ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet32c08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK121989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109C03, full insert sequence Length = 1277 Score = 133 bits (67), Expect = 5e-28 Identities = 97/107 (90%) Strand = Plus / Minus Query: 295 ggagcaaggcccactgcatctgaccccttcatgatcctcatcctcctgcagctgtctgtg 354 |||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||| Sbjct: 931 ggagcaaggcccactgcatctgaccccttcataatcctcagcctcctacagctgtctgtg 872 Query: 355 aacatccgccatggaacatctccaaccaacatccaatcaccatcctt 401 ||||| ||||| |||||||| ||||| | ||||||||| ||||||| Sbjct: 871 aacattcgccacggaacatcaccaacaagcatccaatcttcatcctt 825
>dbj|AK063854.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-D03, full insert sequence Length = 552 Score = 133 bits (67), Expect = 5e-28 Identities = 97/107 (90%) Strand = Plus / Minus Query: 295 ggagcaaggcccactgcatctgaccccttcatgatcctcatcctcctgcagctgtctgtg 354 |||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||| Sbjct: 206 ggagcaaggcccactgcatctgaccccttcataatcctcagcctcctacagctgtctgtg 147 Query: 355 aacatccgccatggaacatctccaaccaacatccaatcaccatcctt 401 ||||| ||||| |||||||| ||||| | ||||||||| ||||||| Sbjct: 146 aacattcgccacggaacatcaccaacaagcatccaatcttcatcctt 100
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 97.6 bits (49), Expect = 3e-17 Identities = 58/61 (95%) Strand = Plus / Minus Query: 299 caaggcccactgcatctgaccccttcatgatcctcatcctcctgcagctgtctgtgaaca 358 |||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| Sbjct: 13191145 caaggcccactgcatctgaccccttcataatcctcagcctcctacagctgtctgtgaaca 13191086 Query: 359 t 359 | Sbjct: 13191085 t 13191085
>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0012F14 Length = 168629 Score = 97.6 bits (49), Expect = 3e-17 Identities = 58/61 (95%) Strand = Plus / Minus Query: 299 caaggcccactgcatctgaccccttcatgatcctcatcctcctgcagctgtctgtgaaca 358 |||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| Sbjct: 108333 caaggcccactgcatctgaccccttcataatcctcagcctcctacagctgtctgtgaaca 108274 Query: 359 t 359 | Sbjct: 108273 t 108273
>emb|X68215.1|PSPIAA45R P.sativum mRNA for pIAA4/5.1 Length = 1022 Score = 69.9 bits (35), Expect = 6e-09 Identities = 38/39 (97%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatcctt 401 |||||||||||||||||| |||||||||||||||||||| Sbjct: 587 ccatggaacatctccaactaacatccaatcaccatcctt 549
>emb|X68216.1|PSIAA45D P.sativum PS-IAA4/5 gene Length = 3976 Score = 69.9 bits (35), Expect = 6e-09 Identities = 38/39 (97%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatcctt 401 |||||||||||||||||| |||||||||||||||||||| Sbjct: 3272 ccatggaacatctccaactaacatccaatcaccatcctt 3234
>dbj|AP006680.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45D03, TM0375a, complete sequence Length = 58157 Score = 69.9 bits (35), Expect = 6e-09 Identities = 38/39 (97%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatcctt 401 |||||||||||||||||||| |||||||||||||||||| Sbjct: 21980 ccatggaacatctccaaccagcatccaatcaccatcctt 21942
>ref|NM_188615.1| Oryza sativa (japonica cultivar-group), Ozsa8218 predicted mRNA Length = 846 Score = 65.9 bits (33), Expect = 9e-08 Identities = 78/93 (83%) Strand = Plus / Minus Query: 309 tgcatctgaccccttcatgatcctcatcctcctgcagctgtctgtgaacatccgccatgg 368 ||||||||| || |||||||| || | ||||| ||| ||| ||||||||| |||||| Sbjct: 798 tgcatctgagcctttcatgattctgagcctccggcaagagtcggtgaacatctcccatgg 739 Query: 369 aacatctccaaccaacatccaatcaccatcctt 401 |||||| ||||||| |||||| ||||||||||| Sbjct: 738 aacatcaccaaccagcatccagtcaccatcctt 706
>dbj|AK104654.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-C04, full insert sequence Length = 1209 Score = 65.9 bits (33), Expect = 9e-08 Identities = 78/93 (83%) Strand = Plus / Minus Query: 309 tgcatctgaccccttcatgatcctcatcctcctgcagctgtctgtgaacatccgccatgg 368 ||||||||| || |||||||| || | ||||| ||| ||| ||||||||| |||||| Sbjct: 782 tgcatctgagcctttcatgattctgagcctccggcaagagtcggtgaacatctcccatgg 723 Query: 369 aacatctccaaccaacatccaatcaccatcctt 401 |||||| ||||||| |||||| ||||||||||| Sbjct: 722 aacatcaccaaccagcatccagtcaccatcctt 690
>dbj|AK072001.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094L17, full insert sequence Length = 1291 Score = 65.9 bits (33), Expect = 9e-08 Identities = 78/93 (83%) Strand = Plus / Minus Query: 309 tgcatctgaccccttcatgatcctcatcctcctgcagctgtctgtgaacatccgccatgg 368 ||||||||| || |||||||| || | ||||| ||| ||| ||||||||| |||||| Sbjct: 879 tgcatctgagcctttcatgattctgagcctccggcaagagtcggtgaacatctcccatgg 820 Query: 369 aacatctccaaccaacatccaatcaccatcctt 401 |||||| ||||||| |||||| ||||||||||| Sbjct: 819 aacatcaccaaccagcatccagtcaccatcctt 787
>dbj|AK066156.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013054L16, full insert sequence Length = 1194 Score = 65.9 bits (33), Expect = 9e-08 Identities = 78/93 (83%) Strand = Plus / Minus Query: 309 tgcatctgaccccttcatgatcctcatcctcctgcagctgtctgtgaacatccgccatgg 368 ||||||||| || |||||||| || | ||||| ||| ||| ||||||||| |||||| Sbjct: 830 tgcatctgagcctttcatgattctgagcctccggcaagagtcggtgaacatctcccatgg 771 Query: 369 aacatctccaaccaacatccaatcaccatcctt 401 |||||| ||||||| |||||| ||||||||||| Sbjct: 770 aacatcaccaaccagcatccagtcaccatcctt 738
>gb|AY137962.1| Mirabilis jalapa clone RS-31 Aux/IAA2 mRNA, partial cds Length = 278 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatc 398 ||||||||||||||| |||||||||||||||||||| Sbjct: 210 ccatggaacatctccgaccaacatccaatcaccatc 175
>emb|AJ306831.1|PTR306831 Populus tremula x Populus tremuloides mRNA for aux/IAA protein (IAA8 gene) Length = 799 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatc 398 |||||||||||||||||||||||||||||| ||||| Sbjct: 636 ccatggaacatctccaaccaacatccaatctccatc 601
>gb|AY062215.1| Antirrhinum majus auxin-induced AUX/IAA1 mRNA, partial cds Length = 517 Score = 61.9 bits (31), Expect = 1e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatcctt 401 |||||| ||||||||||||||||||||||| |||||||| Sbjct: 456 ccatggcacatctccaaccaacatccaatctccatcctt 418
>dbj|AB004933.1| Vigna radiata mRNA for Aux22e, complete cds Length = 1006 Score = 61.9 bits (31), Expect = 1e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatcctt 401 |||||||||||||||||||| |||||| ||||||||||| Sbjct: 611 ccatggaacatctccaaccagcatccagtcaccatcctt 573
>emb|AJ458442.1|GHI458442 Gossypium hirsutum mRNA for IAA16 protein Length = 1020 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 362 gccatggaacatctccaaccaacatccaatcaccatcctta 402 |||||||||||||||| |||||||||||||| || |||||| Sbjct: 625 gccatggaacatctcccaccaacatccaatctccgtcctta 585
>ref|NM_113203.3| Arabidopsis thaliana IAA2; transcription factor AT3G23030 (IAA2) mRNA, complete cds Length = 927 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatc 398 |||||||||||| |||||||||||||| |||||||| Sbjct: 548 ccatggaacatcaccaaccaacatccagtcaccatc 513
>gb|AF332392.1| Arabidopsis thaliana clone C00010 (f) auxin-inducible protein IAA2 (At3g23030) mRNA, complete cds Length = 525 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatc 398 |||||||||||| |||||||||||||| |||||||| Sbjct: 447 ccatggaacatcaccaaccaacatccagtcaccatc 412
>emb|BX824273.1|CNS0A6WP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH35ZE04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 773 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatc 398 |||||||||||| |||||||||||||| |||||||| Sbjct: 444 ccatggaacatcaccaaccaacatccagtcaccatc 409
