ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet32a07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY108343.1| Zea mays PCO065510 mRNA sequence Length = 1496 Score = 147 bits (74), Expect = 3e-32 Identities = 98/106 (92%) Strand = Plus / Plus Query: 317 aggcgtccatgcgcgccgggtactggtcgatgcagtccagccaggggctcctggacgggc 376 ||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| Sbjct: 369 aggcgtccatgcgcgccgggtactggtcgatgcagtccagccaggggctgcgcgcggggc 428 Query: 377 ggcgcacgcgtccgacggcgcgccacacggcgctgttgcacttgaa 422 |||||||||| | ||||||||||||||| ||||||||||||||||| Sbjct: 429 ggcgcacgcggcggacggcgcgccacaccgcgctgttgcacttgaa 474
>ref|XM_470547.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1788 Score = 139 bits (70), Expect = 8e-30 Identities = 103/114 (90%) Strand = Plus / Minus Query: 319 gcgtccatgcgcgccgggtactggtcgatgcagtccagccaggggctcctggacgggcgg 378 |||| |||||| ||||||||||| |||| |||||||||||| ||||| | | ||||||| Sbjct: 1784 gcgttcatgcgagccgggtactgctcgacgcagtccagccacgggctgcgcgccgggcgg 1725 Query: 379 cgcacgcgtccgacggcgcgccacacggcgctgttgcacttgaacccggagccg 432 |||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1724 cgcacgcggcggacggcgcgccacacggcgctgttgcacttgaacccggagccg 1671
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 139 bits (70), Expect = 8e-30 Identities = 103/114 (90%) Strand = Plus / Minus Query: 319 gcgtccatgcgcgccgggtactggtcgatgcagtccagccaggggctcctggacgggcgg 378 |||| |||||| ||||||||||| |||| |||||||||||| ||||| | | ||||||| Sbjct: 4253220 gcgttcatgcgagccgggtactgctcgacgcagtccagccacgggctgcgcgccgggcgg 4253161 Query: 379 cgcacgcgtccgacggcgcgccacacggcgctgttgcacttgaacccggagccg 432 |||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4253160 cgcacgcggcggacggcgcgccacacggcgctgttgcacttgaacccggagccg 4253107 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 394 gcgcgccacacggcgctgttgcacttgaacccggagccg 432 |||||||| || |||||||||||||||||||| |||||| Sbjct: 7656819 gcgcgccagaccgcgctgttgcacttgaaccccgagccg 7656857 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 403 acggcgctgttgcacttgaacccggagccg 432 |||||||||||||||||||| ||||||||| Sbjct: 3388428 acggcgctgttgcacttgaatccggagccg 3388399 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 acggcgctgttgcacttgaa 422 |||||||||||||||||||| Sbjct: 6271478 acggcgctgttgcacttgaa 6271497
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 139 bits (70), Expect = 8e-30 Identities = 103/114 (90%) Strand = Plus / Minus Query: 319 gcgtccatgcgcgccgggtactggtcgatgcagtccagccaggggctcctggacgggcgg 378 |||| |||||| ||||||||||| |||| |||||||||||| ||||| | | ||||||| Sbjct: 4253335 gcgttcatgcgagccgggtactgctcgacgcagtccagccacgggctgcgcgccgggcgg 4253276 Query: 379 cgcacgcgtccgacggcgcgccacacggcgctgttgcacttgaacccggagccg 432 |||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4253275 cgcacgcggcggacggcgcgccacacggcgctgttgcacttgaacccggagccg 4253222 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 394 gcgcgccacacggcgctgttgcacttgaacccggagccg 432 |||||||| || |||||||||||||||||||| |||||| Sbjct: 7654654 gcgcgccagaccgcgctgttgcacttgaaccccgagccg 7654692 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 403 acggcgctgttgcacttgaacccggagccg 432 |||||||||||||||||||| ||||||||| Sbjct: 3388539 acggcgctgttgcacttgaatccggagccg 3388510 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 acggcgctgttgcacttgaa 422 |||||||||||||||||||| Sbjct: 6270691 acggcgctgttgcacttgaa 6270710
>dbj|AK119228.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-A08, full insert sequence Length = 1912 Score = 139 bits (70), Expect = 8e-30 Identities = 103/114 (90%) Strand = Plus / Minus Query: 319 gcgtccatgcgcgccgggtactggtcgatgcagtccagccaggggctcctggacgggcgg 378 |||| |||||| ||||||||||| |||| |||||||||||| ||||| | | ||||||| Sbjct: 1679 gcgttcatgcgagccgggtactgctcgacgcagtccagccacgggctgcgcgccgggcgg 1620 Query: 379 cgcacgcgtccgacggcgcgccacacggcgctgttgcacttgaacccggagccg 432 |||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1619 cgcacgcggcggacggcgcgccacacggcgctgttgcacttgaacccggagccg 1566
