ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet31g09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192999.1| Oryza sativa (japonica cultivar-group), predic... 127 3e-26
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 127 3e-26
3dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic D... 127 3e-26
4dbj|AP003546.4| Oryza sativa (japonica cultivar-group) genomic D... 127 3e-26
5dbj|AK102472.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 3e-26
6gb|DQ428549.1| Sorghum propinquum locus PRC1149 genomic sequence 100 6e-18
7gb|DQ428548.1| Sorghum bicolor voucher PI585454 locus PRC1149 ge... 100 6e-18
8gb|DQ428547.1| Sorghum bicolor voucher PI267539 locus PRC1149 ge... 100 6e-18
9gb|DQ428546.1| Sorghum bicolor voucher PI267408 locus PRC1149 ge... 100 6e-18
10gb|DQ428545.1| Sorghum bicolor voucher PI221607 locus PRC1149 ge... 100 6e-18
11gb|DQ428544.1| Sorghum bicolor voucher PI152702 locus PRC1149 ge... 100 6e-18
12gb|DQ428543.1| Sorghum bicolor voucher NSL92371 locus PRC1149 ge... 100 6e-18
13gb|DQ428542.1| Sorghum bicolor voucher NSL87902 locus PRC1149 ge... 100 6e-18
14gb|DQ428541.1| Sorghum bicolor voucher NSL77217 locus PRC1149 ge... 100 6e-18
15gb|DQ428540.1| Sorghum bicolor voucher NSL77034 locus PRC1149 ge... 100 6e-18
16gb|DQ428539.1| Sorghum bicolor voucher NSL56174 locus PRC1149 ge... 100 6e-18
17gb|DQ428538.1| Sorghum bicolor voucher NSL56003 locus PRC1149 ge... 100 6e-18
18gb|DQ428537.1| Sorghum bicolor voucher NSL55243 locus PRC1149 ge... 100 6e-18
19gb|DQ428536.1| Sorghum bicolor voucher NSL51365 locus PRC1149 ge... 100 6e-18
20gb|DQ428535.1| Sorghum bicolor voucher NSL51030 locus PRC1149 ge... 100 6e-18
21gb|DQ428534.1| Sorghum bicolor voucher NSL50875 locus PRC1149 ge... 100 6e-18
22gb|DQ428533.1| Sorghum bicolor voucher BTx623 locus PRC1149 geno... 100 6e-18
23gb|AC024772.1| Caenorhabditis elegans cosmid Y40C5A, complete se... 42 1.2
24ref|NM_187384.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.9
25gb|AC111024.13| Mus musculus chromosome 17, clone RP23-103P1, co... 40 4.9
26gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 40 4.9
27emb|X90711.1|BPLPSBLOC Bordetella pertussis lipopolysaccharide b... 40 4.9
28emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete ... 40 4.9
29emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete ... 40 4.9
30emb|BX640423.1| Bordetella parapertussis strain 12822, complete ... 40 4.9
31emb|BX640411.1| Bordetella pertussis strain Tohama I, complete g... 40 4.9
32emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromosome 4,... 40 4.9
33emb|AJ007747.1|BBR007747 Bordetella bronchiseptica cosmid BbLPS1 40 4.9
34gb|AC010007.4| Drosophila melanogaster 3L BAC RP98-17K17 (Roswel... 40 4.9
35gb|U42839.2| Caenorhabditis elegans cosmid F11C7, complete sequence 40 4.9
36gb|AF332532.1|AF332532 Eimeria peromysci 23S ribosomal RNA gene,... 40 4.9
37dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
38dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
39gb|AC154798.2| Mus musculus BAC clone RP24-495N16 from chromosom... 40 4.9
40dbj|AP004006.5| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
41dbj|AP004259.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
42dbj|AK070786.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.9
43emb|AL732334.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 4.9
44gb|AE003471.3| Drosophila melanogaster chromosome 3L, section 5 ... 40 4.9
45gb|AC005847.1|AC005847 Drosophila melanogaster DNA sequence (P1s... 40 4.9
46dbj|AB231866.1| Branchiostoma floridae gene for zinc finger prot... 40 4.9 
>ref|NM_192999.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 939

 Score =  127 bits (64), Expect = 3e-26
 Identities = 88/96 (91%)
 Strand = Plus / Minus