>gb|AY090553.1| Zinnia elegans auxin-regulated protein (IAA8) mRNA, complete cds Length = 1499 Score = 56.0 bits (28), Expect = 9e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatcctta 402 |||||| ||||||||||| | ||||||||||||||||||| Sbjct: 1151 ccatggtacatctccaacaagcatccaatcaccatcctta 1112
>dbj|AB026655.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MXC7 Length = 79284 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Plus Query: 363 ccatggaacatctccaaccaacatccaatcaccatc 398 |||||||||||| |||||||||||||| |||||||| Sbjct: 21761 ccatggaacatcaccaaccaacatccagtcaccatc 21796
>gb|AF027157.1|AF027157 Arabidopsis thaliana auxin-responsive protein IAA2 gene, complete cds Length = 1341 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatc 398 |||||||||||| |||||||||||||| |||||||| Sbjct: 963 ccatggaacatcaccaaccaacatccagtcaccatc 928
>gb|L15449.1|ATHIAA2A Arabidopsis thaliana auxin-responsive protein (IAA2) mRNA, 5' partial cds Length = 522 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatc 398 |||||||||||| |||||||||||||| |||||||| Sbjct: 447 ccatggaacatcaccaaccaacatccagtcaccatc 412
>dbj|AB004932.1| Vigna radiata mRNA for Aux22d, complete cds Length = 936 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatc 398 |||||||||||||||||||| |||||| |||||||| Sbjct: 596 ccatggaacatctccaaccagcatccagtcaccatc 561
>gb|AC158504.10| Medicago truncatula clone mth2-151m4, complete sequence Length = 117136 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 363 ccatggaacatctccaaccaacatccaatcaccatcctt 401 |||||||||||| ||||| | |||||||||||||||||| Sbjct: 95755 ccatggaacatcaccaactagcatccaatcaccatcctt 95793
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatcctt 401 |||||||||||| ||||||| |||||| ||||||||||| Sbjct: 7251222 ccatggaacatcaccaaccagcatccagtcaccatcctt 7251184
>dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0485D09 Length = 150594 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatcctt 401 |||||||||||| ||||||| |||||| ||||||||||| Sbjct: 145870 ccatggaacatcaccaaccagcatccagtcaccatcctt 145832
>gb|AF123507.1| Nicotiana tabacum Nt-iaa4.5 deduced protein mRNA, complete cds Length = 993 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatcctt 401 |||||| ||||||||||| | |||||||||||||||||| Sbjct: 603 ccatggtacatctccaactagcatccaatcaccatcctt 565
>dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0431F01 Length = 143209 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatcctt 401 |||||||||||| ||||||| |||||| ||||||||||| Sbjct: 52652 ccatggaacatcaccaaccagcatccagtcaccatcctt 52614
>dbj|AP006634.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT15O18, TM0086, complete sequence Length = 133572 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatcctt 401 |||||||||||||||||| | |||||| ||||||||||| Sbjct: 27195 ccatggaacatctccaactagcatccagtcaccatcctt 27157
>emb|X68217.1|PSIAA6R P.sativum mRNA for auxin-induced protein (clone pIAA6) Length = 702 Score = 52.0 bits (26), Expect = 0.001 Identities = 74/90 (82%) Strand = Plus / Minus Query: 309 tgcatctgaccccttcatgatcctcatcctcctgcagctgtctgtgaacatccgccatgg 368 ||||||||||| |||||| ||||||| |||| |||| || | |||||| ||| || Sbjct: 424 tgcatctgacctcttcataatcctcagcctcttgcatgactcaataaacatctcccaagg 365 Query: 369 aacatctccaaccaacatccaatcaccatc 398 ||||||||||||| ||||||||||||||| Sbjct: 364 gacatctccaaccagcatccaatcaccatc 335
>ref|NM_130267.3| Arabidopsis thaliana IAA20; transcription factor AT2G46990 (IAA20) mRNA, complete cds Length = 652 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 354 gaacatccgccatggaacatctccaaccaacatccaatcaccatcctta 402 ||||||| ||| |||||||||||||||| |||||| ||||| |||||| Sbjct: 483 gaacatctcccaaggaacatctccaaccatcatccagtcaccttcctta 435
>gb|AF348576.1| Arabidopsis thaliana clone C00049 (f) auxin-induced protein IAA20 (At2g46990) mRNA, complete cds Length = 528 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 354 gaacatccgccatggaacatctccaaccaacatccaatcaccatcctta 402 ||||||| ||| |||||||||||||||| |||||| ||||| |||||| Sbjct: 477 gaacatctcccaaggaacatctccaaccatcatccagtcaccttcctta 429
>dbj|AK117233.1| Arabidopsis thaliana At2g46990 mRNA for putative auxin-induced protein, complete cds, clone: RAFL16-78-L02 Length = 644 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 354 gaacatccgccatggaacatctccaaccaacatccaatcaccatcctta 402 ||||||| ||| |||||||||||||||| |||||| ||||| |||||| Sbjct: 483 gaacatctcccaaggaacatctccaaccatcatccagtcaccttcctta 435
>emb|X68218.1|PSIAA6D P.sativum gene for PS-IAA6 Length = 5923 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 370 acatctccaaccaacatccaatcaccatc 398 ||||||||||||| ||||||||||||||| Sbjct: 4411 acatctccaaccagcatccaatcaccatc 4383 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 309 tgcatctgaccccttcatgatcctcatcctcctgca 344 ||||||||||| |||||| ||||||| |||| |||| Sbjct: 4829 tgcatctgacctcttcataatcctcagcctcttgca 4794
>gb|U49076.1|ATU49076 Arabidopsis thaliana early auxin-induced (IAA20) mRNA, partial cds Length = 624 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 354 gaacatccgccatggaacatctccaaccaacatccaatcaccatcctta 402 ||||||| ||| |||||||||||||||| |||||| ||||| |||||| Sbjct: 451 gaacatctcccaaggaacatctccaaccatcatccagtcaccttcctta 403
>ref|NM_100334.2| Arabidopsis thaliana IAA12 (BODENLOS); transcription factor AT1G04550 (IAA12) transcript variant AT1G04550.2 mRNA, complete cds Length = 1198 Score = 48.1 bits (24), Expect = 0.022 Identities = 36/40 (90%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatcctta 402 |||||||||||||||||| | ||||||||| || |||||| Sbjct: 774 ccatggaacatctccaacaagcatccaatccccttcctta 735
>ref|NM_179258.1| Arabidopsis thaliana IAA12 (BODENLOS); transcription factor AT1G04550 (IAA12) transcript variant AT1G04550.1 mRNA, complete cds Length = 1352 Score = 48.1 bits (24), Expect = 0.022 Identities = 36/40 (90%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatcctta 402 |||||||||||||||||| | ||||||||| || |||||| Sbjct: 855 ccatggaacatctccaacaagcatccaatccccttcctta 816
>ref|NM_117536.2| Arabidopsis thaliana IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE); transcription factor AT4G14560 (IAA1) mRNA, complete cds Length = 830 Score = 48.1 bits (24), Expect = 0.022 Identities = 33/36 (91%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatc 398 |||||||||||| || |||||||||||||| ||||| Sbjct: 555 ccatggaacatcaccgaccaacatccaatctccatc 520
>ref|NM_125965.2| Arabidopsis thaliana IAA9; transcription factor AT5G65670 (IAA9) transcript variant AT5G65670.2 mRNA, complete cds Length = 1531 Score = 48.1 bits (24), Expect = 0.022 Identities = 33/36 (91%) Strand = Plus / Minus Query: 367 ggaacatctccaaccaacatccaatcaccatcctta 402 |||||||||||||| | |||||| |||||||||||| Sbjct: 1178 ggaacatctccaacaagcatccagtcaccatcctta 1143
>ref|NM_180944.1| Arabidopsis thaliana IAA9; transcription factor AT5G65670 (IAA9) transcript variant AT5G65670.1 mRNA, complete cds Length = 1537 Score = 48.1 bits (24), Expect = 0.022 Identities = 33/36 (91%) Strand = Plus / Minus Query: 367 ggaacatctccaaccaacatccaatcaccatcctta 402 |||||||||||||| | |||||| |||||||||||| Sbjct: 1178 ggaacatctccaacaagcatccagtcaccatcctta 1143
>gb|AY070451.1| Arabidopsis thaliana At5g65670 mRNA sequence Length = 1449 Score = 48.1 bits (24), Expect = 0.022 Identities = 33/36 (91%) Strand = Plus / Minus Query: 367 ggaacatctccaaccaacatccaatcaccatcctta 402 |||||||||||||| | |||||| |||||||||||| Sbjct: 1150 ggaacatctccaacaagcatccagtcaccatcctta 1115