>dbj|AK100798.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121F20, full insert sequence Length = 662 Score = 139 bits (70), Expect = 8e-30 Identities = 103/114 (90%) Strand = Plus / Minus Query: 319 gcgtccatgcgcgccgggtactggtcgatgcagtccagccaggggctcctggacgggcgg 378 |||| |||||| ||||||||||| |||| |||||||||||| ||||| | | ||||||| Sbjct: 429 gcgttcatgcgagccgggtactgctcgacgcagtccagccacgggctgcgcgccgggcgg 370 Query: 379 cgcacgcgtccgacggcgcgccacacggcgctgttgcacttgaacccggagccg 432 |||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 369 cgcacgcggcggacggcgcgccacacggcgctgttgcacttgaacccggagccg 316
>dbj|AK099232.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094M20, full insert sequence Length = 1903 Score = 139 bits (70), Expect = 8e-30 Identities = 103/114 (90%) Strand = Plus / Minus Query: 319 gcgtccatgcgcgccgggtactggtcgatgcagtccagccaggggctcctggacgggcgg 378 |||| |||||| ||||||||||| |||| |||||||||||| ||||| | | ||||||| Sbjct: 1670 gcgttcatgcgagccgggtactgctcgacgcagtccagccacgggctgcgcgccgggcgg 1611 Query: 379 cgcacgcgtccgacggcgcgccacacggcgctgttgcacttgaacccggagccg 432 |||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1610 cgcacgcggcggacggcgcgccacacggcgctgttgcacttgaacccggagccg 1557
>dbj|AK061335.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-B10, full insert sequence Length = 1909 Score = 139 bits (70), Expect = 8e-30 Identities = 103/114 (90%) Strand = Plus / Minus Query: 319 gcgtccatgcgcgccgggtactggtcgatgcagtccagccaggggctcctggacgggcgg 378 |||| |||||| ||||||||||| |||| |||||||||||| ||||| | | ||||||| Sbjct: 1679 gcgttcatgcgagccgggtactgctcgacgcagtccagccacgggctgcgcgccgggcgg 1620 Query: 379 cgcacgcgtccgacggcgcgccacacggcgctgttgcacttgaacccggagccg 432 |||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1619 cgcacgcggcggacggcgcgccacacggcgctgttgcacttgaacccggagccg 1566
>dbj|AK060840.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D04, full insert sequence Length = 1907 Score = 139 bits (70), Expect = 8e-30 Identities = 103/114 (90%) Strand = Plus / Minus Query: 319 gcgtccatgcgcgccgggtactggtcgatgcagtccagccaggggctcctggacgggcgg 378 |||| |||||| ||||||||||| |||| |||||||||||| ||||| | | ||||||| Sbjct: 1674 gcgttcatgcgagccgggtactgctcgacgcagtccagccacgggctgcgcgccgggcgg 1615 Query: 379 cgcacgcgtccgacggcgcgccacacggcgctgttgcacttgaacccggagccg 432 |||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1614 cgcacgcggcggacggcgcgccacacggcgctgttgcacttgaacccggagccg 1561
>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0076N15, complete sequence Length = 134307 Score = 139 bits (70), Expect = 8e-30 Identities = 103/114 (90%) Strand = Plus / Minus Query: 319 gcgtccatgcgcgccgggtactggtcgatgcagtccagccaggggctcctggacgggcgg 378 |||| |||||| ||||||||||| |||| |||||||||||| ||||| | | ||||||| Sbjct: 81835 gcgttcatgcgagccgggtactgctcgacgcagtccagccacgggctgcgcgccgggcgg 81776 Query: 379 cgcacgcgtccgacggcgcgccacacggcgctgttgcacttgaacccggagccg 432 |||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81775 cgcacgcggcggacggcgcgccacacggcgctgttgcacttgaacccggagccg 81722
>emb|AL607006.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence Length = 141787 Score = 73.8 bits (37), Expect = 4e-10 Identities = 37/37 (100%) Strand = Plus / Plus Query: 390 gacggcgcgccacacggcgctgttgcacttgaacccg 426 ||||||||||||||||||||||||||||||||||||| Sbjct: 124976 gacggcgcgccacacggcgctgttgcacttgaacccg 125012
>emb|AL731613.5|OSJN00257 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence Length = 133967 Score = 73.8 bits (37), Expect = 4e-10 Identities = 37/37 (100%) Strand = Plus / Plus Query: 390 gacggcgcgccacacggcgctgttgcacttgaacccg 426 ||||||||||||||||||||||||||||||||||||| Sbjct: 41534 gacggcgcgccacacggcgctgttgcacttgaacccg 41570
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 73.8 bits (37), Expect = 4e-10 Identities = 37/37 (100%) Strand = Plus / Plus Query: 390 gacggcgcgccacacggcgctgttgcacttgaacccg 426 ||||||||||||||||||||||||||||||||||||| Sbjct: 27390380 gacggcgcgccacacggcgctgttgcacttgaacccg 27390416
