ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet31b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RGS20_BOVIN (P79348) Regulator of G-protein signaling 20 (RGS20)... 29 3.9
2ATM_CRYNE (Q5KFE0) Serine/threonine-protein kinase TEL1 (EC 2.7.... 28 5.1
3ADA32_MOUSE (Q8K410) ADAM 32 precursor (A disintegrin and metall... 28 8.7

>RGS20_BOVIN (P79348) Regulator of G-protein signaling 20 (RGS20)|
           (Retina-specific regulator of G-protein signaling)
           (RET-RGS1)
          Length = 374

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
 Frame = +2

Query: 125 PRIQNQPNWAC--CWCCC 172
           P ++NQ + AC  CWCCC
Sbjct: 183 PGVENQGSNACCFCWCCC 200



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>ATM_CRYNE (Q5KFE0) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)|
            (DNA-damage checkpoint kinase TEL1) (Telomere length
            regulation protein 1) (ATM homolog)
          Length = 2967

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 69   MNKFCIIKHVSITFGGTCSPGFKTNQTGRAV 161
            +N FC +  + I  GG+ +PG + NQ G A+
Sbjct: 1555 VNIFCQLGEIRIELGGSGTPGSQPNQMGDAL 1585



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>ADA32_MOUSE (Q8K410) ADAM 32 precursor (A disintegrin and metalloprotease|
           domain 32)
          Length = 750

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 3   TPTQKLHISCIYLPCSHKLRQKMNKFCIIKHVSITFGGTCSPGFKTN 143
           +P+     +C +LP  H+ R + + +C I  V     G C P    N
Sbjct: 432 SPSSTCCKNCQFLPEKHQCRPEKHLYCDIPEVCNGSSGNCPPDVTIN 478


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,160,725
Number of Sequences: 219361
Number of extensions: 556781
Number of successful extensions: 1541
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1537
length of database: 80,573,946
effective HSP length: 39
effective length of database: 72,018,867
effective search space used: 1728452808
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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