ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet31d07 |
|---|---|
| Clone Library Name | barley_pub |
>GMD2_ARATH (P93031) GDP-mannose 4,6 dehydratase 2 (EC 4.2.1.47) (GDP-D-mannose| dehydratase 2) (GMD 2) Length = 373 Score = 100 bits (250), Expect = 6e-22 Identities = 46/61 (75%), Positives = 56/61 (91%) Frame = -1 Query: 402 FRPSEVDCLQGDSSKSRRVLGWKPKVGFQQLVEMMVDNDIELAKKEKVLVDAGYRDPKQQ 223 FRP+EVD LQGD+SK++ VLGWKP+VGF++LV+MMVD D+ELAK+EKVLVDAGY D KQQ Sbjct: 313 FRPAEVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKREKVLVDAGYMDAKQQ 372 Query: 222 P 220 P Sbjct: 373 P 373
>GMD1_ARATH (Q9SNY3) GDP-mannose 4,6 dehydratase 1 (EC 4.2.1.47) (GDP-D-mannose| dehydratase 1) (GMD 1) Length = 361 Score = 96.7 bits (239), Expect = 1e-20 Identities = 43/61 (70%), Positives = 55/61 (90%) Frame = -1 Query: 402 FRPSEVDCLQGDSSKSRRVLGWKPKVGFQQLVEMMVDNDIELAKKEKVLVDAGYRDPKQQ 223 FRP+EVD L+GD+SK++ +LGWKPKVGF++LV+MMVD D+ELAK+EKVL DAGY D +QQ Sbjct: 301 FRPTEVDNLKGDASKAKEMLGWKPKVGFEKLVKMMVDEDLELAKREKVLADAGYMDAQQQ 360 Query: 222 P 220 P Sbjct: 361 P 361
>GM4D_SHIFL (P0AC91) GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (GDP-D-mannose| dehydratase) Length = 373 Score = 59.3 bits (142), Expect = 2e-09 Identities = 26/54 (48%), Positives = 37/54 (68%) Frame = -1 Query: 402 FRPSEVDCLQGDSSKSRRVLGWKPKVGFQQLVEMMVDNDIELAKKEKVLVDAGY 241 FRP+EV+ L GD +K+ LGWKP++ +++V MV ND+E AKK +L GY Sbjct: 312 FRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHSLLKSHGY 365
>GM4D_ECOLI (P0AC88) GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (GDP-D-mannose| dehydratase) Length = 373 Score = 59.3 bits (142), Expect = 2e-09 Identities = 26/54 (48%), Positives = 37/54 (68%) Frame = -1 Query: 402 FRPSEVDCLQGDSSKSRRVLGWKPKVGFQQLVEMMVDNDIELAKKEKVLVDAGY 241 FRP+EV+ L GD +K+ LGWKP++ +++V MV ND+E AKK +L GY Sbjct: 312 FRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHSLLKSHGY 365
>GM4D_ECOL6 (P0AC89) GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (GDP-D-mannose| dehydratase) Length = 373 Score = 59.3 bits (142), Expect = 2e-09 Identities = 26/54 (48%), Positives = 37/54 (68%) Frame = -1 Query: 402 FRPSEVDCLQGDSSKSRRVLGWKPKVGFQQLVEMMVDNDIELAKKEKVLVDAGY 241 FRP+EV+ L GD +K+ LGWKP++ +++V MV ND+E AKK +L GY Sbjct: 312 FRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHSLLKSHGY 365
>GM4D_ECO57 (P0AC90) GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (GDP-D-mannose| dehydratase) Length = 373 Score = 59.3 bits (142), Expect = 2e-09 Identities = 26/54 (48%), Positives = 37/54 (68%) Frame = -1 Query: 402 FRPSEVDCLQGDSSKSRRVLGWKPKVGFQQLVEMMVDNDIELAKKEKVLVDAGY 241 FRP+EV+ L GD +K+ LGWKP++ +++V MV ND+E AKK +L GY Sbjct: 312 FRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHSLLKSHGY 365
