ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet31a10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009075.1| Triticum aestivum clone wip1c.pk004.o24:fis, full... 563 e-157
2gb|BT008937.1| Triticum aestivum clone wdi1c.pk004.g19:fis, full... 557 e-156
3gb|BT009243.1| Triticum aestivum clone wlk1.pk0014.f4:fis, full ... 549 e-153
4dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
5dbj|AP005580.3| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
6dbj|AP005525.2| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
7dbj|AK061033.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
8dbj|AK058899.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
9gb|AY305028.1| Oryza sativa (japonica cultivar-group) DRE bindin... 44 0.33
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
11gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 42 1.3
12gb|AC171739.3| Cavia porcellus clone CH234-497P15, complete sequ... 42 1.3
13dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
14dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
15gb|BT018732.1| Zea mays clone EL01N0519G04.d mRNA sequence 40 5.2
16gb|AF493800.1| Zea mays DRE binding factor 1 (dbf1) mRNA, comple... 40 5.2
17ref|XM_651378.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 5.2
18emb|AL392085.12| Human DNA sequence from clone RP11-225L6 on chr... 40 5.2
19emb|AL034452.8|HS682J15 Human DNA sequence from clone RP4-682J15... 40 5.2
20emb|BX004886.8| Zebrafish DNA sequence from clone DKEY-33P4 in l... 40 5.2
21gb|AC087256.9| Homo sapiens 12q BAC RP11-443N24 (Roswell Park Ca... 40 5.2
22gb|AC109581.2| Homo sapiens chromosome 3 clone RP11-168H3, compl... 40 5.2
23gb|AF438327.1| Homo sapiens alpha 1 type XXI collagen precursor ... 40 5.2
24gb|AC159004.5| Mus musculus BAC clone RP23-168H21 from chromosom... 40 5.2
25emb|BX465186.11| Zebrafish DNA sequence from clone DKEY-106M10 i... 40 5.2
26gb|AC021868.17|AC021868 Homo sapiens 12 BAC RP11-679N16 (Roswell... 40 5.2
27gb|AC019209.3|AC019209 Homo sapiens BAC clone RP11-443N24 from S... 40 5.2
28gb|AC006368.2| Homo sapiens BAC clone RP11-252C12 from 2, comple... 40 5.2
29emb|AL929243.7| Zebrafish DNA sequence from clone DKEYP-15G8, co... 40 5.2
30emb|BX294666.6| Zebrafish DNA sequence from clone CH211-251M11 i... 40 5.2
31gb|AC147185.2| Mus musculus BAC clone RP24-119J12 from 8, comple... 40 5.2
32gb|AC133010.2| Homo sapiens chromosome 3 clone RP13-597L11, comp... 40 5.2 
>gb|BT009075.1| Triticum aestivum clone wip1c.pk004.o24:fis, full insert mRNA
            sequence
          Length = 1777

 Score =  563 bits (284), Expect = e-157
 Identities = 372/395 (94%), Gaps = 11/395 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    aacaacaaaataatattccacattacacgattttttgatgagctgattttacatgacaag 60
            |||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||| |
Sbjct: 1754 aacaacaaaataatattccacattacacgatttttt-acgagctaattttacatgaca-g 1697

                                                                        
Query: 61   tctcccactgttacaatctgcagagcagcggaaggaacagcacctagctagaacaatgga 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1696 actcccactgttacaatctgcagagcagcggaaggaacagcacctagctagaaccatgga 1637

                                                                        
Query: 121  ca----gacttcaccggccggagtcactgaccagtgaccgaccaccggagacgccgggca 176
            ||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1636 cacagagacttcaccggccggagtcactgaccagtgaccgaccaccggagacgccgggca 1577

                                                                        
Query: 177  caaaaacgccggcttatagtcatccgggagggactaaccaaaccctacc-acaaagagaa 235
            ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 1576 caaaaacgccggcttatagtcatccgggacggactaaccaaaccctacccacaaagagaa 1517