                                                                       
Query: 198 agctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctggtagtag 257
           |||| |||||||||||| ||||| || | ||||||| | |||||||||||||||||||||
Sbjct: 929 agcttcttgacggcctggaacctagcggtcttgtcgccgaacttggtgccctggtagtag 870

                                               
Query: 258 tccaggtagtcgccgaacctgtacggcccggggtac 293
           ||||||||||||||| ||||||||||||||||||||
Sbjct: 869 tccaggtagtcgccgtacctgtacggcccggggtac 834
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  127 bits (64), Expect = 3e-26
 Identities = 88/96 (91%)
 Strand = Plus / Minus

                                                                            
Query: 198      agctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctggtagtag 257
                |||| |||||||||||| ||||| || | ||||||| | |||||||||||||||||||||
Sbjct: 22486945 agcttcttgacggcctggaacctagcggtcttgtcgccgaacttggtgccctggtagtag 22486886

                                                    
Query: 258      tccaggtagtcgccgaacctgtacggcccggggtac 293
                ||||||||||||||| ||||||||||||||||||||
Sbjct: 22486885 tccaggtagtcgccgtacctgtacggcccggggtac 22486850
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>dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1097D05
          Length = 144879

 Score =  127 bits (64), Expect = 3e-26
 Identities = 88/96 (91%)
 Strand = Plus / Minus

                                                                        
Query: 198  agctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctggtagtag 257
            |||| |||||||||||| ||||| || | ||||||| | |||||||||||||||||||||
Sbjct: 2682 agcttcttgacggcctggaacctagcggtcttgtcgccgaacttggtgccctggtagtag 2623

                                                
Query: 258  tccaggtagtcgccgaacctgtacggcccggggtac 293
            ||||||||||||||| ||||||||||||||||||||
Sbjct: 2622 tccaggtagtcgccgtacctgtacggcccggggtac 2587
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>dbj|AP003546.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0672C09
          Length = 145655

 Score =  127 bits (64), Expect = 3e-26
 Identities = 88/96 (91%)
 Strand = Plus / Minus

                                                                          
Query: 198    agctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctggtagtag 257
              |||| |||||||||||| ||||| || | ||||||| | |||||||||||||||||||||
Sbjct: 111083 agcttcttgacggcctggaacctagcggtcttgtcgccgaacttggtgccctggtagtag 111024

                                                  
Query: 258    tccaggtagtcgccgaacctgtacggcccggggtac 293
              ||||||||||||||| ||||||||||||||||||||
Sbjct: 111023 tccaggtagtcgccgtacctgtacggcccggggtac 110988
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>dbj|AK102472.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094H01, full
            insert sequence
          Length = 1183

 Score =  127 bits (64), Expect = 3e-26
 Identities = 88/96 (91%)
 Strand = Plus / Minus

                                                                        
Query: 198  agctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctggtagtag 257
            |||| |||||||||||| ||||| || | ||||||| | |||||||||||||||||||||
Sbjct: 1051 agcttcttgacggcctggaacctagcggtcttgtcgccgaacttggtgccctggtagtag 992

                                                
Query: 258  tccaggtagtcgccgaacctgtacggcccggggtac 293
            ||||||||||||||| ||||||||||||||||||||
Sbjct: 991  tccaggtagtcgccgtacctgtacggcccggggtac 956
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>gb|DQ428549.1| Sorghum propinquum locus PRC1149 genomic sequence
          Length = 632

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 89/102 (87%)
 Strand = Plus / Minus

                                                                       
Query: 192 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 251
           |||| ||||| |||||||||||| ||||| ||  |||||||| | |||||||||||||||
Sbjct: 338 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 279

                                                     
Query: 252 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 293
           ||||| || |||||||| ||||||||||| || |||||||||
Sbjct: 278 tagtactcgaggtagtccccgaacctgtagggtccggggtac 237
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>gb|DQ428548.1| Sorghum bicolor voucher PI585454 locus PRC1149 genomic sequence
          Length = 635

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 89/102 (87%)
 Strand = Plus / Minus

                                                                       
Query: 192 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 251
           |||| ||||| |||||||||||| ||||| ||  |||||||| | |||||||||||||||
Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276

                                                     
Query: 252 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 293
           ||||| || |||||||| ||||||||||| || |||||||||
Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234
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>gb|DQ428547.1| Sorghum bicolor voucher PI267539 locus PRC1149 genomic sequence
          Length = 635

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 89/102 (87%)
 Strand = Plus / Minus