>ref|NM_189710.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1350 Score = 69.9 bits (35), Expect = 6e-09 Identities = 35/35 (100%) Strand = Plus / Plus Query: 392 cggcgcgccacacggcgctgttgcacttgaacccg 426 ||||||||||||||||||||||||||||||||||| Sbjct: 657 cggcgcgccacacggcgctgttgcacttgaacccg 691
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 69.9 bits (35), Expect = 6e-09 Identities = 35/35 (100%) Strand = Plus / Plus Query: 392 cggcgcgccacacggcgctgttgcacttgaacccg 426 ||||||||||||||||||||||||||||||||||| Sbjct: 41345815 cggcgcgccacacggcgctgttgcacttgaacccg 41345849 Score = 46.1 bits (23), Expect = 0.094 Identities = 35/39 (89%) Strand = Plus / Minus Query: 394 gcgcgccacacggcgctgttgcacttgaacccggagccg 432 |||||||| |||| ||||||||||||||| || |||||| Sbjct: 19951176 gcgcgccagacggtgctgttgcacttgaagcctgagccg 19951138
>dbj|AP004031.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0432C03 Length = 164394 Score = 69.9 bits (35), Expect = 6e-09 Identities = 35/35 (100%) Strand = Plus / Plus Query: 392 cggcgcgccacacggcgctgttgcacttgaacccg 426 ||||||||||||||||||||||||||||||||||| Sbjct: 37308 cggcgcgccacacggcgctgttgcacttgaacccg 37342
>ref|NM_196495.1| Oryza sativa (japonica cultivar-group) putative beta-ketoacyl-CoA synthase (OSJNBa0032I20.8), mRNA Length = 1572 Score = 67.9 bits (34), Expect = 3e-08 Identities = 34/34 (100%) Strand = Plus / Minus Query: 399 ccacacggcgctgttgcacttgaacccggagccg 432 |||||||||||||||||||||||||||||||||| Sbjct: 1437 ccacacggcgctgttgcacttgaacccggagccg 1404
>gb|AC146334.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone B1356F10, complete sequence Length = 170681 Score = 67.9 bits (34), Expect = 3e-08 Identities = 34/34 (100%) Strand = Plus / Plus Query: 399 ccacacggcgctgttgcacttgaacccggagccg 432 |||||||||||||||||||||||||||||||||| Sbjct: 138186 ccacacggcgctgttgcacttgaacccggagccg 138219
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 67.9 bits (34), Expect = 3e-08 Identities = 34/34 (100%) Strand = Plus / Plus Query: 399 ccacacggcgctgttgcacttgaacccggagccg 432 |||||||||||||||||||||||||||||||||| Sbjct: 21614667 ccacacggcgctgttgcacttgaacccggagccg 21614700 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 403 acggcgctgttgcacttgaacccg 426 |||||||||||||||||||||||| Sbjct: 23418015 acggcgctgttgcacttgaacccg 23417992
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 67.9 bits (34), Expect = 3e-08 Identities = 34/34 (100%) Strand = Plus / Plus Query: 399 ccacacggcgctgttgcacttgaacccggagccg 432 |||||||||||||||||||||||||||||||||| Sbjct: 14046782 ccacacggcgctgttgcacttgaacccggagccg 14046815 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 394 gcgcgccacacggcgctgttgcacttgaacccggagccg 432 |||||||| |||||||||||||||||||| ||||||||| Sbjct: 3638999 gcgcgccagacggcgctgttgcacttgaagccggagccg 3639037 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 394 gcgcgccacacggcgctgttgcacttgaacccggagccg 432 |||||||| |||||||||||||||||||| || |||||| Sbjct: 11266867 gcgcgccagacggcgctgttgcacttgaagcctgagccg 11266905
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence Length = 144651 Score = 67.9 bits (34), Expect = 3e-08 Identities = 34/34 (100%) Strand = Plus / Plus Query: 399 ccacacggcgctgttgcacttgaacccggagccg 432 |||||||||||||||||||||||||||||||||| Sbjct: 62911 ccacacggcgctgttgcacttgaacccggagccg 62944
>dbj|AK120567.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134A09, full insert sequence Length = 1536 Score = 67.9 bits (34), Expect = 3e-08 Identities = 34/34 (100%) Strand = Plus / Minus Query: 399 ccacacggcgctgttgcacttgaacccggagccg 432 |||||||||||||||||||||||||||||||||| Sbjct: 1182 ccacacggcgctgttgcacttgaacccggagccg 1149
>dbj|AK073016.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149L14, full insert sequence Length = 1040 Score = 67.9 bits (34), Expect = 3e-08 Identities = 34/34 (100%) Strand = Plus / Minus Query: 399 ccacacggcgctgttgcacttgaacccggagccg 432 |||||||||||||||||||||||||||||||||| Sbjct: 709 ccacacggcgctgttgcacttgaacccggagccg 676
