ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet31c10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 95.6 bits (48), Expect = 9e-17 Identities = 107/127 (84%), Gaps = 6/127 (4%) Strand = Plus / Plus Query: 139 actccaaccaggtaaccaaactaatctaacgagaaccagtgctagaacttgatgagcgga 198 ||||||||||| | |||| |||||||||||||| |||||| |||||||| |||| Sbjct: 13173830 actccaaccagattaccaggctaatctaacgaga------gctagagcttgatgatcgga 13173883 Query: 199 aagaccataggaaagagaacggattccttcttctctgacgcccaccggttctcccactgc 258 ||| ||||||||| ||||||||||||||||| || ||||| ||| |||||||||| ||| Sbjct: 13173884 aaggccataggaacgagaacggattccttctcctttgacgtccattggttctcccattgc 13173943 Query: 259 tacttga 265 ||||||| Sbjct: 13173944 tacttga 13173950 Score = 87.7 bits (44), Expect = 2e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 283 tttggttagttgatcttgagcgtgagcagctggcaccactagagctctgtgttggcaact 342 ||||||| |||||||||| ||| |||||||| |||||| |||||||||||| |||||||| Sbjct: 13173959 tttggttggttgatcttgtgcgcgagcagctagcaccagtagagctctgtggtggcaact 13174018 Query: 343 cgtatcggcaagcagg 358 | ||||||||| |||| Sbjct: 13174019 catatcggcaaacagg 13174034
>gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1113A07, from chromosome 3, complete sequence Length = 151173 Score = 95.6 bits (48), Expect = 9e-17 Identities = 107/127 (84%), Gaps = 6/127 (4%) Strand = Plus / Minus Query: 139 actccaaccaggtaaccaaactaatctaacgagaaccagtgctagaacttgatgagcgga 198 ||||||||||| | |||| |||||||||||||| |||||| |||||||| |||| Sbjct: 52808 actccaaccagattaccaggctaatctaacgaga------gctagagcttgatgatcgga 52755 Query: 199 aagaccataggaaagagaacggattccttcttctctgacgcccaccggttctcccactgc 258 ||| ||||||||| ||||||||||||||||| || ||||| ||| |||||||||| ||| Sbjct: 52754 aaggccataggaacgagaacggattccttctcctttgacgtccattggttctcccattgc 52695 Query: 259 tacttga 265 ||||||| Sbjct: 52694 tacttga 52688 Score = 87.7 bits (44), Expect = 2e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 283 tttggttagttgatcttgagcgtgagcagctggcaccactagagctctgtgttggcaact 342 ||||||| |||||||||| ||| |||||||| |||||| |||||||||||| |||||||| Sbjct: 52679 tttggttggttgatcttgtgcgcgagcagctagcaccagtagagctctgtggtggcaact 52620 Query: 343 cgtatcggcaagcagg 358 | ||||||||| |||| Sbjct: 52619 catatcggcaaacagg 52604
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 95.6 bits (48), Expect = 9e-17 Identities = 107/127 (84%), Gaps = 6/127 (4%) Strand = Plus / Plus Query: 139 actccaaccaggtaaccaaactaatctaacgagaaccagtgctagaacttgatgagcgga 198 ||||||||||| | |||| |||||||||||||| |||||| |||||||| |||| Sbjct: 13170605 actccaaccagattaccaggctaatctaacgaga------gctagagcttgatgatcgga 13170658 Query: 199 aagaccataggaaagagaacggattccttcttctctgacgcccaccggttctcccactgc 258 ||| ||||||||| ||||||||||||||||| || ||||| ||| |||||||||| ||| Sbjct: 13170659 aaggccataggaacgagaacggattccttctcctttgacgtccattggttctcccattgc 13170718 Query: 259 tacttga 265 ||||||| Sbjct: 13170719 tacttga 13170725 Score = 87.7 bits (44), Expect = 2e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 283 tttggttagttgatcttgagcgtgagcagctggcaccactagagctctgtgttggcaact 342 ||||||| |||||||||| ||| |||||||| |||||| |||||||||||| |||||||| Sbjct: 13170734 tttggttggttgatcttgtgcgcgagcagctagcaccagtagagctctgtggtggcaact 13170793 Query: 343 cgtatcggcaagcagg 358 | ||||||||| |||| Sbjct: 13170794 catatcggcaaacagg 13170809
>dbj|AK070491.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049J20, full insert sequence Length = 1231 Score = 95.6 bits (48), Expect = 9e-17 Identities = 107/127 (84%), Gaps = 6/127 (4%) Strand = Plus / Minus Query: 139 actccaaccaggtaaccaaactaatctaacgagaaccagtgctagaacttgatgagcgga 198 ||||||||||| | |||| |||||||||||||| |||||| |||||||| |||| Sbjct: 1075 actccaaccagattaccaggctaatctaacgaga------gctagagcttgatgatcgga 1022 Query: 199 aagaccataggaaagagaacggattccttcttctctgacgcccaccggttctcccactgc 258 ||| ||||||||| ||||||||||||||||| || ||||| ||| |||||||||| ||| Sbjct: 1021 aaggccataggaacgagaacggattccttctcctttgacgtccattggttctcccattgc 962 Query: 259 tacttga 265 ||||||| Sbjct: 961 tacttga 955 Score = 87.7 bits (44), Expect = 2e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 283 tttggttagttgatcttgagcgtgagcagctggcaccactagagctctgtgttggcaact 342 ||||||| |||||||||| ||| |||||||| |||||| |||||||||||| |||||||| Sbjct: 946 tttggttggttgatcttgtgcgcgagcagctagcaccagtagagctctgtggtggcaact 887 Query: 343 cgtatcggcaagcagg 358 | ||||||||| |||| Sbjct: 886 catatcggcaaacagg 871
