ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet31g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470453.1| Oryza sativa (japonica cultivar-group), mRNA 94 3e-16
2gb|AC120506.5| Oryza sativa (japonica cultivar-group) chromosome... 94 3e-16
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 94 3e-16
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 94 3e-16
5dbj|AK104577.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 3e-16
6dbj|AK071886.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 3e-16
7ref|XM_482634.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.1
8ref|NM_008235.2| Mus musculus hairy and enhancer of split 1 (Dro... 42 1.1
9gb|BC051428.1| Mus musculus hairy and enhancer of split 1 (Droso... 42 1.1
10ref|NM_024360.2| Rattus norvegicus hairy and enhancer of split 1... 42 1.1
11dbj|AK133538.1| Mus musculus 10 days neonate intestine cDNA, RIK... 42 1.1
12dbj|AK132536.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 42 1.1
13gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.1
14dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
15gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.1
16gb|BC061730.1| Rattus norvegicus hairy and enhancer of split 1 (... 42 1.1
17dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
18dbj|AK106769.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
19gb|BC018375.1| Mus musculus hairy and enhancer of split 1 (Droso... 42 1.1
20dbj|D16464.1|MUSHES1 Mus musculus gene for helix-loop-helix fact... 42 1.1
21emb|CT030736.8| Mouse DNA sequence from clone RP23-396K21 on chr... 42 1.1
22gb|L04527.1|RATHAIRY Rattus norvegicus (clone pCDM8/rathairy 1) ... 42 1.1
23dbj|D13417.1|RATHES1A Rattus norvegicus mRNA for transcription f... 42 1.1
24ref|XM_507386.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 4.2
25ref|XM_478948.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.2
26ref|XM_506437.2| PREDICTED Oryza sativa (japonica cultivar-group... 40 4.2
27gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.2
28gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 4.2
29gb|AC097469.2| Homo sapiens BAC clone RP11-55N4 from 4, complete... 40 4.2
30dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
31dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
32gb|AC007388.4| Homo sapiens BAC clone RP11-395B14 from 2, comple... 40 4.2
33dbj|AP005149.4| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
34dbj|AP003750.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
35dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 4.2
36dbj|AK122091.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2
37dbj|AK104756.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2
38dbj|AK104617.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2
39dbj|AK072501.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2
40dbj|AK067862.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2
41gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 4.2
42gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 4.2 
>ref|XM_470453.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1215

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 128/155 (82%)
 Strand = Plus / Minus

                                                                        
Query: 165  accttggactctccccaccgctcgaacatctgccgctccgccgcgttcacctcgcactcc 224
            ||||||||||| |||||| ||  | |||||||||||||||||  ||| || |||||||||
Sbjct: 1103 accttggactccccccactgccagtacatctgccgctccgccatgttgacgtcgcactcc 1044

                                                                        
Query: 225  ggcagcgccgccgggtaccggtccgtgtcgtagcacaccgtgtacaccatctgcttccgc 284
            || | || | ||||||||| ||  |||||||||||||| ||||| | |||||||  | ||
Sbjct: 1043 gggaacggctccgggtacctgttggtgtcgtagcacacggtgtagagcatctgccgctgc 984

                                               
Query: 285  ctgaaccgccgcatggcctcgcgcttccgcgccgt 319
            |||||||||||||| |||   ||||||| ||||||
Sbjct: 983  ctgaaccgccgcatcgccatccgcttcctcgccgt 949
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>gb|AC120506.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006O08
             map S15179S, complete sequence
          Length = 166005

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 128/155 (82%)
 Strand = Plus / Plus

                                                                         
Query: 165   accttggactctccccaccgctcgaacatctgccgctccgccgcgttcacctcgcactcc 224
             ||||||||||| |||||| ||  | |||||||||||||||||  ||| || |||||||||
Sbjct: 88607 accttggactccccccactgccagtacatctgccgctccgccatgttgacgtcgcactcc 88666

                                                                         
Query: 225   ggcagcgccgccgggtaccggtccgtgtcgtagcacaccgtgtacaccatctgcttccgc 284
             || | || | ||||||||| ||  |||||||||||||| ||||| | |||||||  | ||
Sbjct: 88667 gggaacggctccgggtacctgttggtgtcgtagcacacggtgtagagcatctgccgctgc 88726

                                                
Query: 285   ctgaaccgccgcatggcctcgcgcttccgcgccgt 319
             |||||||||||||| |||   ||||||| ||||||
Sbjct: 88727 ctgaaccgccgcatcgccatccgcttcctcgccgt 88761
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 128/155 (82%)
 Strand = Plus / Plus