>GMDS_DROME (Q9VMW9) Probable GDP-mannose 4,6 dehydratase (EC 4.2.1.47)| (GDP-D-mannose dehydratase) (Dm-gmd) Length = 395 Score = 57.4 bits (137), Expect = 8e-09 Identities = 27/48 (56%), Positives = 34/48 (70%) Frame = -1 Query: 402 FRPSEVDCLQGDSSKSRRVLGWKPKVGFQQLVEMMVDNDIELAKKEKV 259 FRP+EVD LQGD+SK+ R L W PKV F +LV M+ DIEL +K + Sbjct: 347 FRPTEVDLLQGDASKANRELNWTPKVTFVELVSDMMKADIELMRKNPI 394
>GMDS_MOUSE (Q8K0C9) GDP-mannose 4,6 dehydratase (EC 4.2.1.47) (GDP-D-mannose| dehydratase) (GMD) Length = 372 Score = 55.5 bits (132), Expect = 3e-08 Identities = 24/44 (54%), Positives = 33/44 (75%) Frame = -1 Query: 402 FRPSEVDCLQGDSSKSRRVLGWKPKVGFQQLVEMMVDNDIELAK 271 +RP+EVD LQGD SK+++ L WKP+V F +LV MV D+EL + Sbjct: 324 YRPTEVDFLQGDCSKAQQKLNWKPRVAFDELVREMVQADVELMR 367
>GMDS_CRIGR (Q8K3X3) GDP-mannose 4,6 dehydratase (EC 4.2.1.47) (GDP-D-mannose| dehydratase) (GMD) Length = 372 Score = 55.5 bits (132), Expect = 3e-08 Identities = 24/44 (54%), Positives = 33/44 (75%) Frame = -1 Query: 402 FRPSEVDCLQGDSSKSRRVLGWKPKVGFQQLVEMMVDNDIELAK 271 +RP+EVD LQGD SK+++ L WKP+V F +LV MV D+EL + Sbjct: 324 YRPTEVDFLQGDCSKAQQKLNWKPRVAFDELVREMVQADVELMR 367
>GM4D_PSEAE (Q51366) GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (GDP-D-mannose| dehydratase) Length = 323 Score = 54.3 bits (129), Expect = 7e-08 Identities = 22/46 (47%), Positives = 33/46 (71%) Frame = -1 Query: 402 FRPSEVDCLQGDSSKSRRVLGWKPKVGFQQLVEMMVDNDIELAKKE 265 FRP+EVD L G+ +K++RVLGWKP+ +L+ MMV+ D+ +E Sbjct: 278 FRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRRVSRE 323
>GMDS_HUMAN (O60547) GDP-mannose 4,6 dehydratase (EC 4.2.1.47) (GDP-D-mannose| dehydratase) (GMD) Length = 372 Score = 54.3 bits (129), Expect = 7e-08 Identities = 23/44 (52%), Positives = 33/44 (75%) Frame = -1 Query: 402 FRPSEVDCLQGDSSKSRRVLGWKPKVGFQQLVEMMVDNDIELAK 271 +RP+EVD LQGD +K+++ L WKP+V F +LV MV D+EL + Sbjct: 324 YRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMR 367
>GM4D1_VIBCH (Q06952) Probable GDP-mannose 4,6-dehydratase (EC 4.2.1.47)| (GDP-D-mannose dehydratase) Length = 373 Score = 52.8 bits (125), Expect = 2e-07 Identities = 24/54 (44%), Positives = 36/54 (66%) Frame = -1 Query: 402 FRPSEVDCLQGDSSKSRRVLGWKPKVGFQQLVEMMVDNDIELAKKEKVLVDAGY 241 FRP+EV+ L GD S +++ LGW P++ QQ+V MV +D+E A+ +L GY Sbjct: 313 FRPAEVETLLGDPSLAKKELGWVPEITLQQMVSEMVASDLEQAQSHALLKKHGY 366
>GM4D_YEREN (Q56872) Probable GDP-mannose 4,6-dehydratase (EC 4.2.1.47)| (GDP-D-mannose dehydratase) (ORF13.7) Length = 372 Score = 48.9 bits (115), Expect = 3e-06 Identities = 21/54 (38%), Positives = 36/54 (66%) Frame = -1 Query: 402 FRPSEVDCLQGDSSKSRRVLGWKPKVGFQQLVEMMVDNDIELAKKEKVLVDAGY 241 FRP+EV+ L GD SK+++ LGW P++ +++ MV D++ AK+ +L G+ Sbjct: 311 FRPAEVETLLGDPSKAKKKLGWVPEITVEEMCAEMVAGDLQQAKQHALLKANGF 364
>GM4D2_VIBCH (Q56598) Probable GDP-mannose 4,6-dehydratase (EC 4.2.1.47)| (GDP-D-mannose dehydratase) Length = 372 Score = 48.9 bits (115), Expect = 3e-06 Identities = 22/57 (38%), Positives = 38/57 (66%) Frame = -1 Query: 402 FRPSEVDCLQGDSSKSRRVLGWKPKVGFQQLVEMMVDNDIELAKKEKVLVDAGYRDP 232 FRP+EV+ L GD SK+++ LGW P++ Q++ MV D+++A++ +L G+ P Sbjct: 312 FRPAEVETLLGDPSKAKQKLGWTPEITVQEMCAEMVMEDLKVAQRHALLKLHGHDVP 368