                                                                        
Query: 236  cgaatcataggtctacacaatgaacaaggattagagacttagagctaatccgctaaaggc 295
            | ||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1516 caaataatagatctacacaatgaacaaggattagagacttagagctaatccgctaaaagc 1457

                                                                        
Query: 296  cggcgcagaatgtctaaaatgccatctgcatcgcggcgacccattaacctagcatcatga 355
            | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1456 ccgtgcagaatgtctaaaatgccatctgcatcgcggcgacccattaacctagcatcatga 1397

                                               
Query: 356  cacgctaaaagacggtactggtagtagtagctgac 390
             ||||| ||||||||||   |||||||||||||||
Sbjct: 1396 aacgct-aaagacggta---gtagtagtagctgac 1366
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>gb|BT008937.1| Triticum aestivum clone wdi1c.pk004.g19:fis, full insert mRNA
            sequence
          Length = 1771

 Score =  557 bits (281), Expect = e-156
 Identities = 348/367 (94%), Gaps = 5/367 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    aacaacaaaataatattccacattacacgattttttgatgagctgattttacatgacaag 60
            ||||||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||
Sbjct: 1695 aacaacaaaataatattccacattacatgattttt-gacgagctaattttacatgacaag 1637

                                                                        
Query: 61   tctcccactgttacaatctgcagagcagcggaaggaacagcacctagctagaacaatgga 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1636 actcccactgttacaatctgcagagcagcggaaggaacagcacctagctagaaccatgga 1577

                                                                        
Query: 121  ca---gacttcaccggccggagtcactgaccagtgaccgaccaccggagacgccgggcac 177
            ||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1576 cacaagacttaaccggccggagtcactgaccagtgaccgaccaccggagacgccgggcac 1517

                                                                        
Query: 178  aaaaacgccggcttatagtcatccgggagggactaaccaaaccctaccacaaagagaacg 237
            |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| 
Sbjct: 1516 aaaaacgccggcttatagtcatccgggacggactaaccaaaccctaccacaa-gagaaca 1458

                                                                        
Query: 238  aatcataggtctacacaatgaacaaggattagagacttagagctaatccgctaaaggccg 297
            ||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 1457 aataatagatctacacaatgaacaaggattagagacttagagctaatccgctaaaagccc 1398

                                                                        
Query: 298  gcgcagaatgtctaaaatgccatctgcatcgcggcgacccattaacctagcatcatgaca 357
            | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1397 gtgcagaatgtctaaaatgccatctgcatcgcggcgacccattaacctaacatcatgaca 1338

                   
Query: 358  cgctaaa 364
            |||||||
Sbjct: 1337 cgctaaa 1331
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>gb|BT009243.1| Triticum aestivum clone wlk1.pk0014.f4:fis, full insert mRNA sequence
          Length = 1261

 Score =  549 bits (277), Expect = e-153
 Identities = 347/367 (94%), Gaps = 5/367 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    aacaacaaaataatattccacattacacgattttttgatgagctgattttacatgacaag 60
            ||||||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||
Sbjct: 1239 aacaacaaaataatattccacattacatgattttt-gacgagctaattttacatgacaag 1181

                                                                        
Query: 61   tctcccactgttacaatctgcagagcagcggaaggaacagcacctagctagaacaatgga 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1180 actcccactgttacaatctgcagagcagcggaaggaacagcacctagctagaaccatgga 1121

                                                                        
Query: 121  ca---gacttcaccggccggagtcactgaccagtgaccgaccaccggagacgccgggcac 177
            ||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1120 cacaagacttaaccggccggagtcactgaccagtgaccgaccaccggagacgccgggcac 1061

                                                                        
Query: 178  aaaaacgccggcttatagtcatccgggagggactaaccaaaccctaccacaaagagaacg 237
            |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| 
Sbjct: 1060 aaaaacgccggcttatagtcatccgggacggactaaccaaaccctaccacaa-gagaaca 1002