                                                                            
Query: 165      accttggactctccccaccgctcgaacatctgccgctccgccgcgttcacctcgcactcc 224
                ||||||||||| |||||| ||  | |||||||||||||||||  ||| || |||||||||
Sbjct: 35690829 accttggactccccccactgccagtacatctgccgctccgccatgttgacgtcgcactcc 35690888

                                                                            
Query: 225      ggcagcgccgccgggtaccggtccgtgtcgtagcacaccgtgtacaccatctgcttccgc 284
                || | || | ||||||||| ||  |||||||||||||| ||||| | |||||||  | ||
Sbjct: 35690889 gggaacggctccgggtacctgttggtgtcgtagcacacggtgtagagcatctgccgctgc 35690948

                                                   
Query: 285      ctgaaccgccgcatggcctcgcgcttccgcgccgt 319
                |||||||||||||| |||   ||||||| ||||||
Sbjct: 35690949 ctgaaccgccgcatcgccatccgcttcctcgccgt 35690983
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 128/155 (82%)
 Strand = Plus / Plus

                                                                            
Query: 165      accttggactctccccaccgctcgaacatctgccgctccgccgcgttcacctcgcactcc 224
                ||||||||||| |||||| ||  | |||||||||||||||||  ||| || |||||||||
Sbjct: 35780902 accttggactccccccactgccagtacatctgccgctccgccatgttgacgtcgcactcc 35780961

                                                                            
Query: 225      ggcagcgccgccgggtaccggtccgtgtcgtagcacaccgtgtacaccatctgcttccgc 284
                || | || | ||||||||| ||  |||||||||||||| ||||| | |||||||  | ||
Sbjct: 35780962 gggaacggctccgggtacctgttggtgtcgtagcacacggtgtagagcatctgccgctgc 35781021

                                                   
Query: 285      ctgaaccgccgcatggcctcgcgcttccgcgccgt 319
                |||||||||||||| |||   ||||||| ||||||
Sbjct: 35781022 ctgaaccgccgcatcgccatccgcttcctcgccgt 35781056
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>dbj|AK104577.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-A12, full
            insert sequence
          Length = 1326

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 128/155 (82%)
 Strand = Plus / Minus

                                                                        
Query: 165  accttggactctccccaccgctcgaacatctgccgctccgccgcgttcacctcgcactcc 224
            ||||||||||| |||||| ||  | |||||||||||||||||  ||| || |||||||||
Sbjct: 1054 accttggactccccccactgccagtacatctgccgctccgccatgttgacgtcgcactcc 995

                                                                        
Query: 225  ggcagcgccgccgggtaccggtccgtgtcgtagcacaccgtgtacaccatctgcttccgc 284
            || | || | ||||||||| ||  |||||||||||||| ||||| | |||||||  | ||
Sbjct: 994  gggaacggctccgggtacctgttggtgtcgtagcacacggtgtagagcatctgccgctgc 935

                                               
Query: 285  ctgaaccgccgcatggcctcgcgcttccgcgccgt 319
            |||||||||||||| |||   ||||||| ||||||
Sbjct: 934  ctgaaccgccgcatcgccatccgcttcctcgccgt 900
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>dbj|AK071886.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047H18, full
            insert sequence
          Length = 1359

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 128/155 (82%)
 Strand = Plus / Minus

                                                                        
Query: 165  accttggactctccccaccgctcgaacatctgccgctccgccgcgttcacctcgcactcc 224
            ||||||||||| |||||| ||  | |||||||||||||||||  ||| || |||||||||
Sbjct: 1107 accttggactccccccactgccagtacatctgccgctccgccatgttgacgtcgcactcc 1048

                                                                        
Query: 225  ggcagcgccgccgggtaccggtccgtgtcgtagcacaccgtgtacaccatctgcttccgc 284
            || | || | ||||||||| ||  |||||||||||||| ||||| | |||||||  | ||
Sbjct: 1047 gggaacggctccgggtacctgttggtgtcgtagcacacggtgtagagcatctgccgctgc 988

                                               
Query: 285  ctgaaccgccgcatggcctcgcgcttccgcgccgt 319
            |||||||||||||| |||   ||||||| ||||||
Sbjct: 987  ctgaaccgccgcatcgccatccgcttcctcgccgt 953
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>ref|XM_482634.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1857

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 130  gcggccgcggcggcgtcgtcc 150
            |||||||||||||||||||||
Sbjct: 1193 gcggccgcggcggcgtcgtcc 1213
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>ref|NM_008235.2| Mus musculus hairy and enhancer of split 1 (Drosophila) (Hes1),
           mRNA
          Length = 1487