>gb|AC136284.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1739D07, from chromosome 3, complete sequence Length = 149539 Score = 95.6 bits (48), Expect = 9e-17 Identities = 107/127 (84%), Gaps = 6/127 (4%) Strand = Plus / Minus Query: 139 actccaaccaggtaaccaaactaatctaacgagaaccagtgctagaacttgatgagcgga 198 ||||||||||| | |||| |||||||||||||| |||||| |||||||| |||| Sbjct: 146011 actccaaccagattaccaggctaatctaacgaga------gctagagcttgatgatcgga 145958 Query: 199 aagaccataggaaagagaacggattccttcttctctgacgcccaccggttctcccactgc 258 ||| ||||||||| ||||||||||||||||| || ||||| ||| |||||||||| ||| Sbjct: 145957 aaggccataggaacgagaacggattccttctcctttgacgtccattggttctcccattgc 145898 Query: 259 tacttga 265 ||||||| Sbjct: 145897 tacttga 145891 Score = 87.7 bits (44), Expect = 2e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 283 tttggttagttgatcttgagcgtgagcagctggcaccactagagctctgtgttggcaact 342 ||||||| |||||||||| ||| |||||||| |||||| |||||||||||| |||||||| Sbjct: 145882 tttggttggttgatcttgtgcgcgagcagctagcaccagtagagctctgtggtggcaact 145823 Query: 343 cgtatcggcaagcagg 358 | ||||||||| |||| Sbjct: 145822 catatcggcaaacagg 145807
>gb|AE006451.1| Lactococcus lactis subsp. lactis IL1403 section 213 of 218 of the complete genome Length = 11070 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 256 tgctacttgagctgcttgaatt 277 |||||||||||||||||||||| Sbjct: 10104 tgctacttgagctgcttgaatt 10125
>emb|CR378678.1| Photobacterium profundum SS9 chromosome 2; segment 4/7 Length = 349527 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 56 aagccatacattacatattga 76 ||||||||||||||||||||| Sbjct: 238516 aagccatacattacatattga 238536
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 283 tttggttagttgatcttgagc 303 ||||||||||||||||||||| Sbjct: 19519984 tttggttagttgatcttgagc 19520004
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 283 tttggttagttgatcttgagc 303 ||||||||||||||||||||| Sbjct: 19446197 tttggttagttgatcttgagc 19446217
>emb|AL731759.2|CNS07YPA Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144596 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 283 tttggttagttgatcttgagc 303 ||||||||||||||||||||| Sbjct: 52165 tttggttagttgatcttgagc 52185
>gb|AC166060.2| Mus musculus BAC clone RP23-185O8 from chromosome 9, complete sequence Length = 198365 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 caccactagagctctgtgtt 335 |||||||||||||||||||| Sbjct: 133554 caccactagagctctgtgtt 133573
>gb|AY335551.1| Pan troglodytes chromosome 3q pericentric inversion breakpoint region, complete sequence Length = 4289 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 35 ccattttgtggccactataacaag 58 ||||| |||||||||||||||||| Sbjct: 2770 ccattctgtggccactataacaag 2793
>gb|AC132451.3| Mus musculus BAC clone RP23-194C20 from chromosome 8, complete sequence Length = 188539 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 ccatacattacatattgatt 78 |||||||||||||||||||| Sbjct: 53562 ccatacattacatattgatt 53581
>emb|AL138819.9| Human DNA sequence from clone RP11-366O17 on chromosome 13 Contains part of a novel gene and part of a gene similar to MEST (mesoderm specific transcript (mouse) homolog), complete sequence Length = 86254 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 cattgtgaactccaaccagg 150 |||||||||||||||||||| Sbjct: 83472 cattgtgaactccaaccagg 83453
>gb|AC182430.2| Pan troglodytes BAC clone CH251-398I16 from chromosome 4, complete sequence Length = 145600 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 35 ccattttgtggccactataacaag 58 ||||| |||||||||||||||||| Sbjct: 77253 ccattctgtggccactataacaag 77276
>gb|AC108021.3| Homo sapiens BAC clone RP11-8N8 from 4, complete sequence Length = 185972 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 35 ccattttgtggccactataacaag 58 ||||| |||||||||||||||||| Sbjct: 146020 ccattctgtggccactataacaag 146043
>gb|AF296838.1|T29J13 Arabidopsis thaliana BAC T29J13 Length = 100592 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 268 tgcttgaattgtcattttggttag 291 |||||||| ||||||||||||||| Sbjct: 96550 tgcttgaaatgtcattttggttag 96573
>emb|BX119315.5| Zebrafish DNA sequence from clone CH211-215F22 in linkage group 9, complete sequence Length = 210930 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 taaaatagcattgtgaactc 142 |||||||||||||||||||| Sbjct: 186550 taaaatagcattgtgaactc 186569
>emb|AJ338759.1|HSA338759 Homo sapiens genomic sequence surrounding NotI site, clone NB1-077C Length = 925 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 209 gaaagagaacggattccttcttct 232 ||||||||| |||||||||||||| Sbjct: 213 gaaagagaagggattccttcttct 236
>emb|BX005039.11| Mouse DNA sequence from clone RP23-391M18 on chromosome 2, complete sequence Length = 145263 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 cactgctacttgagctgctt 272 |||||||||||||||||||| Sbjct: 66070 cactgctacttgagctgctt 66051 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,212,673 Number of Sequences: 3902068 Number of extensions: 3212673 Number of successful extensions: 59327 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59212 Number of HSP's gapped (non-prelim): 115 length of query: 358 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 336 effective length of database: 17,147,199,772 effective search space: 5761459123392 effective search space used: 5761459123392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