>GMD2_CAEEL (O45583) Probable GDP-mannose 4,6 dehydratase 2 (EC 4.2.1.47)| (GDP-D-mannose dehydratase) (GMD) Length = 382 Score = 47.8 bits (112), Expect = 6e-06 Identities = 20/46 (43%), Positives = 34/46 (73%) Frame = -1 Query: 402 FRPSEVDCLQGDSSKSRRVLGWKPKVGFQQLVEMMVDNDIELAKKE 265 +RP+EV+ L G+ +K+R+ LGW+PK+ +LV+ MV +DI L + + Sbjct: 334 YRPTEVETLLGNPAKARKTLGWEPKITVPELVKEMVASDIALMEAD 379
>GMD1_CAEEL (Q18801) Probable GDP-mannose 4,6 dehydratase 1 (EC 4.2.1.47)| (GDP-D-mannose dehydratase) (GMD) Length = 399 Score = 44.7 bits (104), Expect = 5e-05 Identities = 20/44 (45%), Positives = 32/44 (72%) Frame = -1 Query: 402 FRPSEVDCLQGDSSKSRRVLGWKPKVGFQQLVEMMVDNDIELAK 271 +RP+EV+ L G++ K+++ LGW+ KV +LV+ MV +DI L K Sbjct: 351 YRPTEVETLLGNAEKAKKTLGWEAKVTVPELVKEMVASDIILMK 394
>NOEL_RHISN (P55354) GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (GDP-D-mannose| dehydratase) Length = 351 Score = 43.1 bits (100), Expect = 2e-04 Identities = 19/40 (47%), Positives = 28/40 (70%) Frame = -1 Query: 402 FRPSEVDCLQGDSSKSRRVLGWKPKVGFQQLVEMMVDNDI 283 FRP+EVD L GD++K+R+VLGW+ + + L MV D+ Sbjct: 304 FRPTEVDLLLGDATKARQVLGWRHETSVRDLACEMVREDL 343
>NOEL_RHIFR (O85713) GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (GDP-D-mannose| dehydratase) Length = 351 Score = 43.1 bits (100), Expect = 2e-04 Identities = 19/40 (47%), Positives = 28/40 (70%) Frame = -1 Query: 402 FRPSEVDCLQGDSSKSRRVLGWKPKVGFQQLVEMMVDNDI 283 FRP+EVD L GD++K+R+VLGW+ + + L MV D+ Sbjct: 304 FRPTEVDLLLGDATKARQVLGWRHETSVRDLACEMVREDL 343
>GALE_LACHE (Q7WTB1) UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase)| (UDP-galactose 4-epimerase) Length = 330 Score = 32.7 bits (73), Expect = 0.21 Identities = 14/24 (58%), Positives = 17/24 (70%) Frame = -1 Query: 399 RPSEVDCLQGDSSKSRRVLGWKPK 328 R + D L DS+K+R VLGWKPK Sbjct: 282 RGGDPDSLVADSTKARTVLGWKPK 305
>GALE_STRTR (P21977) UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase)| (UDP-galactose 4-epimerase) Length = 332 Score = 31.6 bits (70), Expect = 0.47 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -1 Query: 399 RPSEVDCLQGDSSKSRRVLGWKPK 328 RP + D L S K+R VLGWKP+ Sbjct: 283 RPGDPDILIASSEKARTVLGWKPQ 306
>DSBD_NEIMB (Q9JYM0) Thiol:disulfide interchange protein dsbD precursor (EC| 1.8.1.8) (Protein-disulfide reductase) (Disulfide reductase) Length = 601 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +3 Query: 231 WGRGTQHPQGPSPSWRAQCRYQPSSQPAAGSQP 329 +G GT HPQ P+ QPSSQ +G+ P Sbjct: 137 FGNGTYHPQTDEPASAKDRFLQPSSQNGSGALP 169
>DSBD_NEIMA (Q9JTL9) Thiol:disulfide interchange protein dsbD precursor (EC| 1.8.1.8) (Protein-disulfide reductase) (Disulfide reductase) Length = 601 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = +3 Query: 234 GRGTQHPQGPSPSWRAQCRYQPSSQPAAGSQP 329 G GT HPQ P+ QPSSQ +G+ P Sbjct: 138 GNGTYHPQTDEPASAKDRFLQPSSQNGSGALP 169