                                                                       
Query: 192 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 251
           |||| ||||| |||||||||||| ||||| ||  |||||||| | |||||||||||||||
Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276

                                                     
Query: 252 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 293
           ||||| || |||||||| ||||||||||| || |||||||||
Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234
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>gb|DQ428546.1| Sorghum bicolor voucher PI267408 locus PRC1149 genomic sequence
          Length = 634

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 89/102 (87%)
 Strand = Plus / Minus

                                                                       
Query: 192 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 251
           |||| ||||| |||||||||||| ||||| ||  |||||||| | |||||||||||||||
Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276

                                                     
Query: 252 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 293
           ||||| || |||||||| ||||||||||| || |||||||||
Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234
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>gb|DQ428545.1| Sorghum bicolor voucher PI221607 locus PRC1149 genomic sequence
          Length = 635

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 89/102 (87%)
 Strand = Plus / Minus

                                                                       
Query: 192 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 251
           |||| ||||| |||||||||||| ||||| ||  |||||||| | |||||||||||||||
Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276

                                                     
Query: 252 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 293
           ||||| || |||||||| ||||||||||| || |||||||||
Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234
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>gb|DQ428544.1| Sorghum bicolor voucher PI152702 locus PRC1149 genomic sequence
          Length = 640

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 89/102 (87%)
 Strand = Plus / Minus

                                                                       
Query: 192 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 251
           |||| ||||| |||||||||||| ||||| ||  |||||||| | |||||||||||||||
Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276

                                                     
Query: 252 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 293
           ||||| || |||||||| ||||||||||| || |||||||||
Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234
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>gb|DQ428543.1| Sorghum bicolor voucher NSL92371 locus PRC1149 genomic sequence
          Length = 642

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 89/102 (87%)
 Strand = Plus / Minus

                                                                       
Query: 192 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 251
           |||| ||||| |||||||||||| ||||| ||  |||||||| | |||||||||||||||
Sbjct: 332 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 273

                                                     
Query: 252 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 293
           ||||| || |||||||| ||||||||||| || |||||||||
Sbjct: 272 tagtactcgaggtagtccccgaacctgtagggtccggggtac 231
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>gb|DQ428542.1| Sorghum bicolor voucher NSL87902 locus PRC1149 genomic sequence
          Length = 642

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 89/102 (87%)
 Strand = Plus / Minus

                                                                       
Query: 192 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 251
           |||| ||||| |||||||||||| ||||| ||  |||||||| | |||||||||||||||
Sbjct: 332 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 273

                                                     
Query: 252 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 293
           ||||| || |||||||| ||||||||||| || |||||||||
Sbjct: 272 tagtactcgaggtagtccccgaacctgtagggtccggggtac 231
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>gb|DQ428541.1| Sorghum bicolor voucher NSL77217 locus PRC1149 genomic sequence
          Length = 635

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 89/102 (87%)
 Strand = Plus / Minus

                                                                       
Query: 192 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 251
           |||| ||||| |||||||||||| ||||| ||  |||||||| | |||||||||||||||
Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276

                                                     
Query: 252 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 293
           ||||| || |||||||| ||||||||||| || |||||||||
Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234
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>gb|DQ428540.1| Sorghum bicolor voucher NSL77034 locus PRC1149 genomic sequence
          Length = 635

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 89/102 (87%)
 Strand = Plus / Minus

                                                                       
Query: 192 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 251
           |||| ||||| |||||||||||| ||||| ||  |||||||| | |||||||||||||||
Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276

                                                     
Query: 252 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 293
           ||||| || |||||||| ||||||||||| || |||||||||
Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234
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>gb|DQ428539.1| Sorghum bicolor voucher NSL56174 locus PRC1149 genomic sequence
          Length = 635

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 89/102 (87%)
 Strand = Plus / Minus

                                                                       
Query: 192 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 251
           |||| ||||| |||||||||||| ||||| ||  |||||||| | |||||||||||||||
Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276

                                                     
Query: 252 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 293
           ||||| || |||||||| ||||||||||| || |||||||||
Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234
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>gb|DQ428538.1| Sorghum bicolor voucher NSL56003 locus PRC1149 genomic sequence
          Length = 635

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 89/102 (87%)
 Strand = Plus / Minus

                                                                       
Query: 192 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 251
           |||| ||||| |||||||||||| ||||| ||  |||||||| | |||||||||||||||
Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276

                                                     
Query: 252 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 293
           ||||| || |||||||| ||||||||||| || |||||||||
Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234
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>gb|DQ428537.1| Sorghum bicolor voucher NSL55243 locus PRC1149 genomic sequence
          Length = 635

