ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet32c10 |
|---|---|
| Clone Library Name | barley_pub |
>EF1A_WHEAT (Q03033) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 37.4 bits (85), Expect = 0.010 Identities = 17/17 (100%), Positives = 17/17 (100%) Frame = -2 Query: 263 TVAVGVIKGVEKKDPTG 213 TVAVGVIKGVEKKDPTG Sbjct: 420 TVAVGVIKGVEKKDPTG 436
>EF1A_VICFA (O24534) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 35.0 bits (79), Expect = 0.050 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -2 Query: 263 TVAVGVIKGVEKKDPTG 213 TVAVGVIK VEKKDPTG Sbjct: 420 TVAVGVIKSVEKKDPTG 436
>EF1A_SOYBN (P25698) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 35.0 bits (79), Expect = 0.050 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -2 Query: 263 TVAVGVIKGVEKKDPTG 213 TVAVGVIK VEKKDPTG Sbjct: 420 TVAVGVIKNVEKKDPTG 436
>EF1A_PEA (Q41011) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 35.0 bits (79), Expect = 0.050 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -2 Query: 263 TVAVGVIKGVEKKDPTG 213 TVAVGVIK VEKKDPTG Sbjct: 420 TVAVGVIKSVEKKDPTG 436
>EF1A_ORYSA (O64937) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 35.0 bits (79), Expect = 0.050 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -2 Query: 263 TVAVGVIKGVEKKDPTG 213 TVAVGVIK VEKKDPTG Sbjct: 420 TVAVGVIKNVEKKDPTG 436
>EF1A_MAIZE (Q41803) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 35.0 bits (79), Expect = 0.050 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -2 Query: 263 TVAVGVIKGVEKKDPTG 213 TVAVGVIK VEKKDPTG Sbjct: 420 TVAVGVIKSVEKKDPTG 436
>EF1A2_DAUCA (P34823) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 35.0 bits (79), Expect = 0.050 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -2 Query: 263 TVAVGVIKGVEKKDPTG 213 TVAVGVIK VEKKDPTG Sbjct: 420 TVAVGVIKSVEKKDPTG 436
>EF1A1_DAUCA (P29521) Elongation factor 1-alpha (EF-1-alpha)| Length = 449 Score = 35.0 bits (79), Expect = 0.050 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -2 Query: 263 TVAVGVIKGVEKKDPTG 213 TVAVGVIK VEKKDPTG Sbjct: 420 TVAVGVIKAVEKKDPTG 436
>EF1A_TOBAC (P43643) Elongation factor 1-alpha (EF-1-alpha) (Vitronectin-like| adhesion protein 1) (PVN1) Length = 447 Score = 33.9 bits (76), Expect = 0.11 Identities = 15/17 (88%), Positives = 16/17 (94%) Frame = -2 Query: 263 TVAVGVIKGVEKKDPTG 213 TVAVGVIK V+KKDPTG Sbjct: 420 TVAVGVIKNVDKKDPTG 436
>EF1A_ARATH (P13905) Elongation factor 1-alpha (EF-1-alpha) (eEF-1A)| Length = 449 Score = 33.9 bits (76), Expect = 0.11 Identities = 15/17 (88%), Positives = 16/17 (94%) Frame = -2 Query: 263 TVAVGVIKGVEKKDPTG 213 TVAVGVIK V+KKDPTG Sbjct: 420 TVAVGVIKSVDKKDPTG 436
>EF1A_LYCES (P17786) Elongation factor 1-alpha (EF-1-alpha)| Length = 448 Score = 33.5 bits (75), Expect = 0.15 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = -2 Query: 263 TVAVGVIKGVEKKDPTG 213 TVAVGV+K V+KKDPTG Sbjct: 420 TVAVGVVKNVDKKDPTG 436
>EF1A2_HORVU (Q40034) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 33.5 bits (75), Expect = 0.15 Identities = 15/17 (88%), Positives = 16/17 (94%) Frame = -2 Query: 263 TVAVGVIKGVEKKDPTG 213 TVAVGVIK VEKK+PTG Sbjct: 420 TVAVGVIKSVEKKEPTG 436
>EF1A1_HORVU (P34824) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 33.5 bits (75), Expect = 0.15 Identities = 15/17 (88%), Positives = 16/17 (94%) Frame = -2 Query: 263 TVAVGVIKGVEKKDPTG 213 TVAVGVIK VEKK+PTG Sbjct: 420 TVAVGVIKSVEKKEPTG 436
>EF1A_MANES (O49169) Elongation factor 1-alpha (EF-1-alpha)| Length = 449 Score = 33.5 bits (75), Expect = 0.15 Identities = 15/17 (88%), Positives = 16/17 (94%) Frame = -2 Query: 263 TVAVGVIKGVEKKDPTG 213 TVAVGVIK VEKKDP+G Sbjct: 420 TVAVGVIKSVEKKDPSG 436
