ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaet31b03 |
|---|---|
| Clone Library Name | barley_pub |
>PORA_WHEAT (Q41578) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 143 bits (360), Expect = 2e-34 Identities = 71/71 (100%), Positives = 71/71 (100%) Frame = -1 Query: 448 QKFVTKGFVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKV 269 QKFVTKGFVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKV Sbjct: 318 QKFVTKGFVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKV 377 Query: 268 WELSEKLVGLA 236 WELSEKLVGLA Sbjct: 378 WELSEKLVGLA 388
>POR_AVESA (P15904) Protochlorophyllide reductase (EC 1.3.1.33) (PCR)| (NADPH-protochlorophyllide oxidoreductase) (POR) (Fragment) Length = 313 Score = 141 bits (356), Expect = 6e-34 Identities = 70/71 (98%), Positives = 70/71 (98%) Frame = -1 Query: 448 QKFVTKGFVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKV 269 QKFVTKGFVSEAESGKRLAQVV EPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKV Sbjct: 243 QKFVTKGFVSEAESGKRLAQVVGEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKV 302 Query: 268 WELSEKLVGLA 236 WELSEKLVGLA Sbjct: 303 WELSEKLVGLA 313
>PORA_HORVU (P13653) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 140 bits (354), Expect = 1e-33 Identities = 70/71 (98%), Positives = 70/71 (98%) Frame = -1 Query: 448 QKFVTKGFVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKV 269 QKFVTKGFVSEAESGKRLAQVVAEP LTKSGVYWSWNKDSASFENQLSQEASDPEKARKV Sbjct: 318 QKFVTKGFVSEAESGKRLAQVVAEPVLTKSGVYWSWNKDSASFENQLSQEASDPEKARKV 377 Query: 268 WELSEKLVGLA 236 WELSEKLVGLA Sbjct: 378 WELSEKLVGLA 388
>POR_DAUCA (Q9SDT1) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 133 bits (335), Expect = 2e-31 Identities = 64/71 (90%), Positives = 70/71 (98%) Frame = -1 Query: 448 QKFVTKGFVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKV 269 QK++TKG+VSEAESGKRLAQVV+EPSLTKSGVYWSWNKDSASFENQLS+EASD EKARKV Sbjct: 328 QKYITKGYVSEAESGKRLAQVVSEPSLTKSGVYWSWNKDSASFENQLSEEASDVEKARKV 387 Query: 268 WELSEKLVGLA 236 WE+SEKLVGLA Sbjct: 388 WEVSEKLVGLA 398
>PORA_CUCSA (Q41249) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 130 bits (327), Expect = 1e-30 Identities = 63/71 (88%), Positives = 69/71 (97%) Frame = -1 Query: 448 QKFVTKGFVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKV 269 QKF+T+G+VSE E+GKRLAQVV+EPSLTKSGVYWSWNK+SASFENQLSQEASD EKARKV Sbjct: 328 QKFITQGYVSEDEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSQEASDAEKARKV 387 Query: 268 WELSEKLVGLA 236 WELSEKLVGLA Sbjct: 388 WELSEKLVGLA 398
>PORB_HORVU (Q42850) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 395 Score = 130 bits (326), Expect = 2e-30 Identities = 62/71 (87%), Positives = 69/71 (97%) Frame = -1 Query: 448 QKFVTKGFVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKV 269 QK++TKG+VSE E+GKRLAQVV+EPSLTKSGVYWSWNK+SASFENQLS+EASD EKARKV Sbjct: 325 QKYITKGYVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKV 384 Query: 268 WELSEKLVGLA 236 WELSEKLVGLA Sbjct: 385 WELSEKLVGLA 395
>PORA_ARATH (Q42536) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 405 Score = 128 bits (322), Expect = 6e-30 Identities = 61/71 (85%), Positives = 69/71 (97%) Frame = -1 Query: 448 QKFVTKGFVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKV 269 QK++TKG+VSE+E+GKRLAQVVA+PSLTKSGVYWSWNK SASFENQLSQEASD EKAR+V Sbjct: 335 QKYITKGYVSESEAGKRLAQVVADPSLTKSGVYWSWNKTSASFENQLSQEASDVEKARRV 394 Query: 268 WELSEKLVGLA 236 WE+SEKLVGLA Sbjct: 395 WEVSEKLVGLA 405