>ZO1_MOUSE (P39447) Tight junction protein ZO-1 (Zonula occludens 1 protein)| (Zona occludens 1 protein) (Tight junction protein 1) Length = 1745 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/31 (32%), Positives = 20/31 (64%) Frame = +3 Query: 246 QHPQGPSPSWRAQCRYQPSSQPAAGSQPWAS 338 +H + P+P++ RY+P +QP + + P +S Sbjct: 1155 RHEEQPAPAYEVHNRYRPEAQPYSSTGPKSS 1185
>GRIN2_HUMAN (O60269) G protein-regulated inducer of neurite outgrowth 2 (GRIN2)| Length = 458 Score = 28.9 bits (63), Expect = 3.1 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 6/86 (6%) Frame = +3 Query: 120 LEPTSTAMATLYQLLGGQIQTRLHFNQTIDTDSMAAAWGRGTQHPQGPSP------SWRA 281 L+P S + ++L LG + R +T + A G + PQ P S + Sbjct: 18 LQPLSQSSSSL---LGEGREQRPELRKTASSTVWQAQLGEASTRPQAPEEEGNPPESMKP 74 Query: 282 QCRYQPSSQPAAGSQPWASTQALSST 359 P ++P+AG W+ST ST Sbjct: 75 ARASGPKARPSAGGHWWSSTVGNVST 100
>GALE_STRMU (P96995) UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase)| (UDP-galactose 4-epimerase) Length = 333 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -1 Query: 399 RPSEVDCLQGDSSKSRRVLGWKPK 328 R + D L S K+R VLGWKP+ Sbjct: 284 RSGDPDTLIASSEKAREVLGWKPQ 307
>AMPM_MYCTU (P0A5J2) Methionine aminopeptidase (EC 3.4.11.18) (MAP) (Peptidase| M) Length = 285 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/34 (35%), Positives = 15/34 (44%) Frame = +3 Query: 240 GTQHPQGPSPSWRAQCRYQPSSQPAAGSQPWAST 341 G P P P+W A+ Y GS+PW T Sbjct: 10 GVLSPTRPVPNWIARPEYVGKPAAQEGSEPWVQT 43
>AMPM_MYCBO (P0A5J3) Methionine aminopeptidase (EC 3.4.11.18) (MAP) (Peptidase| M) Length = 285 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/34 (35%), Positives = 15/34 (44%) Frame = +3 Query: 240 GTQHPQGPSPSWRAQCRYQPSSQPAAGSQPWAST 341 G P P P+W A+ Y GS+PW T Sbjct: 10 GVLSPTRPVPNWIARPEYVGKPAAQEGSEPWVQT 43
>IASPP_MOUSE (Q5I1X5) RelA-associated inhibitor (Inhibitor of ASPP protein)| (Protein iASPP) (PPP1R13B-like protein) (NFkB-interacting protein 1) Length = 824 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +3 Query: 261 PSPSWRAQCRYQPSSQPAAGSQPWASTQALSSTWMNLPEG 380 P P + Q + QP QP + +QP T A TW + EG Sbjct: 411 PQPQMQPQPQPQPQMQPQSQAQP--QTPAPQQTWSPMNEG 448
>X3CL1_HUMAN (P78423) Fractalkine precursor (CX3CL1) (Neurotactin) (CX3C| membrane-anchored chemokine) (Small inducible cytokine D1) Length = 397 Score = 28.9 bits (63), Expect = 3.1 Identities = 23/79 (29%), Positives = 32/79 (40%) Frame = +3 Query: 165 GGQIQTRLHFNQTIDTDSMAAAWGRGTQHPQGPSPSWRAQCRYQPSSQPAAGSQPWASTQ 344 GG + T L + T AA W H GPS A+ PS+Q + AS+ Sbjct: 178 GGPVGTELFRVPPVST---AATWQSSAPHQPGPSLWAEAKTSEAPSTQDPSTQASTASSP 234 Query: 345 ALSSTWMNLPEGSPPRKGE 401 A PE + P +G+ Sbjct: 235 A--------PEENAPSEGQ 245