>emb|Z97336.1|ATFCA1 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 1 Length = 206606 Score = 48.1 bits (24), Expect = 0.022 Identities = 33/36 (91%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatc 398 |||||||||||| || |||||||||||||| ||||| Sbjct: 119712 ccatggaacatcaccgaccaacatccaatctccatc 119677
>gb|AY133714.1| Arabidopsis thaliana clone C00009 auxin-responsive protein IAA1 (At4g14560) mRNA, complete cds Length = 525 Score = 48.1 bits (24), Expect = 0.022 Identities = 33/36 (91%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatc 398 |||||||||||| || |||||||||||||| ||||| Sbjct: 438 ccatggaacatcaccgaccaacatccaatctccatc 403
>gb|AF332398.1| Arabidopsis thaliana auxin-induced protein, IAA12 (At1g04550) mRNA, complete cds Length = 720 Score = 48.1 bits (24), Expect = 0.022 Identities = 36/40 (90%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatcctta 402 |||||||||||||||||| | ||||||||| || |||||| Sbjct: 606 ccatggaacatctccaacaagcatccaatccccttcctta 567
>gb|AY096535.1| Arabidopsis thaliana auxin-induced protein IAA12 (At1g04550) mRNA, complete cds Length = 751 Score = 48.1 bits (24), Expect = 0.022 Identities = 36/40 (90%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatcctta 402 |||||||||||||||||| | ||||||||| || |||||| Sbjct: 606 ccatggaacatctccaacaagcatccaatccccttcctta 567
>gb|AY065240.1| Arabidopsis thaliana auxin-induced protein IAA12 (At1g04550) mRNA, complete cds Length = 1187 Score = 48.1 bits (24), Expect = 0.022 Identities = 36/40 (90%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatcctta 402 |||||||||||||||||| | ||||||||| || |||||| Sbjct: 748 ccatggaacatctccaacaagcatccaatccccttcctta 709
>emb|AL161539.2|ATCHRIV39 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 39 Length = 197976 Score = 48.1 bits (24), Expect = 0.022 Identities = 33/36 (91%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatc 398 |||||||||||| || |||||||||||||| ||||| Sbjct: 65208 ccatggaacatcaccgaccaacatccaatctccatc 65173
>emb|AL021684.1|ATF6H11 Arabidopsis thaliana DNA chromosome 5, BAC clone F6H11 (ESSAII project) Length = 118086 Score = 48.1 bits (24), Expect = 0.022 Identities = 33/36 (91%) Strand = Plus / Plus Query: 367 ggaacatctccaaccaacatccaatcaccatcctta 402 |||||||||||||| | |||||| |||||||||||| Sbjct: 111849 ggaacatctccaacaagcatccagtcaccatcctta 111884
>gb|AC004411.3| Arabidopsis thaliana chromosome 2 clone F14M4 map CIC06C03, complete sequence Length = 106329 Score = 48.1 bits (24), Expect = 0.022 Identities = 33/36 (91%) Strand = Plus / Plus Query: 367 ggaacatctccaaccaacatccaatcaccatcctta 402 |||||||||||||||| |||||| ||||| |||||| Sbjct: 50885 ggaacatctccaaccatcatccagtcaccttcctta 50920
>gb|AF334715.1| Arabidopsis thaliana clone C00016 (e) auxin-induced protein IAA9 (At5g65670) mRNA, complete cds Length = 1017 Score = 48.1 bits (24), Expect = 0.022 Identities = 33/36 (91%) Strand = Plus / Minus Query: 367 ggaacatctccaaccaacatccaatcaccatcctta 402 |||||||||||||| | |||||| |||||||||||| Sbjct: 905 ggaacatctccaacaagcatccagtcaccatcctta 870
>emb|BX841571.1|CNS09YGD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH86ZH12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 771 Score = 48.1 bits (24), Expect = 0.022 Identities = 33/36 (91%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatc 398 |||||||||||| || |||||||||||||| ||||| Sbjct: 540 ccatggaacatcaccgaccaacatccaatctccatc 505
>gb|AY089108.1| Arabidopsis thaliana clone 33860 mRNA, complete sequence Length = 801 Score = 48.1 bits (24), Expect = 0.022 Identities = 33/36 (91%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatc 398 |||||||||||| || |||||||||||||| ||||| Sbjct: 553 ccatggaacatcaccgaccaacatccaatctccatc 518
>gb|AY088042.1| Arabidopsis thaliana clone 40608 mRNA, complete sequence Length = 1194 Score = 48.1 bits (24), Expect = 0.022 Identities = 36/40 (90%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatcctta 402 |||||||||||||||||| | ||||||||| || |||||| Sbjct: 774 ccatggaacatctccaacaagcatccaatccccttcctta 735
>gb|AY087089.1| Arabidopsis thaliana clone 31563 mRNA, complete sequence Length = 1456 Score = 48.1 bits (24), Expect = 0.022 Identities = 33/36 (91%) Strand = Plus / Minus Query: 367 ggaacatctccaaccaacatccaatcaccatcctta 402 |||||||||||||| | |||||| |||||||||||| Sbjct: 1182 ggaacatctccaacaagcatccagtcaccatcctta 1147
>dbj|AK176546.1| Arabidopsis thaliana mRNA for auxin-responsive protein IAA1, complete cds, clone: RAFL25-06-K23 Length = 817 Score = 48.1 bits (24), Expect = 0.022 Identities = 33/36 (91%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatc 398 |||||||||||| || |||||||||||||| ||||| Sbjct: 560 ccatggaacatcaccgaccaacatccaatctccatc 525
>dbj|AB010075.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPA24 Length = 84440 Score = 48.1 bits (24), Expect = 0.022 Identities = 33/36 (91%) Strand = Plus / Minus Query: 367 ggaacatctccaaccaacatccaatcaccatcctta 402 |||||||||||||| | |||||| |||||||||||| Sbjct: 7956 ggaacatctccaacaagcatccagtcaccatcctta 7921
>gb|U18414.1|ATU18414 Arabidopsis thaliana IAA12 (IAA12) gene, complete cds Length = 1125 Score = 48.1 bits (24), Expect = 0.022 Identities = 36/40 (90%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatcctta 402 |||||||||||||||||| | ||||||||| || |||||| Sbjct: 705 ccatggaacatctccaacaagcatccaatccccttcctta 666
>gb|U18411.1|ATU18411 Arabidopsis thaliana IAA9 (IAA9) gene, complete cds Length = 1425 Score = 48.1 bits (24), Expect = 0.022 Identities = 33/36 (91%) Strand = Plus / Minus Query: 367 ggaacatctccaaccaacatccaatcaccatcctta 402 |||||||||||||| | |||||| |||||||||||| Sbjct: 1138 ggaacatctccaacaagcatccagtcaccatcctta 1103
>gb|AC002376.1|T1G11 Sequence of BAC T1G11 from Arabidopsis thaliana chromosome 1, complete sequence Length = 100079 Score = 48.1 bits (24), Expect = 0.022 Identities = 36/40 (90%) Strand = Plus / Plus Query: 363 ccatggaacatctccaaccaacatccaatcaccatcctta 402 |||||||||||||||||| | ||||||||| || |||||| Sbjct: 91542 ccatggaacatctccaacaagcatccaatccccttcctta 91581
>gb|L15448.1|ATHIAA1A Arabidopsis thaliana auxin-responsive protein (IAA1) mRNA, 5' partial cds Length = 504 Score = 48.1 bits (24), Expect = 0.022 Identities = 33/36 (91%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatc 398 |||||||||||| || |||||||||||||| ||||| Sbjct: 438 ccatggaacatcaccgaccaacatccaatctccatc 403
>dbj|AB029148.1| Cucumis sativus mRNA expressed in cucumber hypocotyls, complete cds Length = 1187 Score = 48.1 bits (24), Expect = 0.022 Identities = 30/32 (93%) Strand = Plus / Minus Query: 367 ggaacatctccaaccaacatccaatcaccatc 398 |||||||||||||| | ||||||||||||||| Sbjct: 718 ggaacatctccaacaagcatccaatcaccatc 687
>ref|XM_469684.1| Oryza sativa (japonica cultivar-group), mRNA Length = 811 Score = 46.1 bits (23), Expect = 0.087 Identities = 41/47 (87%) Strand = Plus / Minus Query: 355 aacatccgccatggaacatctccaaccaacatccaatcaccatcctt 401 |||||| |||| || ||||||||||| | |||||| ||||||||||| Sbjct: 717 aacatctgccacgggacatctccaacaagcatccagtcaccatcctt 671
>gb|AF373100.1| Populus tremula x Populus tremuloides auxin-regulated protein (IAA1) mRNA, complete cds Length = 1313 Score = 46.1 bits (23), Expect = 0.087 Identities = 35/39 (89%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatcctt 401 ||||||||||||||| || | ||||||||| |||||||| Sbjct: 780 ccatggaacatctcctacaagcatccaatctccatcctt 742