>POR_PEA (Q01289) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 399 Score = 127 bits (318), Expect = 2e-29 Identities = 61/71 (85%), Positives = 67/71 (94%) Frame = -1 Query: 448 QKFVTKGFVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKV 269 QK++TKG+VSE ESGKRLAQVV++PSLTKSGVYWSWN SASFENQLSQEASD EKARKV Sbjct: 329 QKYITKGYVSEEESGKRLAQVVSDPSLTKSGVYWSWNNASASFENQLSQEASDAEKARKV 388 Query: 268 WELSEKLVGLA 236 WE+SEKLVGLA Sbjct: 389 WEVSEKLVGLA 399
>PORB_ARATH (P21218) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 401 Score = 126 bits (316), Expect = 3e-29 Identities = 60/71 (84%), Positives = 67/71 (94%) Frame = -1 Query: 448 QKFVTKGFVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKV 269 QK++TKG+VSE ESGKRLAQVV++PSLTKSGVYWSWN SASFENQLS+EASD EKARKV Sbjct: 331 QKYITKGYVSETESGKRLAQVVSDPSLTKSGVYWSWNNASASFENQLSEEASDVEKARKV 390 Query: 268 WELSEKLVGLA 236 WE+SEKLVGLA Sbjct: 391 WEISEKLVGLA 401
>PORC_ARATH (O48741) Protochlorophyllide reductase C, chloroplast precursor (EC| 1.3.1.33) (PCR C) (NADPH-protochlorophyllide oxidoreductase C) (POR C) Length = 401 Score = 119 bits (298), Expect = 3e-27 Identities = 55/71 (77%), Positives = 67/71 (94%) Frame = -1 Query: 448 QKFVTKGFVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKV 269 QK++TKG+VSE E+GKRLAQVV++PSL KSGVYWSWN +S+SFENQLS+EASD EKA+K+ Sbjct: 331 QKYITKGYVSEEEAGKRLAQVVSDPSLGKSGVYWSWNNNSSSFENQLSKEASDAEKAKKL 390 Query: 268 WELSEKLVGLA 236 WE+SEKLVGLA Sbjct: 391 WEVSEKLVGLA 401
>POR_MARPA (O80333) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 458 Score = 117 bits (292), Expect = 2e-26 Identities = 51/70 (72%), Positives = 66/70 (94%) Frame = -1 Query: 448 QKFVTKGFVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKV 269 QK++TKG+VSE E+GKR+AQVV++P L+KSGVYWSWNKDS SFEN+LS+EAS+PEKA+++ Sbjct: 388 QKYITKGYVSEEEAGKRMAQVVSDPKLSKSGVYWSWNKDSGSFENELSEEASNPEKAKRL 447 Query: 268 WELSEKLVGL 239 WELSE+L GL Sbjct: 448 WELSERLSGL 457
>POR_CHLRE (Q39617) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 397 Score = 97.1 bits (240), Expect = 2e-20 Identities = 40/71 (56%), Positives = 58/71 (81%) Frame = -1 Query: 448 QKFVTKGFVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKV 269 QK++TKG+VSE E+G+RLA V+++P L KSG YWSW+ + SF+NQ+S+E +D KA K+ Sbjct: 326 QKYITKGYVSEEEAGRRLAAVISDPKLNKSGAYWSWSSTTGSFDNQVSEEVADDSKASKL 385 Query: 268 WELSEKLVGLA 236 W++S KLVGL+ Sbjct: 386 WDISAKLVGLS 396
>POR_PLEBO (O66148) Light-dependent protochlorophyllide reductase (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) (LPOR) Length = 322 Score = 78.2 bits (191), Expect = 9e-15 Identities = 38/75 (50%), Positives = 54/75 (72%), Gaps = 4/75 (5%) Frame = -1 Query: 448 QKFVTKGFVSEAESGKRLAQVVAEPSLTKSGVYWSW----NKDSASFENQLSQEASDPEK 281 QK +T G+VS+ +G+R AQVVA+P +SGV+WSW + SF +LS++ +D K Sbjct: 248 QKNITGGYVSQELAGERTAQVVADPEFKQSGVHWSWGNRQKEGRESFVQELSEKVTDDAK 307 Query: 280 ARKVWELSEKLVGLA 236 A+++WELSEKLVGLA Sbjct: 308 AKRMWELSEKLVGLA 322
>POR_SYNY3 (Q59987) Light-dependent protochlorophyllide reductase (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) (LPOR) Length = 322 Score = 75.9 bits (185), Expect = 4e-14 Identities = 38/74 (51%), Positives = 55/74 (74%), Gaps = 4/74 (5%) Frame = -1 Query: 448 QKFVTKGFVSEAESGKRLAQVVAEPSLTKSGVYWSW-NKDSA---SFENQLSQEASDPEK 281 QK VTKG+VS+ +G+R+A VVA+ SGV+WSW N+ A +F +LS++ SD +K Sbjct: 248 QKNVTKGYVSQELAGERVAMVVADDKFKDSGVHWSWGNRQQAGREAFVQELSEQGSDAQK 307 Query: 280 ARKVWELSEKLVGL 239 A+++W+LSEKLVGL Sbjct: 308 AQRMWDLSEKLVGL 321