>GALE_NEIGO (Q05026) UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase)| (UDP-galactose 4-epimerase) Length = 338 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = -1 Query: 399 RPSEVDCLQGDSSKSRRVLGWKPKVGFQQLVE 304 R ++ C D S +++ GW+ K G QQ++E Sbjct: 292 RAGDLACSYADPSHTKQQTGWETKRGLQQMME 323
>MMP9_RABIT (P41246) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)| (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase) (Gelatinase B) (GELB) Length = 707 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%) Frame = +3 Query: 237 RGTQHPQGPSPSWRAQCRYQPSSQPAA---GSQPWASTQALSSTWMNLPEGSP 386 RG QH GP+P+ + P QP A W +T S P G+P Sbjct: 437 RGIQHLYGPNPNPQPPATTTPEPQPTAPPTACPTWPATVRPSEHPTTSPTGAP 489
>ARI1A_HUMAN (O14497) AT-rich interactive domain-containing protein 1A (ARID| domain-containing protein 1A) (SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1) (SWI-SNF complex protein p270) (B120) (SWI-like pr Length = 2285 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/46 (26%), Positives = 20/46 (43%) Frame = +3 Query: 255 QGPSPSWRAQCRYQPSSQPAAGSQPWASTQALSSTWMNLPEGSPPR 392 QG +P + Q + QP QP + T ++ P+ PP+ Sbjct: 465 QGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQ 510
>EMBB_MYCSM (Q50395) Probable arabinosyltransferase B (EC 2.4.2.-)| Length = 1082 Score = 28.5 bits (62), Expect = 4.0 Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 7/88 (7%) Frame = +3 Query: 159 LLGGQIQTRLHFNQTIDT-------DSMAAAWGRGTQHPQGPSPSWRAQCRYQPSSQPAA 317 + G + L QT+D D GR T + GP+PSWR RY S P Sbjct: 868 ITGESVANGLTTGQTVDLEYATRGPDGTLVPAGRVTPYDVGPTPSWR-NLRYPRSEIPDD 926 Query: 318 GSQPWASTQALSSTWMNLPEGSPPRKGE 401 + LS + + +PPR E Sbjct: 927 AVAVRVVAEDLSLSQGDWIAVTPPRVPE 954
>NUPL2_XENTR (Q5FVW4) Nucleoporin-like 2| Length = 449 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 9/56 (16%) Frame = +3 Query: 246 QHPQGPSPSWRAQCRYQPSSQPAAGSQPWASTQ---------ALSSTWMNLPEGSP 386 +HP+G S +++Q RYQ A G+ W S+ + S+TW+N P Sbjct: 21 EHPRGGSSRYQSQNRYQEPPGNAKGT--WGSSSQRYVQPSSFSRSTTWVNRDNEKP 74
>APRR2_ARATH (Q6LA43) Two-component response regulator-like APRR2| (Pseudo-response regulator 2) (TOC2 protein) Length = 535 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/54 (29%), Positives = 23/54 (42%) Frame = +3 Query: 240 GTQHPQGPSPSWRAQCRYQPSSQPAAGSQPWASTQALSSTWMNLPEGSPPRKGE 401 G Q+P G ++ P+SQP +A+S W+ LP G P E Sbjct: 458 GFQYPNGAETGFKIM----PASQPDEEMLDQVVKEAISKPWLPLPLGLKPPSAE 507
>GALE_BACSU (P55180) UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase)| (UDP-galactose 4-epimerase) Length = 339 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/30 (33%), Positives = 19/30 (63%) Frame = -1 Query: 399 RPSEVDCLQGDSSKSRRVLGWKPKVGFQQL 310 RP ++ D +K++R LGW+ K G +++ Sbjct: 291 RPGDIATCFADPAKAKRELGWEAKRGLEEM 320