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 67.9 bits (34), Expect = 3e-08 Identities = 34/34 (100%) Strand = Plus / Plus Query: 399 ccacacggcgctgttgcacttgaacccggagccg 432 |||||||||||||||||||||||||||||||||| Sbjct: 14055024 ccacacggcgctgttgcacttgaacccggagccg 14055057 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 394 gcgcgccacacggcgctgttgcacttgaacccggagccg 432 |||||||| |||||||||||||||||||| ||||||||| Sbjct: 3638920 gcgcgccagacggcgctgttgcacttgaagccggagccg 3638958 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 394 gcgcgccacacggcgctgttgcacttgaacccggagccg 432 |||||||| |||||||||||||||||||| || |||||| Sbjct: 11273307 gcgcgccagacggcgctgttgcacttgaagcctgagccg 11273345
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 67.9 bits (34), Expect = 3e-08 Identities = 34/34 (100%) Strand = Plus / Plus Query: 399 ccacacggcgctgttgcacttgaacccggagccg 432 |||||||||||||||||||||||||||||||||| Sbjct: 21924866 ccacacggcgctgttgcacttgaacccggagccg 21924899 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 403 acggcgctgttgcacttgaacccg 426 |||||||||||||||||||||||| Sbjct: 23727925 acggcgctgttgcacttgaacccg 23727902
>ref|NM_194947.1| Oryza sativa (japonica cultivar-group) putative senescence-associated protein 15 (OSJNBa0036D19.6), mRNA Length = 1797 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 394 gcgcgccacacggcgctgttgcacttgaacccggagccg 432 |||||||| |||||||||||||||||||| ||||||||| Sbjct: 1481 gcgcgccagacggcgctgttgcacttgaagccggagccg 1443
>gb|AC087723.3| Oryza sativa chromosome 10 clone OSJNBa0036D19, complete sequence Length = 144359 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 394 gcgcgccacacggcgctgttgcacttgaacccggagccg 432 |||||||| |||||||||||||||||||| ||||||||| Sbjct: 71840 gcgcgccagacggcgctgttgcacttgaagccggagccg 71878
>ref|XM_475915.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1563 Score = 60.0 bits (30), Expect = 6e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 399 ccacacggcgctgttgcacttgaacccggagccg 432 |||||||||||||||||||||||| ||||||||| Sbjct: 1455 ccacacggcgctgttgcacttgaagccggagccg 1422
>gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1268_B08, complete sequence Length = 119500 Score = 60.0 bits (30), Expect = 6e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 399 ccacacggcgctgttgcacttgaacccggagccg 432 |||||||||||||||||||||||| ||||||||| Sbjct: 40141 ccacacggcgctgttgcacttgaagccggagccg 40174
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 60.0 bits (30), Expect = 6e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 399 ccacacggcgctgttgcacttgaacccggagccg 432 |||||||||||||||||||||||| ||||||||| Sbjct: 28405217 ccacacggcgctgttgcacttgaagccggagccg 28405250 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 398 gccacacggcgctgttgcacttgaacccg 426 |||| |||||||||||||||||||||||| Sbjct: 28059210 gccagacggcgctgttgcacttgaacccg 28059238
>dbj|AK070754.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067B12, full insert sequence Length = 2233 Score = 60.0 bits (30), Expect = 6e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 399 ccacacggcgctgttgcacttgaacccggagccg 432 |||||||||||||||||||||||| ||||||||| Sbjct: 1914 ccacacggcgctgttgcacttgaagccggagccg 1881
>gb|AY105739.1| Zea mays PCO084555 mRNA sequence Length = 962 Score = 58.0 bits (29), Expect = 2e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 398 gccacacggcgctgttgcacttgaacccg 426 ||||||||||||||||||||||||||||| Sbjct: 409 gccacacggcgctgttgcacttgaacccg 381
>gb|AF114171.1| Sorghum bicolor BAC clone 25.M18, complete sequence Length = 183990 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 394 gcgcgccacacggcgctgttgcacttgaaccc 425 ||||||||||| |||||||||||||||||||| Sbjct: 5414 gcgcgccacacagcgctgttgcacttgaaccc 5383
>gb|AF527808.1| Sorghum bicolor clone BAC SBTXS_0040L6 php200725 orthologous region Length = 90923 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 394 gcgcgccacacggcgctgttgcacttgaaccc 425 ||||||||||| |||||||||||||||||||| Sbjct: 10233 gcgcgccacacagcgctgttgcacttgaaccc 10264