>RDH13_MOUSE (Q8CEE7) Retinol dehydrogenase 13 (EC 1.1.1.-)| Length = 334 Score = 33.9 bits (76), Expect = 0.19 Identities = 22/56 (39%), Positives = 30/56 (53%) Frame = -1 Query: 385 VAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA*STANP 218 VAE SG Y+ ++ A S EA D E AR++W S +LVGLA + +P Sbjct: 276 VAEELENVSGKYFDGLREKAP-----SPEAEDEEVARRLWTESARLVGLAMAHGSP 326
>DAPA_XANCP (Q8P9V6) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 302 Score = 33.9 bits (76), Expect = 0.19 Identities = 17/35 (48%), Positives = 20/35 (57%) Frame = +2 Query: 341 PAPVHAGLCQAGLRHHLRQPLAGLRLRHEPLGDEL 445 P PV A L +AG+ H LR PL L H+P D L Sbjct: 250 PIPVKALLQRAGIGHGLRLPLLPLSAAHQPAADRL 284
>DAPA_XANAC (Q8PLN5) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 302 Score = 33.9 bits (76), Expect = 0.19 Identities = 17/35 (48%), Positives = 20/35 (57%) Frame = +2 Query: 341 PAPVHAGLCQAGLRHHLRQPLAGLRLRHEPLGDEL 445 P PV A L +AG+ H LR PL L H+P D L Sbjct: 250 PIPVKALLQRAGIGHGLRLPLLPLSAAHQPAADRL 284
>FIG2_YEAST (P25653) Factor-induced gene 2 precursor (Cell wall adhesin FIG2)| Length = 1609 Score = 31.6 bits (70), Expect = 0.93 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 2/84 (2%) Frame = +3 Query: 198 RCMHASMGFAVDHASPTSFSLSSQTLRAFSGSLASWESWFSKDAESLFQLQYTPDFV--R 371 R H+S F + +P+S SL S T F+ S+ +SW S ++E L T DF Sbjct: 140 RTSHSSSSFELPVTAPSSSSLPSSTSLTFT-SVNPSQSWTSFNSEKSSALSSTIDFTSSE 198 Query: 372 LGSATTCASLLPDSASDTNPLVTN 443 + +T+ SL + DT +T+ Sbjct: 199 ISGSTSPKSL---ESFDTTGTITS 219
>RDH13_HUMAN (Q8NBN7) Retinol dehydrogenase 13 (EC 1.1.1.-)| Length = 331 Score = 30.8 bits (68), Expect = 1.6 Identities = 20/49 (40%), Positives = 25/49 (51%) Frame = -1 Query: 385 VAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGL 239 VAE SG Y+ K A + EA D E AR++W S +LVGL Sbjct: 276 VAEELADVSGKYFDGLKQKAP-----APEAEDEEVARRLWAESARLVGL 319
>RDH14_HUMAN (Q9HBH5) Retinol dehydrogenase 14 (EC 1.1.1.-) (Alcohol| dehydrogenase PAN2) Length = 336 Score = 30.8 bits (68), Expect = 1.6 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = -1 Query: 319 ENQLSQEASDPEKARKVWELSEKLVGL 239 E +L +A D ARK+W++SE +VGL Sbjct: 308 EEELLPKAMDESVARKLWDISEVMVGL 334
>GANA_HUMIN (P83691) Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89)| (Endo-1,4-beta-galactanase) (Galactanase) Length = 332 Score = 30.4 bits (67), Expect = 2.1 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -2 Query: 111 QERPCEWPRECIDLVWKMYNFRQTLE**NRRPD*G 7 Q P WP + +L WK+YN+ TL+ NR D G Sbjct: 92 QTTPAGWPSDINNLAWKLYNY--TLDSMNRFADAG 124
>RDH14_MOUSE (Q9ERI6) Retinol dehydrogenase 14 (EC 1.1.1.-) (Alcohol| dehydrogenase PAN2) Length = 334 Score = 30.0 bits (66), Expect = 2.7 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = -1 Query: 319 ENQLSQEASDPEKARKVWELSEKLVGL 239 E +L +A D ARK+W++SE +VG+ Sbjct: 306 EEELLPKAMDESVARKLWDISEVMVGI 332
>WWOX_MOUSE (Q91WL8) WW domain-containing oxidoreductase (EC 1.1.1.-)| Length = 414 Score = 29.6 bits (65), Expect = 3.5 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = -1 Query: 307 SQEASDPEKARKVWELSEKLV 245 S+EA E AR +WELSE+L+ Sbjct: 385 SEEAQSEETARALWELSERLI 405
>AMYH_SACDI (P04065) Glucoamylase S1 precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) (GAI) Length = 767 Score = 29.3 bits (64), Expect = 4.6 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -1 Query: 388 VVAEPSLTKSGVYWSWNKDSASFENQLSQEASDP 287 V+A PS T ++ W +DSA N + ++DP Sbjct: 371 VIASPSQTHPDYFYQWIRDSALTINSIVSHSADP 404