>emb|AJ306828.1|PTR306828 Populus tremula x Populus tremuloides mRNA for aux/IAA protein (IAA5 gene) Length = 1251 Score = 46.1 bits (23), Expect = 0.087 Identities = 41/47 (87%) Strand = Plus / Minus Query: 355 aacatccgccatggaacatctccaaccaacatccaatcaccatcctt 401 ||||||| ||| ||||||||||| || | ||||||||| |||||||| Sbjct: 835 aacatcccccaaggaacatctccgacaagcatccaatccccatcctt 789
>emb|AJ251791.1|OSA251791 Oryza sativa partial mRNA for putative IAA1 protein (iaa1 gene) Length = 1068 Score = 46.1 bits (23), Expect = 0.087 Identities = 41/47 (87%) Strand = Plus / Minus Query: 355 aacatccgccatggaacatctccaaccaacatccaatcaccatcctt 401 |||||| |||| || ||||||||||| | |||||| ||||||||||| Sbjct: 769 aacatctgccacgggacatctccaacaagcatccagtcaccatcctt 723
>dbj|AK100790.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121A20, full insert sequence Length = 1092 Score = 46.1 bits (23), Expect = 0.087 Identities = 41/47 (87%) Strand = Plus / Minus Query: 355 aacatccgccatggaacatctccaaccaacatccaatcaccatcctt 401 |||||| |||| || ||||||||||| | |||||| ||||||||||| Sbjct: 779 aacatctgccacgggacatctccaacaagcatccagtcaccatcctt 733
>dbj|AK059838.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-C11, full insert sequence Length = 1180 Score = 46.1 bits (23), Expect = 0.087 Identities = 41/47 (87%) Strand = Plus / Minus Query: 355 aacatccgccatggaacatctccaaccaacatccaatcaccatcctt 401 |||||| |||| || ||||||||||| | |||||| ||||||||||| Sbjct: 774 aacatctgccacgggacatctccaacaagcatccagtcaccatcctt 728
>dbj|D14413.1|VIRAUX22B Vigna radiata auxin-regulated mRNA Length = 1165 Score = 46.1 bits (23), Expect = 0.087 Identities = 35/39 (89%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatcctt 401 |||||| ||||||||||| | |||||| ||||||||||| Sbjct: 571 ccatggtacatctccaactagcatccagtcaccatcctt 533
>ref|NM_179874.2| Arabidopsis thaliana IAA13; transcription factor AT2G33310 (IAA13) transcript variant AT2G33310.2 mRNA, complete cds Length = 1244 Score = 44.1 bits (22), Expect = 0.34 Identities = 43/50 (86%) Strand = Plus / Minus Query: 353 tgaacatccgccatggaacatctccaaccaacatccaatcaccatcctta 402 ||||||| | |||||||||||| ||||| | ||||||||| || |||||| Sbjct: 852 tgaacattctccatggaacatcaccaacaagcatccaatctccttcctta 803
>ref|NM_128891.3| Arabidopsis thaliana IAA13; transcription factor AT2G33310 (IAA13) transcript variant AT2G33310.1 mRNA, complete cds Length = 1359 Score = 44.1 bits (22), Expect = 0.34 Identities = 43/50 (86%) Strand = Plus / Minus Query: 353 tgaacatccgccatggaacatctccaaccaacatccaatcaccatcctta 402 ||||||| | |||||||||||| ||||| | ||||||||| || |||||| Sbjct: 967 tgaacattctccatggaacatcaccaacaagcatccaatctccttcctta 918
>ref|NM_116075.2| Arabidopsis thaliana IAA30; transcription factor AT3G62100 (IAA30) mRNA, complete cds Length = 731 Score = 44.1 bits (22), Expect = 0.34 Identities = 37/42 (88%) Strand = Plus / Minus Query: 354 gaacatccgccatggaacatctccaaccaacatccaatcacc 395 ||||||| ||| |||||||||||||||| |||||| ||||| Sbjct: 515 gaacatctcccaaggaacatctccaaccatcatccagtcacc 474
>ref|NM_100305.2| Arabidopsis thaliana SHY2 (SHORT HYPOCOTYL 2); transcription factor AT1G04240 (SHY2) mRNA, complete cds Length = 1042 Score = 44.1 bits (22), Expect = 0.34 Identities = 40/46 (86%) Strand = Plus / Minus Query: 353 tgaacatccgccatggaacatctccaaccaacatccaatcaccatc 398 |||||||| |||||||||||| |||| | ||||||||||||||| Sbjct: 598 tgaacatctcccatggaacatcaccaatgagcatccaatcaccatc 553
>gb|AC149803.7| Medicago truncatula clone mth2-70e16, complete sequence Length = 96164 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 85 acacacacacatcaacttacac 106 |||||||||||||||||||||| Sbjct: 24756 acacacacacatcaacttacac 24777
>gb|AY064007.1| Arabidopsis thaliana putative auxin-induced protein IAA3 (At1g04240) mRNA, complete cds Length = 1003 Score = 44.1 bits (22), Expect = 0.34 Identities = 40/46 (86%) Strand = Plus / Minus Query: 353 tgaacatccgccatggaacatctccaaccaacatccaatcaccatc 398 |||||||| |||||||||||| |||| | ||||||||||||||| Sbjct: 598 tgaacatctcccatggaacatcaccaatgagcatccaatcaccatc 553
>emb|BX005086.9| Mouse DNA sequence from clone RP23-149N22 on chromosome 11 Contains a novel pseudogene, a sperm specific antigen 1 (Ssfa1), a glycoprotein 38 (Gp38) pseudogene and a CpG island, complete sequence Length = 192406 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 75 tgtagtagatacacacacacat 96 |||||||||||||||||||||| Sbjct: 96015 tgtagtagatacacacacacat 95994
>gb|AF332393.1| Arabidopsis thaliana clone C00011 (f) auxin-induced protein IAA3 (At1g04240) mRNA, complete cds Length = 570 Score = 44.1 bits (22), Expect = 0.34 Identities = 40/46 (86%) Strand = Plus / Minus Query: 353 tgaacatccgccatggaacatctccaaccaacatccaatcaccatc 398 |||||||| |||||||||||| |||| | ||||||||||||||| Sbjct: 502 tgaacatctcccatggaacatcaccaatgagcatccaatcaccatc 457
>gb|AF332399.1| Arabidopsis thaliana clone C00020 (e) auxin-regulated protein IAA13 (At2g33310) mRNA, complete cds Length = 741 Score = 44.1 bits (22), Expect = 0.34 Identities = 43/50 (86%) Strand = Plus / Minus Query: 353 tgaacatccgccatggaacatctccaaccaacatccaatcaccatcctta 402 ||||||| | |||||||||||| ||||| | ||||||||| || |||||| Sbjct: 637 tgaacattctccatggaacatcaccaacaagcatccaatctccttcctta 588
>gb|AC090512.3|AC090512 Homo sapiens chromosome 15 clone RP11-134K12 map 15q21.1, complete sequence Length = 161737 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 144 agaaggaaataataaagagaat 165 |||||||||||||||||||||| Sbjct: 131513 agaaggaaataataaagagaat 131492
>emb|BX822779.1|CNS0A64T Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB63ZG06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 732 Score = 44.1 bits (22), Expect = 0.34 Identities = 37/42 (88%) Strand = Plus / Minus Query: 354 gaacatccgccatggaacatctccaaccaacatccaatcacc 395 ||||||| ||| |||||||||||||||| |||||| ||||| Sbjct: 515 gaacatctcccaaggaacatctccaaccatcatccagtcacc 474
>gb|BT005874.1| Arabidopsis thaliana At2g33310 gene, complete cds Length = 744 Score = 44.1 bits (22), Expect = 0.34 Identities = 43/50 (86%) Strand = Plus / Minus Query: 353 tgaacatccgccatggaacatctccaaccaacatccaatcaccatcctta 402 ||||||| | |||||||||||| ||||| | ||||||||| || |||||| Sbjct: 640 tgaacattctccatggaacatcaccaacaagcatccaatctccttcctta 591
>gb|AY085194.1| Arabidopsis thaliana clone 13741 mRNA, complete sequence Length = 1263 Score = 44.1 bits (22), Expect = 0.34 Identities = 43/50 (86%) Strand = Plus / Minus Query: 353 tgaacatccgccatggaacatctccaaccaacatccaatcaccatcctta 402 ||||||| | |||||||||||| ||||| | ||||||||| || |||||| Sbjct: 878 tgaacattctccatggaacatcaccaacaagcatccaatctccttcctta 829
>dbj|AB026821.1| Cucumis sativus CsIAA1 mRNA for Aux/IAA protein, complete cds Length = 919 Score = 44.1 bits (22), Expect = 0.34 Identities = 40/46 (86%) Strand = Plus / Minus Query: 353 tgaacatccgccatggaacatctccaaccaacatccaatcaccatc 398 |||||||| ||| || ||||| ||||||||||||||||| ||||| Sbjct: 492 tgaacatcttccaaggcacatccccaaccaacatccaatctccatc 447
>gb|AC111084.12| Mus musculus chromosome 7, clone RP23-143J24, complete sequence Length = 205564 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 74 gtgtagtagatacacacacaca 95 |||||||||||||||||||||| Sbjct: 112128 gtgtagtagatacacacacaca 112149
>gb|U18415.1|ATU18415 Arabidopsis thaliana IAA13 (IAA13) gene, complete cds Length = 1262 Score = 44.1 bits (22), Expect = 0.34 Identities = 43/50 (86%) Strand = Plus / Minus Query: 353 tgaacatccgccatggaacatctccaaccaacatccaatcaccatcctta 402 ||||||| | |||||||||||| ||||| | ||||||||| || |||||| Sbjct: 853 tgaacattctccatggaacatcaccaacaagcatccaatctccttcctta 804