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 89/102 (87%)
 Strand = Plus / Minus

                                                                       
Query: 192 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 251
           |||| ||||| |||||||||||| ||||| ||  |||||||| | |||||||||||||||
Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276

                                                     
Query: 252 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 293
           ||||| || |||||||| ||||||||||| || |||||||||
Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234
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>gb|DQ428536.1| Sorghum bicolor voucher NSL51365 locus PRC1149 genomic sequence
          Length = 640

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 89/102 (87%)
 Strand = Plus / Minus

                                                                       
Query: 192 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 251
           |||| ||||| |||||||||||| ||||| ||  |||||||| | |||||||||||||||
Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276

                                                     
Query: 252 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 293
           ||||| || |||||||| ||||||||||| || |||||||||
Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234
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>gb|DQ428535.1| Sorghum bicolor voucher NSL51030 locus PRC1149 genomic sequence
          Length = 635

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 89/102 (87%)
 Strand = Plus / Minus

                                                                       
Query: 192 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 251
           |||| ||||| |||||||||||| ||||| ||  |||||||| | |||||||||||||||
Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276

                                                     
Query: 252 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 293
           ||||| || |||||||| ||||||||||| || |||||||||
Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234
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>gb|DQ428534.1| Sorghum bicolor voucher NSL50875 locus PRC1149 genomic sequence
          Length = 639

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 89/102 (87%)
 Strand = Plus / Minus

                                                                       
Query: 192 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 251
           |||| ||||| |||||||||||| ||||| ||  |||||||| | |||||||||||||||
Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276

                                                     
Query: 252 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 293
           ||||| || |||||||| ||||||||||| || |||||||||
Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234
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>gb|DQ428533.1| Sorghum bicolor voucher BTx623 locus PRC1149 genomic sequence
          Length = 635

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 89/102 (87%)
 Strand = Plus / Minus

                                                                       
Query: 192 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 251
           |||| ||||| |||||||||||| ||||| ||  |||||||| | |||||||||||||||
Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276

                                                     
Query: 252 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 293
           ||||| || |||||||| ||||||||||| || |||||||||
Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234
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>gb|AC024772.1| Caenorhabditis elegans cosmid Y40C5A, complete sequence
          Length = 45870

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 92    gattttccgaaaaaagaaacaaatc 116
             ||||||| |||||||||||||||||
Sbjct: 21876 gattttctgaaaaaagaaacaaatc 21852
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>ref|NM_187384.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3825

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 292  acacctgcctcgccgtgggc 311
            ||||||||||||||||||||
Sbjct: 3766 acacctgcctcgccgtgggc 3747
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>gb|AC111024.13| Mus musculus chromosome 17, clone RP23-103P1, complete sequence
          Length = 219128

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     agattttccgaaaaaagaaa 110
              ||||||||||||||||||||
Sbjct: 215087 agattttccgaaaaaagaaa 215068
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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 313     ccggcgccacgacggcttccgccc 336
               |||||||||||||||||| |||||
Sbjct: 2185950 ccggcgccacgacggcttacgccc 2185973
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>emb|X90711.1|BPLPSBLOC Bordetella pertussis lipopolysaccharide biosynthesis locus baf gene,
            waaA, waaB & wlbA,B,C,D,E,F,G,H,I,J & L genes
          Length = 15389

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 302  cgccgtgggcgccggcgccacgacggcttccg 333
            ||||| |||||||||||||||| ||| |||||
Sbjct: 5317 cgccgagggcgccggcgccacgccggtttccg 5348
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>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 302    cgccgtgggcgccggcgcca 321
              ||||||||||||||||||||
Sbjct: 178967 cgccgtgggcgccggcgcca 178986
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>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16
          Length = 347356

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 302    cgccgtgggcgccggcgccacgacggcttccg 333
              ||||| |||||||||||||||| ||| |||||
Sbjct: 164731 cgccgagggcgccggcgccacgccggtttccg 164700
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>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14
          Length = 348251

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 302    cgccgtgggcgccggcgccacgacggcttccg 333
              ||||| |||||||||||||||| ||| |||||
Sbjct: 168179 cgccgagggcgccggcgccacgccggtttccg 168148
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>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12
          Length = 346359

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 302   cgccgtgggcgccggcgccacgacggcttccg 333
             ||||| |||||||||||||||| ||| |||||
Sbjct: 89243 cgccgagggcgccggcgccacgccggtttccg 89212
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>emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003B01,
             complete sequence
          Length = 153643

