ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaet31h11 |
|---|---|
| Clone Library Name | barley_pub |
>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 96.7 bits (239), Expect = 1e-20 Identities = 46/49 (93%), Positives = 49/49 (100%) Frame = -2 Query: 302 ITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLES 156 ITLSVT++KPETGEVIGVFES+QPSDTDLGAKAPKDVKIQGVWYAQLES Sbjct: 281 ITLSVTQTKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES 329
>PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 96.3 bits (238), Expect = 2e-20 Identities = 45/48 (93%), Positives = 48/48 (100%) Frame = -2 Query: 302 ITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 159 ITLSVTKSKPETGEVIGVFES+QPSDTDLG+KAPKDVKIQG+WYAQLE Sbjct: 282 ITLSVTKSKPETGEVIGVFESIQPSDTDLGSKAPKDVKIQGIWYAQLE 329
>PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 94.4 bits (233), Expect = 7e-20 Identities = 44/48 (91%), Positives = 47/48 (97%) Frame = -2 Query: 302 ITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 159 ITLSVT+SKPETGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLE Sbjct: 285 ITLSVTQSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 332
>PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 94.4 bits (233), Expect = 7e-20 Identities = 44/48 (91%), Positives = 47/48 (97%) Frame = -2 Query: 302 ITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 159 ITLSVT+SKPETGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLE Sbjct: 282 ITLSVTQSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 329
>PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 325 Score = 94.0 bits (232), Expect = 9e-20 Identities = 48/51 (94%), Positives = 49/51 (96%) Frame = -2 Query: 305 NITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLESN 153 NITLSVTKSKPETGEVIGVFESVQPSDTDL +APKDVKIQGVWYAQLESN Sbjct: 277 NITLSVTKSKPETGEVIGVFESVQPSDTDL--EAPKDVKIQGVWYAQLESN 325
>PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 92.4 bits (228), Expect = 3e-19 Identities = 44/48 (91%), Positives = 45/48 (93%) Frame = -2 Query: 302 ITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 159 ITL VTKSKPETGEVIGVFES+QPSDTDLGAK PKDVKIQGVWY QLE Sbjct: 285 ITLKVTKSKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQLE 332
>PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 333 Score = 91.7 bits (226), Expect = 4e-19 Identities = 42/49 (85%), Positives = 46/49 (93%) Frame = -2 Query: 302 ITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLES 156 IT +VTKS P+TGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLES Sbjct: 285 ITFTVTKSNPQTGEVIGVFESIQPSDTDLGAKTPKDVKIQGIWYAQLES 333
>PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 331 Score = 91.3 bits (225), Expect = 6e-19 Identities = 42/48 (87%), Positives = 45/48 (93%) Frame = -2 Query: 302 ITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 159 ITL +TKSKPETGEVIGVFES+QPSDTDLGAK PKDVKIQGVWY Q+E Sbjct: 284 ITLKITKSKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQIE 331
>PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 91.3 bits (225), Expect = 6e-19 Identities = 43/48 (89%), Positives = 46/48 (95%) Frame = -2 Query: 302 ITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 159 ITLSVT SKPETGEVIGVF+S+QPSDTDLGAK PKDVKI+GVWYAQLE Sbjct: 283 ITLSVTSSKPETGEVIGVFQSLQPSDTDLGAKVPKDVKIEGVWYAQLE 330
>PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 291 Score = 73.6 bits (179), Expect = 1e-13 Identities = 32/45 (71%), Positives = 38/45 (84%) Frame = -2 Query: 293 SVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 159 SV K P TGE+ GVFES+QPSDTDLGAK PKD+K+ G+WYAQL+ Sbjct: 247 SVAKVDPVTGEIAGVFESIQPSDTDLGAKPPKDIKVTGLWYAQLK 291
>PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 338 Score = 72.8 bits (177), Expect = 2e-13 Identities = 32/47 (68%), Positives = 36/47 (76%) Frame = -2 Query: 302 ITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 162 I V K ETGE+ GVFES+QPSDTDLGAK PKD+K GVWYAQ+ Sbjct: 288 IAFKVAKVNAETGEIAGVFESIQPSDTDLGAKVPKDIKTSGVWYAQI 334
>PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 293 Score = 69.7 bits (169), Expect = 2e-12 Identities = 31/44 (70%), Positives = 35/44 (79%) Frame = -2 Query: 293 SVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 162 SV K TGE+ GVFES+QPSDTDLGAK PKD+KI G+WY QL Sbjct: 248 SVAKVNTATGEIAGVFESIQPSDTDLGAKPPKDIKITGLWYGQL 291
>PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 275 Score = 63.2 bits (152), Expect = 2e-10 Identities = 29/48 (60%), Positives = 39/48 (81%) Frame = -2 Query: 305 NITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 162 +I+L VTK TGE+ GVF+S QPSDTDLGAK P +VKI+G++YA++ Sbjct: 224 SISLQVTKVDQATGEIAGVFDSEQPSDTDLGAKEPVEVKIRGIFYARV 271
>PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 274 Score = 62.4 bits (150), Expect = 3e-10 Identities = 26/50 (52%), Positives = 40/50 (80%) Frame = -2 Query: 302 ITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLESN 153 ++L VT+ TGE+ G+FES QPSDTDLGAK P DVK++G++Y +++++ Sbjct: 224 LSLQVTQVDGSTGEIAGIFESEQPSDTDLGAKEPLDVKVRGIFYGRVDTD 273
>PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 273 Score = 61.2 bits (147), Expect = 6e-10 Identities = 27/48 (56%), Positives = 37/48 (77%) Frame = -2 Query: 302 ITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 159 I+L + K +GE+ G FES QPSDTDLGA PK+VKI+G++YA++E Sbjct: 226 ISLQIAKVDSSSGEIAGTFESEQPSDTDLGADEPKEVKIRGIFYARVE 273
>PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 55.8 bits (133), Expect = 3e-08 Identities = 27/48 (56%), Positives = 34/48 (70%) Frame = -2 Query: 302 ITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 159 I+L+V K TGE+ G FES Q SD D+GA P +VKIQGV+YA +E Sbjct: 223 ISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270
>PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 55.8 bits (133), Expect = 3e-08 Identities = 27/48 (56%), Positives = 34/48 (70%) Frame = -2 Query: 302 ITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 159 I+L+V K TGE+ G FES Q SD D+GA P +VKIQGV+YA +E Sbjct: 223 ISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270
>PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 277 Score = 54.3 bits (129), Expect = 8e-08 Identities = 25/48 (52%), Positives = 35/48 (72%) Frame = -2 Query: 302 ITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 159 I+L+V+K TGEV GVF ++QPSDTD+G K DVK+ G +Y ++E Sbjct: 226 ISLAVSKVDGATGEVAGVFTAIQPSDTDMGGKEAVDVKLVGQFYGRIE 273
>CH10_ENTFA (Q93EU7) 10 kDa chaperonin (Protein Cpn10) (groES protein)| Length = 94 Score = 31.6 bits (70), Expect = 0.53 Identities = 18/39 (46%), Positives = 22/39 (56%) Frame = -2 Query: 302 ITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKI 186 + SV K KP+TGEVI V E + G K P +VKI Sbjct: 25 VLASVAKEKPQTGEVIAVGEG---RVLENGTKVPMEVKI 60
>MECR_RAT (Q9Z311) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC| 1.3.1.38) (Nuclear receptor-binding factor 1) (NRBF-1) Length = 373 Score = 30.0 bits (66), Expect = 1.5 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = -2 Query: 236 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVK--ILIFCACIR 105 QP + KD+K++G W +Q + N S E K ILI C IR Sbjct: 291 QPVTASVSMLIFKDLKLRGFWLSQWKKNHSPDEFKELILILCNLIR 336
>MECR_MOUSE (Q9DCS3) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC| 1.3.1.38) Length = 373 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = -2 Query: 236 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVKILIFCAC 111 QP + KD+K++G W +Q + N S E K LI C Sbjct: 291 QPVTASVSLLIFKDLKLRGFWLSQWKKNHSPDEFKELILTLC 332
>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)| Length = 644 Score = 29.3 bits (64), Expect = 2.6 Identities = 19/77 (24%), Positives = 36/77 (46%) Frame = +1 Query: 52 YTHKHIVASILSSPPTNPRMHAQKMSIFTSAML*LDSSCAYHTPWILTSLGALAPRSVSD 231 Y H S ++ PP P + Q+M+ TS+ ++ PW +S A+ P + S Sbjct: 474 YQHSTSAGSSVNPPPPPPPLFQQQMTTTTSSA----AASFVEQPWSSSSSRAIQPATTS- 528 Query: 232 GCTLSKTPITSPVSGLL 282 + S + +SP + ++ Sbjct: 529 ASSSSSSSASSPAAAVV 545