                                                                        
Query: 238  aatcataggtctacacaatgaacaaggattagagacttagagctaatccgctaaaggccg 297
            ||| |||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| 
Sbjct: 1001 aataatagatctacacaatgaacaaggattagagagttagagctaatccgctaaaagccc 942

                                                                        
Query: 298  gcgcagaatgtctaaaatgccatctgcatcgcggcgacccattaacctagcatcatgaca 357
            | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 941  gtgcagaatgtctaaaatgccatctgcatcgcggcgacccattaacctaacatcatgaca 882

                   
Query: 358  cgctaaa 364
            |||||||
Sbjct: 881  cgctaaa 875
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 56/64 (87%), Gaps = 4/64 (6%)
 Strand = Plus / Minus

                                                                            
Query: 131      cggccggagtcactgaccagtgaccgaccaccggag----acgccgggcacaaaaacgcc 186
                |||||||||| || |||||||||||| |||||||||    ||||||| ||||||||||||
Sbjct: 12164404 cggccggagtaaccgaccagtgaccggccaccggagacgcacgccggacacaaaaacgcc 12164345

                    
Query: 187      ggct 190
                ||||
Sbjct: 12164344 ggct 12164341



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 300      gcagaatgtctaaaatgccatctgca 325
                |||||||||||||||| |||||||||
Sbjct: 12164181 gcagaatgtctaaaatcccatctgca 12164156
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>dbj|AP005580.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1759_F09
          Length = 149501

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 56/64 (87%), Gaps = 4/64 (6%)
 Strand = Plus / Minus

                                                                         
Query: 131   cggccggagtcactgaccagtgaccgaccaccggag----acgccgggcacaaaaacgcc 186
             |||||||||| || |||||||||||| |||||||||    ||||||| ||||||||||||
Sbjct: 75863 cggccggagtaaccgaccagtgaccggccaccggagacgcacgccggacacaaaaacgcc 75804

                 
Query: 187   ggct 190
             ||||
Sbjct: 75803 ggct 75800



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 300   gcagaatgtctaaaatgccatctgca 325
             |||||||||||||||| |||||||||
Sbjct: 75640 gcagaatgtctaaaatcccatctgca 75615
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>dbj|AP005525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0564H06
          Length = 146823

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 56/64 (87%), Gaps = 4/64 (6%)
 Strand = Plus / Minus

                                                                         
Query: 131   cggccggagtcactgaccagtgaccgaccaccggag----acgccgggcacaaaaacgcc 186
             |||||||||| || |||||||||||| |||||||||    ||||||| ||||||||||||
Sbjct: 98783 cggccggagtaaccgaccagtgaccggccaccggagacgcacgccggacacaaaaacgcc 98724

                 
Query: 187   ggct 190
             ||||
Sbjct: 98723 ggct 98720



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 300   gcagaatgtctaaaatgccatctgca 325
             |||||||||||||||| |||||||||
Sbjct: 98560 gcagaatgtctaaaatcccatctgca 98535
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>dbj|AK061033.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-H09, full
           insert sequence
          Length = 1019

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 56/64 (87%), Gaps = 4/64 (6%)
 Strand = Plus / Minus

                                                                       
Query: 131 cggccggagtcactgaccagtgaccgaccaccggag----acgccgggcacaaaaacgcc 186
           |||||||||| || |||||||||||| |||||||||    ||||||| ||||||||||||
Sbjct: 871 cggccggagtaaccgaccagtgaccggccaccggagacgcacgccggacacaaaaacgcc 812

               
Query: 187 ggct 190
           ||||
Sbjct: 811 ggct 808



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 300 gcagaatgtctaaaatgccatctgca 325
           |||||||||||||||| |||||||||
Sbjct: 648 gcagaatgtctaaaatcccatctgca 623
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>dbj|AK058899.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-A04, full
           insert sequence
          Length = 902