>gb|U18406.1|ATU18406 Arabidopsis thaliana IAA3 (IAA3) gene, complete cds Length = 1031 Score = 44.1 bits (22), Expect = 0.34 Identities = 40/46 (86%) Strand = Plus / Minus Query: 353 tgaacatccgccatggaacatctccaaccaacatccaatcaccatc 398 |||||||| |||||||||||| |||| | ||||||||||||||| Sbjct: 587 tgaacatctcccatggaacatcaccaatgagcatccaatcaccatc 542
>gb|AY669801.1| Arabidopsis thaliana clone C105339 IAA30 (At3g62100) mRNA, complete cds Length = 550 Score = 44.1 bits (22), Expect = 0.34 Identities = 37/42 (88%) Strand = Plus / Minus Query: 354 gaacatccgccatggaacatctccaaccaacatccaatcacc 395 ||||||| ||| |||||||||||||||| |||||| ||||| Sbjct: 471 gaacatctcccaaggaacatctccaaccatcatccagtcacc 430
>ref|NM_179697.2| Arabidopsis thaliana IAA8; transcription factor AT2G22670 (IAA8) transcript variant AT2G22670.2 mRNA, complete cds Length = 1344 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcacc 395 |||||||||||| ||||| | |||||||||||| Sbjct: 1034 ccatggaacatcgccaacaagcatccaatcacc 1002
>ref|NM_127832.2| Arabidopsis thaliana IAA8; transcription factor AT2G22670 (IAA8) transcript variant AT2G22670.1 mRNA, complete cds Length = 1418 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcacc 395 |||||||||||| ||||| | |||||||||||| Sbjct: 1086 ccatggaacatcgccaacaagcatccaatcacc 1054
>ref|XM_507049.1| PREDICTED Oryza sativa (japonica cultivar-group), P0643F09.36-2 mRNA Length = 1298 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 367 ggaacatctccaaccaacatccaatcaccatcc 399 |||||||||||||| | |||||| ||||||||| Sbjct: 841 ggaacatctccaacgagcatccagtcaccatcc 809
>ref|XM_468410.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1175 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 367 ggaacatctccaaccaacatccaatcaccatcc 399 |||||||||||||| | |||||| ||||||||| Sbjct: 802 ggaacatctccaacgagcatccagtcaccatcc 770
>ref|XM_468411.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1180 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 367 ggaacatctccaaccaacatccaatcaccatcc 399 |||||||||||||| | |||||| ||||||||| Sbjct: 807 ggaacatctccaacgagcatccagtcaccatcc 775
>gb|AC132608.2| Mus musculus BAC clone RP23-451E12 from chromosome 18, complete sequence Length = 201478 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 gaacacagatagatagaagga 150 ||||||||||||||||||||| Sbjct: 207 gaacacagatagatagaagga 227
>gb|BC011752.2| Homo sapiens methyl-CpG binding domain protein 4, mRNA (cDNA clone MGC:19710 IMAGE:3534047), complete cds Length = 2012 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 128 acgaacacagatagatagaaggaaa 152 ||||||||||||||| ||||||||| Sbjct: 1240 acgaacacagatagaaagaaggaaa 1264
>gb|AC139757.4| Mus musculus BAC clone RP23-440H11 from chromosome 18, complete sequence Length = 193847 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 gaacacagatagatagaagga 150 ||||||||||||||||||||| Sbjct: 27364 gaacacagatagatagaagga 27344
>gb|BC034463.1| Homo sapiens methyl-CpG binding domain protein 4, mRNA (cDNA clone IMAGE:5178680) Length = 2002 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 128 acgaacacagatagatagaaggaaa 152 ||||||||||||||| ||||||||| Sbjct: 1215 acgaacacagatagaaagaaggaaa 1239
>gb|AC087430.3| Homo sapiens chromosome 3 clone RP11-242C8 map 3p, complete sequence Length = 152289 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 141 gatagaaggaaataataaaga 161 ||||||||||||||||||||| Sbjct: 102384 gatagaaggaaataataaaga 102364
>gb|AF494057.1| Homo sapiens methyl-CpG binding domain protein 4 (MBD4) gene, complete cds Length = 12064 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 128 acgaacacagatagatagaaggaaa 152 ||||||||||||||| ||||||||| Sbjct: 7930 acgaacacagatagaaagaaggaaa 7954
>emb|AL607082.9| Human DNA sequence from clone RP11-166O7 on chromosome 10, complete sequence Length = 75633 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 gaaggaaataataaagagaat 165 ||||||||||||||||||||| Sbjct: 11783 gaaggaaataataaagagaat 11803
>emb|AL445674.12| Human DNA sequence from clone RP11-477L5 on chromosome 9, complete sequence Length = 91940 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 tagatagaaggaaataataaa 159 ||||||||||||||||||||| Sbjct: 70270 tagatagaaggaaataataaa 70290
>emb|AL359995.13| Human DNA sequence from clone RP13-209A14 on chromosome 10, complete sequence Length = 23336 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 144 agaaggaaataataaagagaa 164 ||||||||||||||||||||| Sbjct: 7018 agaaggaaataataaagagaa 6998
>emb|AL353688.7| Human DNA sequence from clone RP11-275O3 on chromosome 13, complete sequence Length = 92569 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 tgtagtagatacacacacaca 95 ||||||||||||||||||||| Sbjct: 34951 tgtagtagatacacacacaca 34931
>gb|AF532602.1| Homo sapiens methyl-CpG binding domain protein 4 variant mRNA, complete cds; alternatively spliced Length = 2105 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 128 acgaacacagatagatagaaggaaa 152 ||||||||||||||| ||||||||| Sbjct: 1389 acgaacacagatagaaagaaggaaa 1413
>gb|AF334714.1| Arabidopsis thaliana auxin-regulated protein IAA8 (At2g22670) mRNA, complete cds Length = 966 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcacc 395 |||||||||||| ||||| | |||||||||||| Sbjct: 858 ccatggaacatcgccaacaagcatccaatcacc 826
>gb|AY096452.1| Arabidopsis thaliana auxin-regulated protein IAA8 (At2g22670) mRNA, complete cds Length = 997 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcacc 395 |||||||||||| ||||| | |||||||||||| Sbjct: 858 ccatggaacatcgccaacaagcatccaatcacc 826
>gb|AY070399.1| Arabidopsis thaliana auxin-regulated protein IAA8 (At2g22670) mRNA, complete cds Length = 1315 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcacc 395 |||||||||||| ||||| | |||||||||||| Sbjct: 1034 ccatggaacatcgccaacaagcatccaatcacc 1002
>emb|CR450305.1| Homo sapiens full open reading frame cDNA clone RZPDo834E011D for gene MBD4, methyl-CpG binding domain protein 4; complete cds; without stopcodon Length = 1722 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 128 acgaacacagatagatagaaggaaa 152 ||||||||||||||| ||||||||| Sbjct: 1197 acgaacacagatagaaagaaggaaa 1221
>emb|AL138651.1|ATT17J13 Arabidopsis thaliana DNA chromosome 3, BAC clone T17J13 Length = 85217 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 367 ggaacatctccaaccaacatccaatcacc 395 |||||||||||||||| |||||| ||||| Sbjct: 24067 ggaacatctccaaccatcatccagtcacc 24039
>emb|AJ748648.1| Oryza sativa (indica cultivar-group) mRNA for indoleacetic acid-inducible protein homologue Length = 882 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 367 ggaacatctccaaccaacatccaatcaccatcc 399 |||||||||||||| | |||||| ||||||||| Sbjct: 708 ggaacatctccaacgagcatccagtcaccatcc 676
>emb|CR857219.1| Pongo pygmaeus mRNA; cDNA DKFZp469B1421 (from clone DKFZp469B1421) Length = 2481 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 128 acgaacacagatagatagaaggaaa 152 ||||||||||||||| ||||||||| Sbjct: 1391 acgaacacagatagaaagaaggaaa 1415
>gb|AC119741.3| Homo sapiens 3 BAC RP11-570O24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 191857 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 85 acacacacacatcaacttacacgatctaa 113 ||||||||||||||| |||||| |||||| Sbjct: 101820 acacacacacatcaaattacacaatctaa 101792
>emb|CR619777.1| full-length cDNA clone CS0DK006YH06 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 2017 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 128 acgaacacagatagatagaaggaaa 152 ||||||||||||||| ||||||||| Sbjct: 1300 acgaacacagatagaaagaaggaaa 1324
