SB144)|
          Length = 246

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 54  GDPFIRPNGTPVQSSPYVHFGGTD 125
           GDP  +P+GTP  S P      TD
Sbjct: 37  GDPLPQPSGTPTPSQPSAAMAATD 60

>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 181 SSATPAAHALSSATCSSGEWLTPPRHRTNSIPTRVSRAIAIALCPAPF 324
           SS  P+  A   A   S EW  PPR  ++++  +  R  ++++ P  F
Sbjct: 741 SSLRPSLEA--QAVAPSAEWSKPPRSSSSAVEDQKRRPHSLSIMPEAF 786

>PTP2_NPVOP (O10273) Tyrosine-protein phosphatase 2 (EC 3.1.3.48)|
           (Protein-tyrosine phosphatase 2)
          Length = 160

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 230 EEHVAEDNAWAAGVALLRFVEQHAVAEL 147
           +EHV     +    A+LRF+E HA+A +
Sbjct: 8   DEHVFVGGYYGDNEAMLRFIENHAIASV 35

>GABR1_HUMAN (Q9UBS5) Gamma-aminobutyric acid type B receptor, subunit 1|
           precursor (GABA-B receptor 1) (GABA-B-R1) (Gb1)
          Length = 961

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 211 SSATCSSGEWLTPPRH-RTNSIPTRVSRAIAI-ALCP 315
           S + CS G+W TP  H + N  P    RA+ I AL P
Sbjct: 141 SRSICSQGQWSTPKPHCQVNRTPHSERRAVYIGALFP 177

>GABR1_MOUSE (Q9WV18) Gamma-aminobutyric acid type B receptor, subunit 1|
           precursor (GABA-B receptor 1) (GABA-B-R1) (Gb1)
          Length = 960

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 211 SSATCSSGEWLTPPRH-RTNSIPTRVSRAIAI-ALCP 315
           S + CS G+W TP  H + N  P    RA+ I AL P
Sbjct: 140 SRSICSQGQWSTPKPHCQVNRTPHSERRAVYIGALFP 176


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,764,373
Number of Sequences: 219361
Number of extensions: 688964
Number of successful extensions: 2205
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2205
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)