>ref|NM_196127.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OJ1341F06.20), mRNA Length = 609 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 394 gcgcgccacacggcgctgttgcacttgaacccggagccg 432 |||||||| |||||||||||||||||||| || |||||| Sbjct: 52 gcgcgccagacggcgctgttgcacttgaagcctgagccg 90
>gb|AC134516.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJA1208D02, complete sequence Length = 131922 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 394 gcgcgccacacggcgctgttgcacttgaacccggagccg 432 |||||||| |||||||||||||||||||| || |||||| Sbjct: 74855 gcgcgccagacggcgctgttgcacttgaagcctgagccg 74893
>gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0096L14, from chromosome 3, complete sequence Length = 131142 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 394 gcgcgccacacggcgctgttgcacttgaacccggagccg 432 |||||||| || |||||||||||||||||||| |||||| Sbjct: 58471 gcgcgccagaccgcgctgttgcacttgaaccccgagccg 58433
>gb|AC116926.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1341F06, from chromosome 10, complete sequence Length = 102520 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 394 gcgcgccacacggcgctgttgcacttgaacccggagccg 432 |||||||| |||||||||||||||||||| || |||||| Sbjct: 99588 gcgcgccagacggcgctgttgcacttgaagcctgagccg 99550
>dbj|AK119222.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E03, full insert sequence Length = 2098 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 394 gcgcgccacacggcgctgttgcacttgaacccggagccg 432 |||||||| || |||||||||||||||||||| |||||| Sbjct: 1621 gcgcgccagaccgcgctgttgcacttgaaccccgagccg 1583
>dbj|AK112059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-A11, full insert sequence Length = 2025 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 394 gcgcgccacacggcgctgttgcacttgaacccggagccg 432 |||||||| || |||||||||||||||||||| |||||| Sbjct: 1621 gcgcgccagaccgcgctgttgcacttgaaccccgagccg 1583
>ref|XM_467628.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1458 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 399 ccacacggcgctgttgcacttgaacccggagccg 432 |||| ||||||||||||||||||| ||||||||| Sbjct: 1365 ccacgcggcgctgttgcacttgaagccggagccg 1332
>ref|XM_464563.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1929 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 399 ccacacggcgctgttgcacttgaacccgga 428 |||||| ||||||||||||||||||||||| Sbjct: 1557 ccacaccgcgctgttgcacttgaacccgga 1528
>ref|NM_187760.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1575 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 403 acggcgctgttgcacttgaacccggagccg 432 |||||||||||||||||||| ||||||||| Sbjct: 1394 acggcgctgttgcacttgaatccggagccg 1365
>gb|AC105729.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1607A12, complete sequence Length = 177327 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 403 acggcgctgttgcacttgaacccggagccg 432 |||||||||||||||||||| ||||||||| Sbjct: 40786 acggcgctgttgcacttgaatccggagccg 40815
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 399 ccacacggcgctgttgcacttgaacccggagccg 432 |||| ||||||||||||||||||| ||||||||| Sbjct: 8419680 ccacgcggcgctgttgcacttgaagccggagccg 8419713 Score = 46.1 bits (23), Expect = 0.094 Identities = 26/27 (96%) Strand = Plus / Plus Query: 406 gcgctgttgcacttgaacccggagccg 432 ||||||||||||||||| ||||||||| Sbjct: 8609262 gcgctgttgcacttgaaaccggagccg 8609288 Score = 46.1 bits (23), Expect = 0.094 Identities = 26/27 (96%) Strand = Plus / Minus Query: 406 gcgctgttgcacttgaacccggagccg 432 ||||||||||||||||| ||||||||| Sbjct: 8523506 gcgctgttgcacttgaaaccggagccg 8523480 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 gcgctgttgcacttgaaccc 425 |||||||||||||||||||| Sbjct: 8656214 gcgctgttgcacttgaaccc 8656233
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 399 ccacacggcgctgttgcacttgaacccggagccg 432 |||| ||||||||||||||||||| ||||||||| Sbjct: 30520197 ccacgcggcgctgttgcacttgaagccggagccg 30520164 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 399 ccacacggcgctgttgcacttgaacccgga 428 |||||| ||||||||||||||||||||||| Sbjct: 5930670 ccacaccgcgctgttgcacttgaacccgga 5930699