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 120 atgggcacaagcggccgcggcggcg 144
           ||||||||||||||| |||||||||
Sbjct: 809 atgggcacaagcggcggcggcggcg 785
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>gb|BC051428.1| Mus musculus hairy and enhancer of split 1 (Drosophila), mRNA (cDNA
           clone MGC:58939 IMAGE:6478994), complete cds
          Length = 1527

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 120 atgggcacaagcggccgcggcggcg 144
           ||||||||||||||| |||||||||
Sbjct: 810 atgggcacaagcggcggcggcggcg 786
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>ref|NM_024360.2| Rattus norvegicus hairy and enhancer of split 1 (Drosophila) (Hes1),
            mRNA
          Length = 1609

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 120  atgggcacaagcggccgcggcggcg 144
            ||||||||||||||| |||||||||
Sbjct: 1335 atgggcacaagcggcggcggcggcg 1311
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>dbj|AK133538.1| Mus musculus 10 days neonate intestine cDNA, RIKEN full-length
           enriched library, clone:5133400H24 product:hairy and
           enhancer of split 1 (Drosophila), full insert sequence
          Length = 1466

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 120 atgggcacaagcggccgcggcggcg 144
           ||||||||||||||| |||||||||
Sbjct: 825 atgggcacaagcggcggcggcggcg 801
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>dbj|AK132536.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
           library, clone:4733401H22 product:Transcription factor
           HES-1 (Hairy and enhancer of split 1), full insert
           sequence
          Length = 1461

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 120 atgggcacaagcggccgcggcggcg 144
           ||||||||||||||| |||||||||
Sbjct: 820 atgggcacaagcggcggcggcggcg 796
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 130   gcggccgcggcggcgtcgtcc 150
             |||||||||||||||||||||
Sbjct: 32757 gcggccgcggcggcgtcgtcc 32777
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 130      gcggccgcggcggcgtcgtcc 150
                |||||||||||||||||||||
Sbjct: 21560583 gcggccgcggcggcgtcgtcc 21560603
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 134    ccgcggcggcgtcgtccggga 154
              |||||||||||||||||||||
Sbjct: 919717 ccgcggcggcgtcgtccggga 919697
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>gb|BC061730.1| Rattus norvegicus hairy and enhancer of split 1 (Drosophila), mRNA
           (cDNA clone MGC:72257 IMAGE:5598665), complete cds
          Length = 1436

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 120 atgggcacaagcggccgcggcggcg 144
           ||||||||||||||| |||||||||
Sbjct: 773 atgggcacaagcggcggcggcggcg 749
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>dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0708B04
          Length = 170523

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 130   gcggccgcggcggcgtcgtcc 150
             |||||||||||||||||||||
Sbjct: 20757 gcggccgcggcggcgtcgtcc 20777
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>dbj|AK106769.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-F07, full
            insert sequence
          Length = 1866

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 130  gcggccgcggcggcgtcgtcc 150
            |||||||||||||||||||||
Sbjct: 1202 gcggccgcggcggcgtcgtcc 1222
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>gb|BC018375.1| Mus musculus hairy and enhancer of split 1 (Drosophila), mRNA (cDNA
           clone MGC:25356 IMAGE:4505427), complete cds
          Length = 1487

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 120 atgggcacaagcggccgcggcggcg 144
           ||||||||||||||| |||||||||
Sbjct: 809 atgggcacaagcggcggcggcggcg 785
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>dbj|D16464.1|MUSHES1 Mus musculus gene for helix-loop-helix factor HES-1, complete cds
          Length = 2825

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 120  atgggcacaagcggccgcggcggcg 144
            ||||||||||||||| |||||||||
Sbjct: 2011 atgggcacaagcggcggcggcggcg 1987
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>emb|CT030736.8| Mouse DNA sequence from clone RP23-396K21 on chromosome 16, complete
              sequence
          Length = 181320

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 120    atgggcacaagcggccgcggcggcg 144
              ||||||||||||||| |||||||||
Sbjct: 136767 atgggcacaagcggcggcggcggcg 136743
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>gb|L04527.1|RATHAIRY Rattus norvegicus (clone pCDM8/rathairy 1) Drosophila hairy gene
            homologue, complete cds
          Length = 1609

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 120  atgggcacaagcggccgcggcggcg 144
            ||||||||||||||| |||||||||
Sbjct: 1335 atgggcacaagcggcggcggcggcg 1311
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>dbj|D13417.1|RATHES1A Rattus norvegicus mRNA for transcription factor HES-1
          Length = 1453

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 120 atgggcacaagcggccgcggcggcg 144
           ||||||||||||||| |||||||||
Sbjct: 811 atgggcacaagcggcggcggcggcg 787
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>ref|XM_507386.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0005G07.114
           mRNA
          Length = 1324