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 297   tgcctcgccgtgggcgccggcgcc 320
             ||||||||||||| ||||||||||
Sbjct: 34247 tgcctcgccgtggtcgccggcgcc 34270
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>emb|AJ007747.1|BBR007747 Bordetella bronchiseptica cosmid BbLPS1
          Length = 41642

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 302   cgccgtgggcgccggcgccacgacggcttccg 333
             ||||| |||||||||||||||| ||| |||||
Sbjct: 36248 cgccgagggcgccggcgccacgccggtttccg 36217
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>gb|AC010007.4| Drosophila melanogaster 3L BAC RP98-17K17 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 175481

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    ttttccgaaaaaagaaacaa 113
             ||||||||||||||||||||
Sbjct: 94172 ttttccgaaaaaagaaacaa 94153
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>gb|U42839.2| Caenorhabditis elegans cosmid F11C7, complete sequence
          Length = 39556

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 93   attttccgaaaaaagaaaca 112
            ||||||||||||||||||||
Sbjct: 1740 attttccgaaaaaagaaaca 1721
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>gb|AF332532.1|AF332532 Eimeria peromysci 23S ribosomal RNA gene, partial sequence;
            apicoplast gene for apicoplast product
          Length = 1172

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 285  ccggggtacacctgcctcgc 304
            ||||||||||||||||||||
Sbjct: 1036 ccggggtacacctgcctcgc 1017
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 297      tgcctcgccgtgggcgccggcgcc 320
                ||||||||||||| ||||||||||
Sbjct: 32515513 tgcctcgccgtggtcgccggcgcc 32515536
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 292      acacctgcctcgccgtgggc 311
                ||||||||||||||||||||
Sbjct: 18634872 acacctgcctcgccgtgggc 18634891
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>gb|AC154798.2| Mus musculus BAC clone RP24-495N16 from chromosome 17, complete sequence
          Length = 138195

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     agattttccgaaaaaagaaa 110
              ||||||||||||||||||||
Sbjct: 124950 agattttccgaaaaaagaaa 124969
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>dbj|AP004006.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1197_D06
          Length = 103844

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   acacctgcctcgccgtgggc 311
             ||||||||||||||||||||
Sbjct: 59926 acacctgcctcgccgtgggc 59945
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>dbj|AP004259.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0005E02
          Length = 89380

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   acacctgcctcgccgtgggc 311
             ||||||||||||||||||||
Sbjct: 87414 acacctgcctcgccgtgggc 87433
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>dbj|AK070786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064M09, full
           insert sequence
          Length = 1258

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 297 tgcctcgccgtgggcgccggcgcc 320
           ||||||||||||| ||||||||||
Sbjct: 520 tgcctcgccgtggtcgccggcgcc 543
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>emb|AL732334.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0323C08, complete
             sequence
          Length = 94903

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 298   gcctcgccgtgggcgccggcgcca 321
             |||||||||| |||||||||||||
Sbjct: 26304 gcctcgccgtcggcgccggcgcca 26327
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>gb|AE003471.3| Drosophila melanogaster chromosome 3L, section 5 of 83 of the complete
             sequence
          Length = 302131

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    ttttccgaaaaaagaaacaa 113
             ||||||||||||||||||||
Sbjct: 80914 ttttccgaaaaaagaaacaa 80895
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>gb|AC005847.1|AC005847 Drosophila melanogaster DNA sequence (P1s DS03179 (D226), DS06357 (D230),
              DS03404 (D231), DS06962 (D232), and DS07291 (D240)),
              complete sequence
          Length = 268369

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     ttttccgaaaaaagaaacaa 113
              ||||||||||||||||||||
Sbjct: 131494 ttttccgaaaaaagaaacaa 131513
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>dbj|AB231866.1| Branchiostoma floridae gene for zinc finger protein AmphiZic, complete
              cds
          Length = 155361

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 153    gcacactgcacacccagtca 172
              ||||||||||||||||||||
Sbjct: 104793 gcacactgcacacccagtca 104812


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,649,464
Number of Sequences: 3902068
Number of extensions: 2649464
Number of successful extensions: 71950
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71757
Number of HSP's gapped (non-prelim): 193
length of query: 369
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 347
effective length of database: 17,147,199,772
effective search space: 5950078320884
effective search space used: 5950078320884
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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