>gb|AY114671.1| Arabidopsis thaliana auxin-regulated protein IAA8 (At2g22670) mRNA, complete cds Length = 1113 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcacc 395 |||||||||||| ||||| | |||||||||||| Sbjct: 858 ccatggaacatcgccaacaagcatccaatcacc 826
>emb|CR592808.1| full-length cDNA clone CS0DI075YA12 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 768 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 128 acgaacacagatagatagaaggaaa 152 ||||||||||||||| ||||||||| Sbjct: 5 acgaacacagatagaaagaaggaaa 29
>ref|NM_003925.1| Homo sapiens methyl-CpG binding domain protein 4 (MBD4), mRNA Length = 2470 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 128 acgaacacagatagatagaaggaaa 152 ||||||||||||||| ||||||||| Sbjct: 1391 acgaacacagatagaaagaaggaaa 1415
>gb|AC006340.5| Arabidopsis thaliana chromosome 2 clone T9I22 map CIC06C07, complete sequence Length = 95375 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcacc 395 |||||||||||| ||||| | |||||||||||| Sbjct: 48687 ccatggaacatcgccaacaagcatccaatcacc 48655
>gb|AY059905.1| Arabidopsis thaliana auxin-regulated protein (IAA8) (At2g22670; T9I22.11) mRNA, complete cds Length = 1306 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcacc 395 |||||||||||| ||||| | |||||||||||| Sbjct: 1036 ccatggaacatcgccaacaagcatccaatcacc 1004
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 316 gaccccttcatgatcctcatcctcctgca 344 ||||||||||||||||||| |||| |||| Sbjct: 25360233 gaccccttcatgatcctcaacctcttgca 25360205
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 367 ggaacatctccaaccaacatccaatcaccatcc 399 |||||||||||||| | |||||| ||||||||| Sbjct: 35092668 ggaacatctccaacgagcatccagtcaccatcc 35092700
>gb|AC080007.26| Homo sapiens 3 BAC RP11-529F4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168551 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 128 acgaacacagatagatagaaggaaa 152 ||||||||||||||| ||||||||| Sbjct: 132675 acgaacacagatagaaagaaggaaa 132699
>emb|BX820735.1|CNS0A8N4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH64ZG09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1259 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcacc 395 |||||||||||| ||||| | |||||||||||| Sbjct: 993 ccatggaacatcgccaacaagcatccaatcacc 961
>emb|BX819665.1|CNS0A7WB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS13ZH01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1266 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcacc 395 |||||||||||| ||||| | |||||||||||| Sbjct: 975 ccatggaacatcgccaacaagcatccaatcacc 943
>emb|BX842325.1|CNS0A2VX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS2ZF05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1296 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcacc 395 |||||||||||| ||||| | |||||||||||| Sbjct: 1009 ccatggaacatcgccaacaagcatccaatcacc 977
>emb|BX841738.1|CNS09YIO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL62ZB10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1137 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 363 ccatggaacatctccaaccaacatccaatcacc 395 |||||||||||| ||||| | |||||||||||| Sbjct: 250 ccatggaacatcgccaacaagcatccaatcacc 282
>dbj|AP005111.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643F09 Length = 161001 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 367 ggaacatctccaaccaacatccaatcaccatcc 399 |||||||||||||| | |||||| ||||||||| Sbjct: 153009 ggaacatctccaacgagcatccagtcaccatcc 153041
>dbj|AP004028.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1136_C12 Length = 103973 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 367 ggaacatctccaaccaacatccaatcaccatcc 399 |||||||||||||| | |||||| ||||||||| Sbjct: 65831 ggaacatctccaacgagcatccagtcaccatcc 65863
>dbj|AK104802.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-C05, full insert sequence Length = 1175 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 367 ggaacatctccaaccaacatccaatcaccatcc 399 |||||||||||||| | |||||| ||||||||| Sbjct: 802 ggaacatctccaacgagcatccagtcaccatcc 770
>dbj|AK104501.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-E07, full insert sequence Length = 1180 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 367 ggaacatctccaaccaacatccaatcaccatcc 399 |||||||||||||| | |||||| ||||||||| Sbjct: 807 ggaacatctccaacgagcatccagtcaccatcc 775
>dbj|AK073361.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027E22, full insert sequence Length = 1165 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 316 gaccccttcatgatcctcatcctcctgca 344 ||||||||||||||||||| |||| |||| Sbjct: 685 gaccccttcatgatcctcaacctcttgca 657
>dbj|AK069892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039N11, full insert sequence Length = 1298 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 367 ggaacatctccaaccaacatccaatcaccatcc 399 |||||||||||||| | |||||| ||||||||| Sbjct: 841 ggaacatctccaacgagcatccagtcaccatcc 809
>gb|AF120999.1|SEG_HS4MBD3 Homo sapiens methyl-CpG binding protein 4 (MBD4) gene, exons 4a through 7 and complete cds Length = 3761 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 128 acgaacacagatagatagaaggaaa 152 ||||||||||||||| ||||||||| Sbjct: 588 acgaacacagatagaaagaaggaaa 612
>gb|AF114784.1|AF114784 Homo sapiens methyl-CpG binding endonuclease (MED1) mRNA, complete cds Length = 2152 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 128 acgaacacagatagatagaaggaaa 152 ||||||||||||||| ||||||||| Sbjct: 1356 acgaacacagatagaaagaaggaaa 1380
>dbj|AP003087.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-594014, complete sequences Length = 100403 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 tgtagtagatacacacacaca 95 ||||||||||||||||||||| Sbjct: 61261 tgtagtagatacacacacaca 61241
>gb|AF072250.1|AF072250 Homo sapiens methyl-CpG binding protein MBD4 (MBD4) mRNA, complete cds Length = 2470 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 128 acgaacacagatagatagaaggaaa 152 ||||||||||||||| ||||||||| Sbjct: 1391 acgaacacagatagaaagaaggaaa 1415
>gb|U18410.1|ATU18410 Arabidopsis thaliana IAA8 (IAA8) gene complete cds Length = 1310 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcacc 395 |||||||||||| ||||| | |||||||||||| Sbjct: 998 ccatggaacatcgccaacaagcatccaatcacc 966
>emb|AM180876.1| Homo sapiens mRNA for putative methyl-CpG binding protein (MBD4 gene), spice variant Length = 805 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 128 acgaacacagatagatagaaggaaa 152 ||||||||||||||| ||||||||| Sbjct: 261 acgaacacagatagaaagaaggaaa 285
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 316 gaccccttcatgatcctcatcctcctgca 344 ||||||||||||||||||| |||| |||| Sbjct: 25288409 gaccccttcatgatcctcaacctcttgca 25288381
>emb|AL837528.5|CNS08CAR Oryza sativa chromosome 12, . BAC OSJNBb0062H20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152914 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 316 gaccccttcatgatcctcatcctcctgca 344 ||||||||||||||||||| |||| |||| Sbjct: 27043 gaccccttcatgatcctcaacctcttgca 27015
>emb|AL449212.1|HS436B3 Homo sapiens chromosome 3 sequence from PAC RP3-436B3 map 3q21 region D3S3607-D3S1587, complete sequence Length = 67335 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 128 acgaacacagatagatagaaggaaa 152 ||||||||||||||| ||||||||| Sbjct: 54151 acgaacacagatagaaagaaggaaa 54127