>dbj|AP004740.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0092H22 Length = 165194 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 399 ccacacggcgctgttgcacttgaacccggagccg 432 |||| ||||||||||||||||||| ||||||||| Sbjct: 34381 ccacgcggcgctgttgcacttgaagccggagccg 34414 Score = 46.1 bits (23), Expect = 0.094 Identities = 26/27 (96%) Strand = Plus / Minus Query: 406 gcgctgttgcacttgaacccggagccg 432 ||||||||||||||||| ||||||||| Sbjct: 138207 gcgctgttgcacttgaaaccggagccg 138181
>dbj|AP005915.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0056C19 Length = 147739 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 399 ccacacggcgctgttgcacttgaacccgga 428 |||||| ||||||||||||||||||||||| Sbjct: 108891 ccacaccgcgctgttgcacttgaacccgga 108920
>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643A10 Length = 187931 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 399 ccacacggcgctgttgcacttgaacccggagccg 432 |||| ||||||||||||||||||| ||||||||| Sbjct: 32205 ccacgcggcgctgttgcacttgaagccggagccg 32172
>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544H11 Length = 178376 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 399 ccacacggcgctgttgcacttgaacccgga 428 |||||| ||||||||||||||||||||||| Sbjct: 160472 ccacaccgcgctgttgcacttgaacccgga 160501
>dbj|AP004888.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0617A09 Length = 134804 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 399 ccacacggcgctgttgcacttgaacccggagccg 432 |||| ||||||||||||||||||| ||||||||| Sbjct: 126245 ccacgcggcgctgttgcacttgaagccggagccg 126212
>dbj|AK067907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013127I02, full insert sequence Length = 1929 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 399 ccacacggcgctgttgcacttgaacccgga 428 |||||| ||||||||||||||||||||||| Sbjct: 1557 ccacaccgcgctgttgcacttgaacccgga 1528
>dbj|AK064127.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-E01, full insert sequence Length = 1408 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 403 acggcgctgttgcacttgaacccggagccg 432 |||||||||||||||||||| ||||||||| Sbjct: 962 acggcgctgttgcacttgaatccggagccg 933
>gb|AY110123.1| Zea mays CL29782_1 mRNA sequence Length = 932 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 403 acggcgctgttgcacttgaacccggagccg 432 |||||||||||||||||||| ||||||||| Sbjct: 264 acggcgctgttgcacttgaagccggagccg 293
>gb|AY108989.1| Zea mays PCO108745 mRNA sequence Length = 625 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 403 acggcgctgttgcacttgaacccggagccg 432 |||||||||||||||||||| ||||||||| Sbjct: 404 acggcgctgttgcacttgaagccggagccg 433
>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11, complete sequence Length = 204649 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 398 gccacacggcgctgttgcacttgaacccg 426 |||| |||||||||||||||||||||||| Sbjct: 139375 gccagacggcgctgttgcacttgaacccg 139403
>dbj|AK119596.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-D11, full insert sequence Length = 2378 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 398 gccacacggcgctgttgcacttgaacccg 426 |||| |||||||||||||||||||||||| Sbjct: 1700 gccagacggcgctgttgcacttgaacccg 1672
>dbj|AK101103.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025C07, full insert sequence Length = 2356 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 398 gccacacggcgctgttgcacttgaacccg 426 |||| |||||||||||||||||||||||| Sbjct: 1701 gccagacggcgctgttgcacttgaacccg 1673
>gb|AC146766.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone B1112E06, complete sequence Length = 177488 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 403 acggcgctgttgcacttgaacccg 426 |||||||||||||||||||||||| Sbjct: 8675 acggcgctgttgcacttgaacccg 8652
>gb|AC104845.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0091E08, complete sequence Length = 119526 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 403 acggcgctgttgcacttgaacccg 426 |||||||||||||||||||||||| Sbjct: 33528 acggcgctgttgcacttgaacccg 33505