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 56/64 (87%), Gaps = 4/64 (6%)
 Strand = Plus / Minus

                                                                       
Query: 131 cggccggagtcactgaccagtgaccgaccaccggag----acgccgggcacaaaaacgcc 186
           |||||||||| || |||||||||||| |||||||||    ||||||| ||||||||||||
Sbjct: 723 cggccggagtaaccgaccagtgaccggccaccggagacgcacgccggacacaaaaacgcc 664

               
Query: 187 ggct 190
           ||||
Sbjct: 663 ggct 660



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 300 gcagaatgtctaaaatgccatctgca 325
           |||||||||||||||| |||||||||
Sbjct: 500 gcagaatgtctaaaatcccatctgca 475
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>gb|AY305028.1| Oryza sativa (japonica cultivar-group) DRE binding factor  2 (DBF2)
            mRNA, complete cds
          Length = 1403

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 300  gcagaatgtctaaaatgccatctgca 325
            |||||||||||||||| |||||||||
Sbjct: 1269 gcagaatgtctaaaatcccatctgca 1244
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 212      aaccaaaccctaccacaaagagaac 236
                ||||||||||||| |||||||||||
Sbjct: 23950666 aaccaaaccctacaacaaagagaac 23950690
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 365     agacggtactggtagtagtag 385
               |||||||||||||||||||||
Sbjct: 2353879 agacggtactggtagtagtag 2353859
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>gb|AC171739.3| Cavia porcellus clone CH234-497P15, complete sequence
          Length = 158596

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 75     aatctgcagagcagcggaagg 95
              |||||||||||||||||||||
Sbjct: 112362 aatctgcagagcagcggaagg 112382
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>dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0704D04
          Length = 147638

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 212   aaccaaaccctaccacaaagagaac 236
             ||||||||||||| |||||||||||
Sbjct: 97070 aaccaaaccctacaacaaagagaac 97094
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>dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0090K04
          Length = 152556

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 212   aaccaaaccctaccacaaagagaac 236
             ||||||||||||| |||||||||||
Sbjct: 65188 aaccaaaccctacaacaaagagaac 65212
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>gb|BT018732.1| Zea mays clone EL01N0519G04.d mRNA sequence
          Length = 1550

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 166  gacgccgggcacaaaaacgccggc 189
            |||||||| |||||||||||||||
Sbjct: 1439 gacgccggtcacaaaaacgccggc 1416
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>gb|AF493800.1| Zea mays DRE binding factor 1 (dbf1) mRNA, complete cds
          Length = 1042

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 166 gacgccgggcacaaaaacgccggc 189
           |||||||| |||||||||||||||
Sbjct: 933 gacgccggtcacaaaaacgccggc 910
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>ref|XM_651378.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (12.t00027)
           partial mRNA
          Length = 426

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   aacaacaaaataatattcca 20
           ||||||||||||||||||||
Sbjct: 98  aacaacaaaataatattcca 117
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>emb|AL392085.12| Human DNA sequence from clone RP11-225L6 on chromosome 9 Contains
            part of the ASTN2 gene for astrotactin2 (KIAA0634),
            complete sequence
          Length = 159836

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 253  caatgaacaaggattagagactta 276
            |||||||||||||||| |||||||
Sbjct: 2711 caatgaacaaggattaaagactta 2734
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>emb|AL034452.8|HS682J15 Human DNA sequence from clone RP4-682J15 on chromosome 6p11.2-12.3
              Contains the 3' end of the COL21A1 gene for collagen, type
              XXI, alpha 1 (collagen XXI, collagen, type XX, alpha 1,
              COLA1L, COL20A1, DKFZp564B052), complete sequence
          Length = 118431

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      aacaaaataatattccacat 23
              ||||||||||||||||||||
Sbjct: 108757 aacaaaataatattccacat 108738
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>emb|BX004886.8| Zebrafish DNA sequence from clone DKEY-33P4 in linkage group 10,
             complete sequence
          Length = 125715