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 132 ggccgcggcggcgtcgtccgggagcgga 159
           |||||||||||||||||| || ||||||
Sbjct: 41  ggccgcggcggcgtcgtcgggtagcgga 14
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>ref|XM_478948.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1324

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 132 ggccgcggcggcgtcgtccgggagcgga 159
           |||||||||||||||||| || ||||||
Sbjct: 41  ggccgcggcggcgtcgtcgggtagcgga 14
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>ref|XM_506437.2| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0005G07.114
           mRNA
          Length = 1380

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 132 ggccgcggcggcgtcgtccgggagcgga 159
           |||||||||||||||||| || ||||||
Sbjct: 44  ggccgcggcggcgtcgtcgggtagcgga 17
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>gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B06,
             complete sequence
          Length = 139139

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 130   gcggccgcggcggcgtcgtccggg 153
             ||||| ||||||||||||||||||
Sbjct: 43871 gcggcggcggcggcgtcgtccggg 43894
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 128    aagcggccgcggcggcgtcg 147
              ||||||||||||||||||||
Sbjct: 102292 aagcggccgcggcggcgtcg 102273
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>gb|AC097469.2| Homo sapiens BAC clone RP11-55N4 from 4, complete sequence
          Length = 191883

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     actttacatgcagcaacatg 69
              ||||||||||||||||||||
Sbjct: 185156 actttacatgcagcaacatg 185137
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 132      ggccgcggcggcgtcgtccgggagcgga 159
                |||||||||||||||||| || ||||||
Sbjct: 23966843 ggccgcggcggcgtcgtcgggtagcgga 23966816
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 130      gcggccgcggcggcgtcgtccggg 153
                ||||| ||||||||||||||||||
Sbjct: 27679313 gcggcggcggcggcgtcgtccggg 27679336
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>gb|AC007388.4| Homo sapiens BAC clone RP11-395B14 from 2, complete sequence
          Length = 152155

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     aatcacttttgtacaactag 42
              ||||||||||||||||||||
Sbjct: 117950 aatcacttttgtacaactag 117969
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>dbj|AP005149.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBb0005G07
          Length = 142850

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 132    ggccgcggcggcgtcgtccgggagcgga 159
              |||||||||||||||||| || ||||||
Sbjct: 121770 ggccgcggcggcgtcgtcgggtagcgga 121743
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>dbj|AP003750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1174_G05
          Length = 111202

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 132  ggccgcggcggcgtcgtccgggagcgga 159
            |||||||||||||||||| || ||||||
Sbjct: 8451 ggccgcggcggcgtcgtcgggtagcgga 8424
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 130     gcggccgcggcggcgtcgtc 149
               ||||||||||||||||||||
Sbjct: 1407678 gcggccgcggcggcgtcgtc 1407659
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>dbj|AK122091.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124C04, full
           insert sequence
          Length = 2036

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 130 gcggccgcggcggcgtcgtccggg 153
           ||||| ||||||||||||||||||
Sbjct: 584 gcggcggcggcggcgtcgtccggg 607
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>dbj|AK104756.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-G05, full
           insert sequence
          Length = 1324

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 132 ggccgcggcggcgtcgtccgggagcgga 159
           |||||||||||||||||| || ||||||
Sbjct: 41  ggccgcggcggcgtcgtcgggtagcgga 14
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>dbj|AK104617.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-F09, full
           insert sequence
          Length = 1324

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 132 ggccgcggcggcgtcgtccgggagcgga 159
           |||||||||||||||||| || ||||||
Sbjct: 41  ggccgcggcggcgtcgtcgggtagcgga 14
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>dbj|AK072501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127G15, full
           insert sequence
          Length = 1380

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 132 ggccgcggcggcgtcgtccgggagcgga 159
           |||||||||||||||||| || ||||||
Sbjct: 44  ggccgcggcggcgtcgtcgggtagcgga 17
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>dbj|AK067862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124K11, full
           insert sequence
          Length = 1441

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 130 gcggccgcggcggcgtcgtccggg 153
           ||||| ||||||||||||||||||
Sbjct: 152 gcggcggcggcggcgtcgtccggg 175
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    ctccggcagcgccgccgggt 240
              ||||||||||||||||||||
Sbjct: 266027 ctccggcagcgccgccgggt 266046
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 134     ccgcggcggcgtcgtccggg 153
               ||||||||||||||||||||
Sbjct: 2415557 ccgcggcggcgtcgtccggg 2415576


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,853,492
Number of Sequences: 3902068
Number of extensions: 1853492
Number of successful extensions: 47070
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45775
Number of HSP's gapped (non-prelim): 1295
length of query: 319
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 297
effective length of database: 17,147,199,772
effective search space: 5092718332284
effective search space used: 5092718332284
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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