>ILVI_BUCBP (Q89AP7) Acetolactate synthase large subunit (EC 2.2.1.6) (AHAS)| (Acetohydroxy-acid synthase large subunit) (ALS) Length = 576 Score = 28.1 bits (61), Expect = 5.2 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 1/93 (1%) Frame = +1 Query: 82 KPPYFYPETXXXXXXXXXXXWPHCISF*GGKSKPGSILIKLSIPTLWLLLGVAVPSIHKD 261 K PY +P+ P G K ILIK P +++ G+ + HK+ Sbjct: 171 KKPYIWPKLISIRSYS-----PVLQGHQGQIKKALHILIKAKQPIIYIGGGIITSNSHKE 225 Query: 262 LLLLGE-LNVVINHHLNQLLEANLGLPPKHSPR 357 L LL E LN+ + L LG P++ P+ Sbjct: 226 LKLLAETLNIPVTTSL-----MALGALPQNHPQ 253
>RNFA_HAEIN (P71395) Electron transport complex protein rnfA| Length = 192 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Frame = +1 Query: 196 IKLSIPTLWLLLGVAVPSIHKDLLLLGE--LNVVINHHLNQLLEANLG 333 I + PTL+ LLG+ +P I + +LG LNV + H+L + + G Sbjct: 92 INKTSPTLYRLLGIFLPLITTNCAVLGVALLNVNLAHNLTESVVYGFG 139
>RMLB_STRMU (P95780) dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)| Length = 348 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%) Frame = -1 Query: 369 DSSKSRRVLGWKPKV-----GFQQLVEMMVDNDIELAKKEKVLVDAGY 241 DS+K R LGWKP+ G + ++ +++ + K EK V+A Y Sbjct: 294 DSTKLREELGWKPQFTNFEEGLEDTIKWYTEHE-DWWKAEKEAVEANY 340
>ICP34_HHV1N (P37319) Infected cell protein ICP34.5 (Neurovirulence factor| ICP34.5) Length = 245 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%) Frame = +3 Query: 252 PQGPSPSWRAQCRYQPSSQPAAGSQPWA-----STQALSSTWMNLPEGS 383 P G P+ ++Q P+S+P S P A S L W+++PE + Sbjct: 19 PTGAVPTAQSQVTSTPNSEPVVRSAPAAGGPPPSCSLLLRQWLHVPESA 67
>GALE1_CYATE (O65780) UDP-glucose 4-epimerase GEPI42 (EC 5.1.3.2)| (Galactowaldenase) (UDP-galactose 4-epimerase) Length = 354 Score = 27.7 bits (60), Expect = 6.8 Identities = 9/30 (30%), Positives = 17/30 (56%) Frame = -1 Query: 399 RPSEVDCLQGDSSKSRRVLGWKPKVGFQQL 310 RP + + + K+ + LGWK K G +++ Sbjct: 306 RPGDATAVYASTEKAEKELGWKAKYGVEEM 335
>FUBP2_HUMAN (Q92945) Far upstream element-binding protein 2 (FUSE-binding| protein 2) (KH type splicing regulatory protein) (KSRP) (p75) Length = 707 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 13/63 (20%) Frame = +3 Query: 252 PQG---PSPSWRAQCRYQPSSQPAAGSQPWASTQALSSTWMNLPEG----------SPPR 392 PQG P W+ + PS AA + P A+ A S + P G +PP Sbjct: 542 PQGWGNTYPQWQPPAPHDPSKAAAAAADPNAAWAAYYSHYYQQPPGPVPGPAPAPAAPPA 601 Query: 393 KGE 401 +GE Sbjct: 602 QGE 604
>SYK_METKA (Q8TWP6) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 555 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +1 Query: 166 GGKSKPGSILIKLSIPTLWLLLGVAVPSIHKDLLLLG 276 G + PG + K+ PT W+ LGVA KD + G Sbjct: 232 GFEIPPGKLGWKIEWPTRWVYLGVACEPFGKDHYVAG 268
>R1B11_SOLDE (Q6L3Y2) Putative late blight resistance protein homolog R1B-11| Length = 1252 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/31 (32%), Positives = 18/31 (58%) Frame = +3 Query: 273 WRAQCRYQPSSQPAAGSQPWASTQALSSTWM 365 W++QC S P +G Q W T+++ S ++ Sbjct: 5 WKSQCTRILSISPDSGIQYWKKTESMKSQYL 35