>ILVC_HELPJ (Q9ZMA9) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 330 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/25 (60%), Positives = 19/25 (76%) Frame = -2 Query: 299 TLSVTKSKPETGEVIGVFESVQPSD 225 +LSV+K+K E EV+GV E VQ SD Sbjct: 52 SLSVSKAKKEGFEVLGVKELVQQSD 76
>DPOL_NPVAC (P18131) DNA polymerase (EC 2.7.7.7)| Length = 984 Score = 28.1 bits (61), Expect = 5.9 Identities = 14/47 (29%), Positives = 21/47 (44%) Frame = +3 Query: 54 HTQTHCCLDSFLSTDQPTYACTKDEYLHFCYALVRLELRVPHTLDLD 194 H + +D +S Y DEY FC+ +L ++P T D D Sbjct: 204 HNMSKASVDCIMSIGFVVYK--NDEYAKFCFMYHKLPTQIPETYDDD 248
>PI52A_CHICK (Q5F356) Phosphatidylinositol-4-phosphate 5-kinase type-2 alpha (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type II alpha) (1-phosphatidylinositol-4-phosphate 5-kinase 2-alpha) (PtdIns(4)P-5-kinase isoform 2-alpha) (PIP5KII-alpha Length = 405 Score = 27.7 bits (60), Expect = 7.7 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +2 Query: 41 FILDTHTNTLLPRFFPLHRPT 103 FI++ H NTLLP+F ++R T Sbjct: 164 FIVECHGNTLLPQFLGMYRLT 184
>TIBA_ECOLI (Q9XD84) Adhesin/invasin tibA precursor (Glycoprotein tibA)| Length = 989 Score = 27.7 bits (60), Expect = 7.7 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -2 Query: 272 ETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWY 171 E G + VF+ Q SDT +G+ DV+ GV Y Sbjct: 347 ENGGYLTVFDGHQASDTMVGSDGTLDVRSGGVLY 380
>PI52B_RAT (O88377) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type II beta) (1-phosphatidylinositol-4-phosphate 5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta) (PIP5KII-beta) (Diph Length = 416 Score = 27.7 bits (60), Expect = 7.7 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +2 Query: 41 FILDTHTNTLLPRFFPLHRPT 103 FI++ H NTLLP+F ++R T Sbjct: 170 FIVECHGNTLLPQFLGMYRLT 190
>PI52B_MOUSE (Q80XI4) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type II beta) (1-phosphatidylinositol-4-phosphate 5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta) (PIP5KII-beta) (Di Length = 416 Score = 27.7 bits (60), Expect = 7.7 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +2 Query: 41 FILDTHTNTLLPRFFPLHRPT 103 FI++ H NTLLP+F ++R T Sbjct: 170 FIVECHGNTLLPQFLGMYRLT 190
>PI52B_HUMAN (P78356) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type II beta) (1-phosphatidylinositol-4-phosphate 5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta) (PIP5KII-beta) (Di Length = 416 Score = 27.7 bits (60), Expect = 7.7 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +2 Query: 41 FILDTHTNTLLPRFFPLHRPT 103 FI++ H NTLLP+F ++R T Sbjct: 170 FIVECHGNTLLPQFLGMYRLT 190
>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)| (Usher syndrome type IIa protein homolog) Length = 5193 Score = 27.7 bits (60), Expect = 7.7 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +3 Query: 63 THCCLDSFLSTDQPTYACTKDEYL 134 T C D L QP Y+C +D+Y+ Sbjct: 3180 TKVCCDGLLYDPQPGYSCCEDKYI 3203
>KCNKA_RAT (Q9JIS4) Potassium channel subfamily K member 10 (Outward| rectifying potassium channel protein TREK-2) (TREK-2 K(+) channel subunit) Length = 538 Score = 27.7 bits (60), Expect = 7.7 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Frame = +3 Query: 84 FLSTDQPTYACTKDEYL--HFCYALVRLELRVPHTLDLDILG 203 F S+ + T A K E+L H C + LE + H LD D G Sbjct: 97 FESSQKNTIALEKAEFLRDHICVSPQELETLIQHALDADNAG 138 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,179,137 Number of Sequences: 219361 Number of extensions: 706899 Number of successful extensions: 2269 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 2238 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2268 length of database: 80,573,946 effective HSP length: 77 effective length of database: 63,683,149 effective search space used: 1528395576 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