>dbj|AP004361.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0062A24 Length = 148362 Score = 46.1 bits (23), Expect = 0.094 Identities = 35/39 (89%) Strand = Plus / Minus Query: 394 gcgcgccacacggcgctgttgcacttgaacccggagccg 432 |||||||| |||| ||||||||||||||| || |||||| Sbjct: 54085 gcgcgccagacggtgctgttgcacttgaagcctgagccg 54047
>dbj|AP004993.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0037N01 Length = 174085 Score = 46.1 bits (23), Expect = 0.094 Identities = 26/27 (96%) Strand = Plus / Plus Query: 406 gcgctgttgcacttgaacccggagccg 432 ||||||||||||||||| ||||||||| Sbjct: 24244 gcgctgttgcacttgaaaccggagccg 24270 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 gcgctgttgcacttgaaccc 425 |||||||||||||||||||| Sbjct: 71196 gcgctgttgcacttgaaccc 71215
>dbj|AP004630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0031A09 Length = 162511 Score = 46.1 bits (23), Expect = 0.094 Identities = 26/27 (96%) Strand = Plus / Plus Query: 406 gcgctgttgcacttgaacccggagccg 432 ||||||||||||||||| ||||||||| Sbjct: 84081 gcgctgttgcacttgaaaccggagccg 84107 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 gcgctgttgcacttgaaccc 425 |||||||||||||||||||| Sbjct: 131033 gcgctgttgcacttgaaccc 131052
>dbj|AK068185.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135C17, full insert sequence Length = 1669 Score = 46.1 bits (23), Expect = 0.094 Identities = 26/27 (96%) Strand = Plus / Minus Query: 406 gcgctgttgcacttgaacccggagccg 432 ||||||||||||||||| ||||||||| Sbjct: 1469 gcgctgttgcacttgaaaccggagccg 1443
>gb|AY308831.1| Marchantia polymorpha FAE1 gene, complete cds Length = 2446 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 gcgctgttgcacttgaacccg 426 ||||||||||||||||||||| Sbjct: 1637 gcgctgttgcacttgaacccg 1617
>emb|AL109756.9|HSDJ617C6 Human DNA sequence from clone RP4-617C6 on chromosome 1p13.3-22.1 Contains a novel gene, complete sequence Length = 111491 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 aaagtccaaagtaatgaaatt 26 ||||||||||||||||||||| Sbjct: 92800 aaagtccaaagtaatgaaatt 92820
>emb|AL079334.7|HSJ300O13 Human DNA sequence from clone RP1-300O13 on chromosome Xq22.1-24 Contains part of the AMMECR1 gene for Alport syndrome (mental retardation, midface hypoplasia and elliptocytosis, chromosomal region gene 1) (FLJ341111), complete sequence Length = 63660 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 aaagtccaaagtaatgaaatt 26 ||||||||||||||||||||| Sbjct: 3081 aaagtccaaagtaatgaaatt 3061
>gb|AF333040.1| Dunaliella salina beta-ketoacyl-CoA synthase mRNA, partial cds Length = 1863 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 396 gcgccacacggcgctgttgcacttgaacccgga 428 ||||||||| || |||||||||||||| ||||| Sbjct: 1743 gcgccacaccgcactgttgcacttgaagccgga 1711
>emb|CR936503.1| Lactobacillus sakei strain 23K complete genome Length = 1884661 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 acaactgctacaacaccagca 157 ||||||||||||||||||||| Sbjct: 187000 acaactgctacaacaccagca 186980
>emb|CR753890.27| Zebrafish DNA sequence from clone CH211-207D8 in linkage group 9, complete sequence Length = 201771 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 203 ttacatgcaaatccattagcc 223 ||||||||||||||||||||| Sbjct: 163393 ttacatgcaaatccattagcc 163373
>emb|AJ292770.1|ZMA292770 Zea mays mRNA for putative fatty acid longase (fae2 gene) Length = 2018 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 acggcgctgttgcacttgaa 422 |||||||||||||||||||| Sbjct: 1580 acggcgctgttgcacttgaa 1561
>emb|AL627344.8| Human DNA sequence from clone RP11-39H24 on chromosome 13, complete sequence Length = 97057 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 atgattaaaacccttaataa 131 |||||||||||||||||||| Sbjct: 26015 atgattaaaacccttaataa 25996