>DHH1_CRYNE (Q5KJI2) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)| Length = 625 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/54 (35%), Positives = 24/54 (44%) Frame = +3 Query: 228 AWGRGTQHPQGPSPSWRAQCRYQPSSQPAAGSQPWASTQALSSTWMNLPEGSPP 389 A+G+G PQ A + QP+S PA P S QA + P SPP Sbjct: 487 AYGQGPPQPQ-------ALFQQQPNSSPAPAPLPSYSQQAPTQAQGPAPVQSPP 533
>UL47_EHV1B (P28929) 97 kDa alpha trans-inducing protein (Tegument protein)| (GP10) Length = 871 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = +3 Query: 207 DTDSMAAAWGRGTQHPQGPSPSW 275 D DS +W R +HP +PSW Sbjct: 298 DPDSAYQSWVRAIRHPLAMNPSW 320
>DEND_HUMAN (O94850) Dendrin| Length = 657 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/56 (26%), Positives = 23/56 (41%) Frame = +3 Query: 234 GRGTQHPQGPSPSWRAQCRYQPSSQPAAGSQPWASTQALSSTWMNLPEGSPPRKGE 401 G T P P P+ R++ + S + G Q W W+ P+ PPR + Sbjct: 295 GSATAAPCAPHPAPRSRHHLKGSREGKEGEQIW-----FPKCWIPSPKKQPPRHSQ 345
>PGCA_RAT (P07897) Aggrecan core protein precursor (Cartilage-specific| proteoglycan core protein) (CSPCP) Length = 2124 Score = 27.3 bits (59), Expect = 8.9 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 7/70 (10%) Frame = +3 Query: 195 NQTIDTDSMAAAWGRGTQHPQ-------GPSPSWRAQCRYQPSSQPAAGSQPWASTQALS 353 N T+ T + W + TQHP P+PS+ + +Q A ++ T L+ Sbjct: 1842 NVTVSTTVPESRWAQSTQHPTETLQEIGSPNPSYSGE-----ETQTAETAKSLTDTPTLA 1896 Query: 354 STWMNLPEGS 383 S PEGS Sbjct: 1897 S-----PEGS 1901
>GALE2_CYATE (O65781) UDP-glucose 4-epimerase GEPI48 (EC 5.1.3.2)| (Galactowaldenase) (UDP-galactose 4-epimerase) Length = 350 Score = 27.3 bits (59), Expect = 8.9 Identities = 9/30 (30%), Positives = 17/30 (56%) Frame = -1 Query: 399 RPSEVDCLQGDSSKSRRVLGWKPKVGFQQL 310 RP + + + ++K+ R L WK K G ++ Sbjct: 298 RPGDAEVVYASTNKAERELNWKAKYGIDEM 327
>RNFA_YERPE (Q8ZEC8) Electron transport complex protein rnfA| Length = 193 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%) Frame = +1 Query: 190 ILIKLSIPTLWLLLGVAVPSIHKDLLLLGE--LNVVINHHLNQ 312 ++++ + PTL+ LLG+ +P I + +LG LNV +H+ Q Sbjct: 90 LVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNVNQSHNFMQ 132
>RNFA_VIBCH (Q9KT86) Electron transport complex protein rnfA| Length = 193 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Frame = +1 Query: 190 ILIKLSIPTLWLLLGVAVPSIHKDLLLLGE--LNVVINHHLNQLLEANLG 333 +++ + PTL+ LLG+ +P I + +LG LN+ NH+ Q + G Sbjct: 90 MVVHKTSPTLYRLLGIFLPLITTNCAVLGVALLNINENHNFIQSIIYGFG 139
>NMDE3_HUMAN (Q14957) Glutamate [NMDA] receptor subunit epsilon 3 precursor| (N-methyl D-aspartate receptor subtype 2C) (NR2C) (NMDAR2C) Length = 1233 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +3 Query: 225 AAWGRGTQHPQGPSPSWRAQCRYQPSSQPAAGSQP 329 AAW RG++ PS A+ +PSS PA + P Sbjct: 1069 AAWARGSRPRHASLPSSVAEAFARPSSLPAGCTGP 1103
>MK07_HUMAN (Q13164) Mitogen-activated protein kinase 7 (EC 2.7.11.24)| (Extracellular signal-regulated kinase 5) (ERK-5) (ERK4) (BMK1 kinase) Length = 815 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 7/45 (15%) Frame = +3 Query: 276 RAQCRYQPSSQPAAGSQPWASTQALSSTW-------MNLPEGSPP 389 R Q R+QPS QP A S+P + S W M P +PP Sbjct: 395 RQQIRFQPSLQPVA-SEPGCPDVEMPSPWAPSGDCAMESPPPAPP 438