>AMYI_SACDI (P29760) Glucoamylase S2 precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) (GAII) Length = 768 Score = 29.3 bits (64), Expect = 4.6 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -1 Query: 388 VVAEPSLTKSGVYWSWNKDSASFENQLSQEASDP 287 V+A PS T ++ W +DSA N + ++DP Sbjct: 372 VIASPSQTHPDYFYQWIRDSALTINSIVSHSADP 405
>RGS16_BOVIN (O46471) Regulator of G-protein signaling 16 (RGS16) (Retinally| abundant regulator of G-protein signaling) (RGS-R) Length = 202 Score = 29.3 bits (64), Expect = 4.6 Identities = 20/80 (25%), Positives = 31/80 (38%) Frame = +3 Query: 201 CMHASMGFAVDHASPTSFSLSSQTLRAFSGSLASWESWFSKDAESLFQLQYTPDFVRLGS 380 C A +DH + + Q A A W+ + +S + +P + L + Sbjct: 123 CSEAPKEVNIDHETRELTRTNLQAATAVCFDAAQWKVRALMEKDSYPRFLKSPAYRDLAT 182 Query: 381 ATTCASLLPDSASDTNPLVT 440 T AS P S+S PL T Sbjct: 183 QATAASASPSSSSPAEPLHT 202
>ATXR3_ARATH (O23372) Probable histone-lysine N-methyltransferase ATXR3 (EC| 2.1.1.43) (Trithorax-related protein 3) (TRX-related protein 3) (Protein SET DOMAIN GROUP 2) Length = 2351 Score = 29.3 bits (64), Expect = 4.6 Identities = 21/56 (37%), Positives = 31/56 (55%) Frame = +2 Query: 29 YYSNVCRKLYIFHTRSMHSRGHSQGLSCVIELLKRRKHDNYQISLKKRQVEHRPAS 196 Y S+ CRKL +RS+HS +SQ + E L R + + SL+K +H+ AS Sbjct: 322 YGSSKCRKLSDDCSRSLHSDHYSQHSA---ERLYRDSYPSKNSSLEKYPRKHQDAS 374
>TIE2_BRARE (O73791) Tyrosine-protein kinase receptor Tie-2 precursor (EC| 2.7.10.1) Length = 1116 Score = 28.9 bits (63), Expect = 6.0 Identities = 17/45 (37%), Positives = 25/45 (55%) Frame = +3 Query: 189 RRPRCMHASMGFAVDHASPTSFSLSSQTLRAFSGSLASWESWFSK 323 R+ R + FA+ H T+ +LSSQ L AFS +A S+ S+ Sbjct: 907 RKSRVLETDPAFAIAHR--TASTLSSQQLLAFSADVARGMSYLSQ 949
>NIFK_THIFE (P15052) Nitrogenase molybdenum-iron protein beta chain (EC| 1.18.6.1) (Nitrogenase component I) (Dinitrogenase) Length = 518 Score = 28.5 bits (62), Expect = 7.9 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = -1 Query: 325 SFENQL-SQEASDPEKARKVWELSEKLVGLA*STANPMDACMHLGR 191 +FEN+L + + + ++ K WE EK + NP AC LGR Sbjct: 30 TFENRLPADQVARGQEWTKTWEYREKNFAREALSVNPDKACQPLGR 75
>WWOX_BRARE (Q803A8) WW domain-containing oxidoreductase (EC 1.1.1.-)| Length = 412 Score = 28.5 bits (62), Expect = 7.9 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -1 Query: 307 SQEASDPEKARKVWELSEKLV 245 S +A DP A +WELSE+LV Sbjct: 382 SPQAQDPAAALSLWELSERLV 402
>RFWD2_HUMAN (Q8NHY2) Ring finger and WD repeat domain protein 2 (EC 6.3.2.-)| (Ubiquitin-protein ligase COP1) (Constitutive photomorphogenesis protein 1 homolog) (hCOP1) Length = 731 Score = 28.5 bits (62), Expect = 7.9 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Frame = +3 Query: 195 PRCMHASMGFAVDHASPTSFSLSSQTLRA--FSGSLASWESWFSKDAESLFQLQYTPDFV 368 P H+S+ + +++ P FS SSQT + ++ +LAS + E L Q ++ Sbjct: 318 PSPSHSSIIDSTEYSQPPGFSGSSQTKKQPWYNSTLASRRKRLTAHFEDLEQCYFSTRMS 377 Query: 369 RLGSATTCASLLPD 410 R+ + AS L + Sbjct: 378 RISDDSRTASQLDE 391 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,873,507 Number of Sequences: 219361 Number of extensions: 940278 Number of successful extensions: 3042 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 2982 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3039 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