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   cagaatgtctaaaatgccat 320
             ||||||||||||||||||||
Sbjct: 15758 cagaatgtctaaaatgccat 15777
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>gb|AC087256.9| Homo sapiens 12q BAC RP11-443N24 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 149546

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 1     aacaacaaaataatattccacatt 24
             ||||| ||||||||||||||||||
Sbjct: 11655 aacaaaaaaataatattccacatt 11632
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>gb|AC109581.2| Homo sapiens chromosome 3 clone RP11-168H3, complete sequence
          Length = 155332

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      caaaataatattccacatta 25
              ||||||||||||||||||||
Sbjct: 126212 caaaataatattccacatta 126193
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>gb|AF438327.1| Homo sapiens alpha 1 type XXI collagen precursor (COL21A1) gene, complete
              cds, alternatively spliced
          Length = 381696

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      aacaaaataatattccacat 23
              ||||||||||||||||||||
Sbjct: 337410 aacaaaataatattccacat 337429
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>gb|AC159004.5| Mus musculus BAC clone RP23-168H21 from chromosome 15, complete
             sequence
          Length = 217298

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 307   gtctaaaatgccatctgcat 326
             ||||||||||||||||||||
Sbjct: 81878 gtctaaaatgccatctgcat 81859
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>emb|BX465186.11| Zebrafish DNA sequence from clone DKEY-106M10 in linkage group 10,
              complete sequence
          Length = 247227

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 301    cagaatgtctaaaatgccat 320
              ||||||||||||||||||||
Sbjct: 213605 cagaatgtctaaaatgccat 213624
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>gb|AC021868.17|AC021868 Homo sapiens 12 BAC RP11-679N16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 168227

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 1      aacaacaaaataatattccacatt 24
              ||||| ||||||||||||||||||
Sbjct: 123384 aacaaaaaaataatattccacatt 123407
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>gb|AC019209.3|AC019209 Homo sapiens BAC clone RP11-443N24 from Sequence-12, complete sequence
          Length = 196817

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 1     aacaacaaaataatattccacatt 24
             ||||| ||||||||||||||||||
Sbjct: 58926 aacaaaaaaataatattccacatt 58903
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>gb|AC006368.2| Homo sapiens BAC clone RP11-252C12 from 2, complete sequence
          Length = 171089

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   tctaaaatgccatctgcatc 327
             ||||||||||||||||||||
Sbjct: 52822 tctaaaatgccatctgcatc 52803
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>emb|AL929243.7| Zebrafish DNA sequence from clone DKEYP-15G8, complete sequence
          Length = 159656

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     acaacaaaataatattccacatta 25
             |||| |||||||||||||||||||
Sbjct: 42538 acaaaaaaataatattccacatta 42561
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>emb|BX294666.6| Zebrafish DNA sequence from clone CH211-251M11 in linkage group 10,
              complete sequence
          Length = 184574

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 301    cagaatgtctaaaatgccat 320
              ||||||||||||||||||||
Sbjct: 180028 cagaatgtctaaaatgccat 180009
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>gb|AC147185.2| Mus musculus BAC clone RP24-119J12 from 8, complete sequence
          Length = 164789

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   acctagctagaacaatggac 121
             ||||||||||||||||||||
Sbjct: 94889 acctagctagaacaatggac 94870
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>gb|AC133010.2| Homo sapiens chromosome 3 clone RP13-597L11, complete sequence
          Length = 165036

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 6    caaaataatattccacatta 25
            ||||||||||||||||||||
Sbjct: 7885 caaaataatattccacatta 7866


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,932,010
Number of Sequences: 3902068
Number of extensions: 2932010
Number of successful extensions: 52899
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52792
Number of HSP's gapped (non-prelim): 91
length of query: 390
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 368
effective length of database: 17,147,199,772
effective search space: 6310169516096
effective search space used: 6310169516096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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