>ARNA_YERPS (Q93PD8) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 667 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = -1 Query: 357 SRRVLGWKPKVGFQQLVEMMVDNDIELAKKEK 262 +RR+L W+P++ QQ V +D + A EK Sbjct: 626 ARRILHWQPEIAMQQTVTETLDFFLRAAVIEK 657
>ARNA_YERPE (Q8ZDX8) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 667 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = -1 Query: 357 SRRVLGWKPKVGFQQLVEMMVDNDIELAKKEK 262 +RR+L W+P++ QQ V +D + A EK Sbjct: 626 ARRILHWQPEIAMQQTVTETLDFFLRAAVIEK 657
>PRP2_MOUSE (P05142) Proline-rich protein MP-2 precursor| Length = 261 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/49 (34%), Positives = 18/49 (36%) Frame = +3 Query: 252 PQGPSPSWRAQCRYQPSSQPAAGSQPWASTQALSSTWMNLPEGSPPRKG 398 PQGP P Q R P AG QP P+G PP G Sbjct: 133 PQGPPPPGGPQLRPPQGPPPPAGPQP------------RPPQGPPPPAG 169
>BSN_MOUSE (O88737) Bassoon protein| Length = 3941 Score = 27.3 bits (59), Expect = 8.9 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 6/59 (10%) Frame = +3 Query: 234 GRGTQHPQGPSPSWRAQCRYQPSSQPA------AGSQPWASTQALSSTWMNLPEGSPPR 392 G G Q PQ +PS Q R QP SQP A SQP Q +T PPR Sbjct: 3798 GLGQQAPQ-QAPS---QARLQPQSQPTTRGTAPAASQPAGKPQPGPTTAPGPQPAGPPR 3852
>RFBB_XANCP (P55295) dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)| Length = 351 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = -1 Query: 369 DSSKSRRVLGWKPKVGFQQLVEMMVDNDIELAKKEKVLVDAGYR 238 D+SK + LGW+P F+Q + VD + + ++D YR Sbjct: 300 DASKLKDELGWEPAYTFEQGIAQTVDWYLTNQTWVQGVLDGSYR 343
>CHSA_EMENI (P30584) Chitin synthase A (EC 2.4.1.16) (Chitin-UDP| acetyl-glucosaminyl transferase A) (Class-II chitin synthase A) Length = 1013 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/59 (30%), Positives = 31/59 (52%) Frame = +3 Query: 207 DTDSMAAAWGRGTQHPQGPSPSWRAQCRYQPSSQPAAGSQPWASTQALSSTWMNLPEGS 383 +T S AA R P+ S + RY +S+PA+ ++PW+ T+A + W+ P + Sbjct: 35 ETLSRAAPSMRNAPTIPPPTASGADEMRYT-ASRPASPARPWSPTRA--ADWVRPPSAA 90
>ITIH2_MOUSE (Q61703) Inter-alpha-trypsin inhibitor heavy chain H2 precursor| (ITI heavy chain H2) (Inter-alpha-inhibitor heavy chain 2) Length = 946 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/49 (34%), Positives = 22/49 (44%) Frame = +3 Query: 240 GTQHPQGPSPSWRAQCRYQPSSQPAAGSQPWASTQALSSTWMNLPEGSP 386 GT+ GP PSW S+ A G++P ST T +N E P Sbjct: 658 GTKVASGPIPSWANPSPTPMSAMLAVGAKPLEST---PPTHLNQVENDP 703 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,825,623 Number of Sequences: 219361 Number of extensions: 1255978 Number of successful extensions: 4059 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 3868 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4048 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