>dbj|AP006130.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT36O13, TM0226, complete sequence Length = 140838 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 370 acatctccaaccaacatccaatcaccatc 398 ||||||||||||| |||||| |||||||| Sbjct: 57572 acatctccaaccagcatccagtcaccatc 57544
>gb|DQ252491.1| Solanum tuberosum clone 060E03 Aux/IAA protein-like mRNA, complete cds Length = 1590 Score = 42.1 bits (21), Expect = 1.4 Identities = 75/93 (80%) Strand = Plus / Minus Query: 310 gcatctgaccccttcatgatcctcatcctcctgcagctgtctgtgaacatccgccatgga 369 |||||||| || ||||||||||||| |||| |||| |||| | |||||| ||| || Sbjct: 1138 gcatctgaacctttcatgatcctcaacctcttgcaagtgtcaataaacatctcccaaggt 1079 Query: 370 acatctccaaccaacatccaatcaccatcctta 402 ||||| ||||| | |||||| || ||||||||| Sbjct: 1078 acatcaccaacaagcatccagtccccatcctta 1046
>gb|J03920.1|SOYAUX22 Soybean auxin-regulated protein (Aux22) mRNA, complete cds Length = 1945 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 370 acatctccaaccaacatccaatcaccatc 398 ||||||||||| | ||||||||||||||| Sbjct: 1348 acatctccaacaagcatccaatcaccatc 1320
>gb|AC153800.1| Mus musculus BAC RP23-128O3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 174134 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 acacacacacatcaacttac 104 |||||||||||||||||||| Sbjct: 122914 acacacacacatcaacttac 122895
>ref|NM_123736.2| Arabidopsis thaliana ATAUX2-11; transcription factor AT5G43700 (ATAUX2-11) mRNA, complete cds Length = 1168 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 367 ggaacatctccaaccaacatccaatcaccatc 398 |||||||| ||||| | ||||||||||||||| Sbjct: 708 ggaacatcaccaacaagcatccaatcaccatc 677
>ref|XM_469685.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1379 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 370 acatctccaaccaacatccaatcaccatcctt 401 ||||||||||| | |||||| ||||||||||| Sbjct: 757 acatctccaacaagcatccagtcaccatcctt 726
>gb|AC150517.3| Bos taurus BAC CH240-161G19 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 180767 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 atagaaggaaataataaaga 161 |||||||||||||||||||| Sbjct: 122422 atagaaggaaataataaaga 122441
>gb|AC138597.7| Mus musculus chromosome 1, clone RP24-340D21, complete sequence Length = 147164 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 tagatacacacacacatcaa 99 |||||||||||||||||||| Sbjct: 75914 tagatacacacacacatcaa 75933
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 370 acatctccaaccaacatccaatcaccatcctt 401 ||||||||||| | |||||| ||||||||||| Sbjct: 30188871 acatctccaacaagcatccagtcaccatcctt 30188902
>ref|XM_857527.1| PREDICTED: Canis familiaris similar to ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast), transcript variant 4 (LOC478495), mRNA Length = 2725 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 agaaggaaataataaagaga 163 |||||||||||||||||||| Sbjct: 127 agaaggaaataataaagaga 108
>ref|XM_845800.1| PREDICTED: Canis familiaris similar to ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast), transcript variant 3 (LOC478495), mRNA Length = 2675 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 agaaggaaataataaagaga 163 |||||||||||||||||||| Sbjct: 127 agaaggaaataataaagaga 108
>gb|AC096855.5| Oryza sativa chromosome 3 BAC OJ1365_D05 genomic sequence, complete sequence Length = 163972 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 370 acatctccaaccaacatccaatcaccatcctt 401 ||||||||||| | |||||| ||||||||||| Sbjct: 35024 acatctccaacaagcatccagtcaccatcctt 34993
>emb|AJ563599.2|OSA563599 Oryza sativa (indica cultivar-group) iaa1 gene for Aux/IAA protein, exons 1-5 Length = 4539 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 370 acatctccaaccaacatccaatcaccatcctt 401 ||||||||||| | |||||| ||||||||||| Sbjct: 3949 acatctccaacaagcatccagtcaccatcctt 3918
>gb|AC116581.4| Mus musculus BAC clone RP23-295E15 from 1, complete sequence Length = 156332 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 tagatacacacacacatcaa 99 |||||||||||||||||||| Sbjct: 105748 tagatacacacacacatcaa 105729
>emb|AM040278.1| Capsicum chinense mRNA for auxin induced protein (aux/iaa gene) Length = 1778 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 310 gcatctgaccccttcatgatcctcatcctcctgcag 345 |||||||| || ||||||||||||| |||| ||||| Sbjct: 1267 gcatctgaacctttcatgatcctcagcctcttgcag 1232
>emb|AL355878.14| Human DNA sequence from clone RP11-559K11 on chromosome 6 Contains a CpG island, complete sequence Length = 166718 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 gatagatagaaggaaataataaag 160 ||||||| |||||||||||||||| Sbjct: 158833 gatagatggaaggaaataataaag 158810
>emb|AL354828.12| Human DNA sequence from clone RP11-274P12 on chromosome 13 Contains a ferritin heavy polypeptide 1 (FTH1) pseudogene and a DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 39 (DDX39) (DDXL, MGC8471, MGC8203) pseudogene, complete sequence Length = 168114 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 tcctcctgcagctgtctgtg 354 |||||||||||||||||||| Sbjct: 73879 tcctcctgcagctgtctgtg 73860
>emb|AL122019.28|HSJ831A12 Human DNA sequence from clone RP5-831A12 on chromosome 1q24.1-25.3, complete sequence Length = 110539 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 141 gatagaaggaaataataaagagaataca 168 ||||||||||||||| || ||||||||| Sbjct: 56445 gatagaaggaaataaaaatgagaataca 56472
>gb|AY137961.1| Mirabilis jalapa clone SM-36 Aux/IAA1 mRNA, partial cds Length = 291 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatc 398 |||||||||||| ||||| | ||||||||| ||||| Sbjct: 192 ccatggaacatcaccaacaagcatccaatctccatc 157
>emb|AL121759.25|HSDJ872K7 Human DNA sequence from clone RP5-872K7 on chromosome 20 Contains two novel genes, the 5' end of the C20orf19 gene for hypothalamus protein HT013, the RPL24P2 gene for ribosomal protein L24 pseudogene 2, the RPS15AP1 gene for ribosomal protein S15a pseudogene 1 and three CpG islands, complete sequence Length = 157972 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 tagatagaaggaaataataa 158 |||||||||||||||||||| Sbjct: 153558 tagatagaaggaaataataa 153539
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 acacagatagatagaaggaaataa 155 |||||||| ||||||||||||||| Sbjct: 1115281 acacagatcgatagaaggaaataa 1115304
>gb|AY129669.1| Mirabilis jalapa auxin-responsive protein IAA1 mRNA, partial cds Length = 990 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatc 398 |||||||||||| ||||| | ||||||||| ||||| Sbjct: 483 ccatggaacatcaccaacaagcatccaatctccatc 448
>gb|AC092942.10| Homo sapiens 3 BAC RP11-479J2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 109907 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 138 atagatagaaggaaataataaaga 161 ||||| |||||||||||||||||| Sbjct: 26704 atagaaagaaggaaataataaaga 26681
>gb|AC122713.2| Homo sapiens chromosome 5 clone RP11-39H3, complete sequence Length = 149006 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 139 tagatagaaggaaataataaagag 162 ||||| |||||||||||||||||| Sbjct: 41070 tagatggaaggaaataataaagag 41047
>emb|BX321920.7| Zebrafish DNA sequence from clone DKEY-43F15 in linkage group 16, complete sequence Length = 92059 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 tagtgtagtagatacacacacaca 95 |||||||||| ||||||||||||| Sbjct: 73874 tagtgtagtatatacacacacaca 73851
>gb|AC002332.3| Arabidopsis thaliana chromosome 2 clone F4P9 map ve015, complete sequence Length = 152593 Score = 40.1 bits (20), Expect = 5.4 Identities = 35/40 (87%) Strand = Plus / Plus Query: 363 ccatggaacatctccaaccaacatccaatcaccatcctta 402 |||||||||||| ||||| | ||||||||| || |||||| Sbjct: 18715 ccatggaacatcaccaacaagcatccaatctccttcctta 18754