>ref|XM_782830.1| PREDICTED: Strongylocentrotus purpuratus similar to CG4006-PA, isoform A (LOC582897), mRNA Length = 1077 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 tttcacacaagagcgcgcac 74 |||||||||||||||||||| Sbjct: 1020 tttcacacaagagcgcgcac 1039
>gb|AC134432.4| Mus musculus BAC clone RP24-389K11 from chromosome 8, complete sequence Length = 150334 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 caaatccattagcctgcact 229 |||||||||||||||||||| Sbjct: 78811 caaatccattagcctgcact 78830
>gb|AC123908.3| Homo sapiens chromosome 16 clone CTD-2542L18, complete sequence Length = 185321 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 gcagtccagccaggggctcc 367 |||||||||||||||||||| Sbjct: 29847 gcagtccagccaggggctcc 29866
>gb|AC058784.17|AC058784 Homo sapiens chromosome 13 clone RP11-288O16, complete sequence Length = 163781 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 atgattaaaacccttaataa 131 |||||||||||||||||||| Sbjct: 125752 atgattaaaacccttaataa 125771
>gb|AC140006.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0090D11, complete sequence Length = 115403 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 acggcgctgttgcacttgaa 422 |||||||||||||||||||| Sbjct: 110089 acggcgctgttgcacttgaa 110108
>gb|AC104474.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024O21, complete sequence Length = 155651 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 acggcgctgttgcacttgaa 422 |||||||||||||||||||| Sbjct: 84686 acggcgctgttgcacttgaa 84705
>dbj|AK106150.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-H08, full insert sequence Length = 1892 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 acggcgctgttgcacttgaa 422 |||||||||||||||||||| Sbjct: 1560 acggcgctgttgcacttgaa 1541
>dbj|AK104714.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-H10, full insert sequence Length = 1892 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 acggcgctgttgcacttgaa 422 |||||||||||||||||||| Sbjct: 1560 acggcgctgttgcacttgaa 1541
>dbj|AK066587.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074H08, full insert sequence Length = 1966 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 acggcgctgttgcacttgaa 422 |||||||||||||||||||| Sbjct: 1561 acggcgctgttgcacttgaa 1542
>gb|AY109713.2| Zea mays CL1191_1 mRNA sequence Length = 1949 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 acggcgctgttgcacttgaa 422 |||||||||||||||||||| Sbjct: 1548 acggcgctgttgcacttgaa 1529
>emb|AM233362.1| Francisella tularensis subsp. holarctica strain LVS complete genome Length = 1895994 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 ctacaacaccagcacaaatt 163 |||||||||||||||||||| Sbjct: 1715372 ctacaacaccagcacaaatt 1715353
>emb|AJ749949.1| Francisella tularensis subsp. tularensis SCHU S4 complete genome Length = 1892819 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 ctacaacaccagcacaaatt 163 |||||||||||||||||||| Sbjct: 79459 ctacaacaccagcacaaatt 79478
>dbj|AP004939.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT17M09, TM0105, complete sequence Length = 127990 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 399 ccacacggcgctgttgcacttgaa 422 ||||||||||||||| |||||||| Sbjct: 85489 ccacacggcgctgttacacttgaa 85512
>emb|AL806516.4| Mouse DNA sequence from clone RP23-453N20 on chromosome X, complete sequence Length = 179534 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 aagttgacataagtttcaca 61 |||||||||||||||||||| Sbjct: 86401 aagttgacataagtttcaca 86382 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,062,610 Number of Sequences: 3902068 Number of extensions: 3062610 Number of successful extensions: 67086 Number of sequences better than 10.0: 86 Number of HSP's better than 10.0 without gapping: 92 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66454 Number of HSP's gapped (non-prelim): 631 length of query: 432 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 410 effective length of database: 17,147,199,772 effective search space: 7030351906520 effective search space used: 7030351906520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