>EF1A_EIMBO (Q07051) Elongation factor 1-alpha (EF-1-alpha) (Fragment)| Length = 346 Score = 30.0 bits (66), Expect = 1.6 Identities = 14/17 (82%), Positives = 15/17 (88%) Frame = -2 Query: 263 TVAVGVIKGVEKKDPTG 213 TVAVGVIKGVEKK+ G Sbjct: 317 TVAVGVIKGVEKKEAGG 333
>MDR4_ARATH (O80725) Multidrug resistance protein 4 (P-glycoprotein 4)| Length = 1286 Score = 29.3 bits (64), Expect = 2.8 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +1 Query: 121 ESEATKAMTANKILPLDSAYFFLMAALVTLAPVGSFFSTPLMT 249 E E TK + K+ ++ FL+ L TL +G+ PLMT Sbjct: 39 EHEKTKTVPFYKLFAFADSFDFLLMILGTLGSIGNGLGFPLMT 81
>LMO6_HUMAN (O43900) LIM domain only protein 6 (Triple LIM domain protein 6)| Length = 615 Score = 28.5 bits (62), Expect = 4.7 Identities = 13/45 (28%), Positives = 19/45 (42%) Frame = -1 Query: 258 CCRCHQGRGEEGPHRCQGYQGCHQEEIGAI*RKDFVRGHCFCCFR 124 CC C++ R E C + G Q ++ + CFCC R Sbjct: 299 CCACYEARHAEYCDGCGEHIGLDQGQMAYEGQHWHASDRCFCCSR 343
>EF1A_COCIM (Q96WZ1) Elongation factor 1-alpha (EF-1-alpha)| Length = 460 Score = 28.5 bits (62), Expect = 4.7 Identities = 13/17 (76%), Positives = 14/17 (82%) Frame = -2 Query: 263 TVAVGVIKGVEKKDPTG 213 TVAVGVIK VEK + TG Sbjct: 431 TVAVGVIKSVEKSEKTG 447
>LMO6_MOUSE (Q80VL3) LIM domain only protein 6 (Triple LIM domain protein 6)| Length = 624 Score = 28.5 bits (62), Expect = 4.7 Identities = 13/45 (28%), Positives = 19/45 (42%) Frame = -1 Query: 258 CCRCHQGRGEEGPHRCQGYQGCHQEEIGAI*RKDFVRGHCFCCFR 124 CC C++ R E C + G Q ++ + CFCC R Sbjct: 299 CCACYEARHAEYCDGCGEHIGLDQGQMAYEGQHWHASDRCFCCSR 343
>EF1A_EUGGR (P14963) Elongation factor 1-alpha (EF-1-alpha)| Length = 445 Score = 28.1 bits (61), Expect = 6.2 Identities = 13/17 (76%), Positives = 14/17 (82%) Frame = -2 Query: 263 TVAVGVIKGVEKKDPTG 213 TVAVGVIK V KK+ TG Sbjct: 419 TVAVGVIKSVNKKENTG 435
>EF1A_CANAL (P16017) Elongation factor 1-alpha (EF-1-alpha)| Length = 458 Score = 28.1 bits (61), Expect = 6.2 Identities = 13/17 (76%), Positives = 13/17 (76%) Frame = -2 Query: 263 TVAVGVIKGVEKKDPTG 213 TVAVGVIK VEK D G Sbjct: 430 TVAVGVIKSVEKSDKAG 446
>AMD_RAT (P14925) Peptidyl-glycine alpha-amidating monooxygenase precursor| (EC 1.14.17.3) (PAM) Length = 976 Score = 28.1 bits (61), Expect = 6.2 Identities = 11/32 (34%), Positives = 21/32 (65%) Frame = +1 Query: 46 HRSLAEAGIEIQ*LNDRQIIARPG*ESEATKA 141 HRS+ +AGIE+Q + + + + P E++ T + Sbjct: 817 HRSVKKAGIEVQEIKEAEAVVEPKVENKPTSS 848
>EF1A_YARLI (O59949) Elongation factor 1-alpha (EF-1-alpha)| Length = 460 Score = 28.1 bits (61), Expect = 6.2 Identities = 13/17 (76%), Positives = 13/17 (76%) Frame = -2 Query: 263 TVAVGVIKGVEKKDPTG 213 TVAVGVIK VEK D G Sbjct: 431 TVAVGVIKSVEKSDKAG 447
>EF1A_ARTSA (P02993) Elongation factor 1-alpha (EF-1-alpha)| Length = 461 Score = 27.7 bits (60), Expect = 8.1 Identities = 13/16 (81%), Positives = 13/16 (81%) Frame = -2 Query: 263 TVAVGVIKGVEKKDPT 216 TVAVGVIK V KDPT Sbjct: 431 TVAVGVIKSVNFKDPT 446
>EF1C_PORPU (P50256) Elongation factor 1-alpha C (EF-1-alpha)| Length = 449 Score = 27.7 bits (60), Expect = 8.1 Identities = 13/17 (76%), Positives = 14/17 (82%) Frame = -2 Query: 263 TVAVGVIKGVEKKDPTG 213 TVAVGVIK VEKK+ G Sbjct: 424 TVAVGVIKSVEKKEVEG 440 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,255,056 Number of Sequences: 219361 Number of extensions: 422350 Number of successful extensions: 1092 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 1069 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1092 length of database: 80,573,946 effective HSP length: 63 effective length of database: 66,754,203 effective search space used: 1602100872 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