>gb|AC007923.7| Homo sapiens chromosome 17, clone RP11-805L22, complete sequence Length = 180270 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 atagaaggaaataataaaga 161 |||||||||||||||||||| Sbjct: 78486 atagaaggaaataataaaga 78467
>gb|AC154255.2| Mus musculus BAC clone RP24-202K20 from chromosome 13, complete sequence Length = 159755 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 gtgtagtagatacacacaca 93 |||||||||||||||||||| Sbjct: 15656 gtgtagtagatacacacaca 15637
>gb|AC010364.6| Homo sapiens chromosome 5 clone CTD-2042D5, complete sequence Length = 163400 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 atagaaggaaataataaaga 161 |||||||||||||||||||| Sbjct: 40052 atagaaggaaataataaaga 40033
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 370 acatctccaaccaacatccaatcaccatcctt 401 ||||||||||| | |||||| ||||||||||| Sbjct: 30280293 acatctccaacaagcatccagtcaccatcctt 30280324
>emb|BX820358.1|CNS0A9IV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH25ZG11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1328 Score = 40.1 bits (20), Expect = 5.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatcctta 402 |||||||||||| ||||| | ||||||||| || |||||| Sbjct: 958 ccatggaacatcaccaacaagcatccaatctccttcctta 919
>gb|AC010450.6|AC010450 Homo sapiens chromosome 5 clone CTD-2242D16, complete sequence Length = 108916 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 atagaaggaaataataaaga 161 |||||||||||||||||||| Sbjct: 103272 atagaaggaaataataaaga 103253
>gb|BT005853.1| Arabidopsis thaliana At5g43700 gene, complete cds Length = 561 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 367 ggaacatctccaaccaacatccaatcaccatc 398 |||||||| ||||| | ||||||||||||||| Sbjct: 476 ggaacatcaccaacaagcatccaatcaccatc 445
>gb|AC010207.18| Homo sapiens 3 BAC RP11-375I20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 184582 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 138 atagatagaaggaaataataaaga 161 ||||| |||||||||||||||||| Sbjct: 119492 atagaaagaaggaaataataaaga 119469
>gb|AY087635.1| Arabidopsis thaliana clone 37274 mRNA, complete sequence Length = 1403 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatc 398 |||||| ||||| ||||| | ||||||||||||||| Sbjct: 1087 ccatgggacatcgccaacaagcatccaatcaccatc 1052
>gb|AC122716.2| Homo sapiens chromosome 5 clone RP11-567A12, complete sequence Length = 171057 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 atagaaggaaataataaaga 161 |||||||||||||||||||| Sbjct: 137222 atagaaggaaataataaaga 137241
>gb|AC157326.2| Dasypus novemcinctus, clone Dasypus novemcinctus-10241875B19, complete sequence Length = 43078 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 138 atagatagaaggaaataataaaga 161 ||||| |||||||||||||||||| Sbjct: 8156 atagaaagaaggaaataataaaga 8133
>dbj|AB026651.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD19 Length = 87286 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 367 ggaacatctccaaccaacatccaatcaccatc 398 |||||||| ||||| | ||||||||||||||| Sbjct: 5923 ggaacatcaccaacaagcatccaatcaccatc 5892
>emb|X53435.1|ATAUX211 A.thaliana auxin-inducible gene Aux2-11 Length = 1776 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 367 ggaacatctccaaccaacatccaatcaccatc 398 |||||||| ||||| | ||||||||||||||| Sbjct: 1252 ggaacatcaccaacaagcatccaatcaccatc 1221
>dbj|AK106192.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-E03, full insert sequence Length = 1249 Score = 40.1 bits (20), Expect = 5.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 289 gccctcggagcaaggcccactgcatctgaccccttcatgatcct 332 ||||| |||||||| || | ||||||||| || ||||||||||| Sbjct: 851 gcccttggagcaagtccaattgcatctgaacctttcatgatcct 808
>dbj|AK105936.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-B07, full insert sequence Length = 1240 Score = 40.1 bits (20), Expect = 5.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 289 gccctcggagcaaggcccactgcatctgaccccttcatgatcct 332 ||||| |||||||| || | ||||||||| || ||||||||||| Sbjct: 842 gcccttggagcaagtccaattgcatctgaacctttcatgatcct 799
>dbj|AK102762.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107D08, full insert sequence Length = 1150 Score = 40.1 bits (20), Expect = 5.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 289 gccctcggagcaaggcccactgcatctgaccccttcatgatcct 332 ||||| |||||||| || | ||||||||| || ||||||||||| Sbjct: 822 gcccttggagcaagtccaattgcatctgaacctttcatgatcct 779
>dbj|AK069902.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034K17, full insert sequence Length = 1306 Score = 40.1 bits (20), Expect = 5.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 289 gccctcggagcaaggcccactgcatctgaccccttcatgatcct 332 ||||| |||||||| || | ||||||||| || ||||||||||| Sbjct: 908 gcccttggagcaagtccaattgcatctgaacctttcatgatcct 865
>emb|CT025569.14| Mouse DNA sequence from clone RP24-68J22 on chromosome 13, complete sequence Length = 230723 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 gtgtagtagatacacacaca 93 |||||||||||||||||||| Sbjct: 91911 gtgtagtagatacacacaca 91930
>gb|AC000104.1|F19P19 Sequence of BAC F19P19 from Arabidopsis thaliana chromosome 1, complete sequence Length = 107527 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatc 398 |||||||||||| |||| | ||||||||||||||| Sbjct: 104458 ccatggaacatcaccaatgagcatccaatcaccatc 104423
>gb|AC006406.1|AC006406 Homo sapiens, clone hRPK.25_A_1, complete sequence Length = 159115 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 atagaaggaaataataaaga 161 |||||||||||||||||||| Sbjct: 122780 atagaaggaaataataaaga 122799
>dbj|AP006633.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT12L11, TM0071, complete sequence Length = 69786 Score = 40.1 bits (20), Expect = 5.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatcctta 402 |||||| |||||||| || | |||||| |||||||||||| Sbjct: 23074 ccatgggacatctcccacgagcatccagtcaccatcctta 23035
>dbj|D14412.1|VIRAUX22A Vigna radiata auxin-regulated mRNA Length = 838 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 363 ccatggaacatctccaaccaacatccaatcaccatc 398 |||||| ||||||||||| | |||||| |||||||| Sbjct: 532 ccatggcacatctccaacaagcatccagtcaccatc 497
>gb|L15450.1|ATHIAA4A Arabidopsis thaliana auxin-responsive protein (IAA4) mRNA, 5' partial cds Length = 558 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 367 ggaacatctccaaccaacatccaatcaccatc 398 |||||||| ||||| | ||||||||||||||| Sbjct: 476 ggaacatcaccaacaagcatccaatcaccatc 445
>dbj|AB004931.1| Vigna radiata mRNA for Aux22c, complete cds Length = 899 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 367 ggaacatctccaaccaacatccaatcaccatc 398 |||||||||||||||| |||||| || ||||| Sbjct: 462 ggaacatctccaaccagcatccagtcgccatc 431 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,833,690 Number of Sequences: 3902068 Number of extensions: 14833690 Number of successful extensions: 151463 Number of sequences better than 10.0: 189 Number of HSP's better than 10.0 without gapping: 189 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 151049 Number of HSP's gapped (non-prelim): 414 length of query: 402 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 380 effective length of database: 17,147,199,772 effective search space: 6515935913360 effective search space used: 6515935913360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
