>ICAM1_RAT (Q00238) Intercellular adhesion molecule 1 precursor (ICAM-1)|
          Length = 545

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +1

Query: 43  PPKCEPLSSTNHQDTSNKRFFLVAI---IPYKNLFSEEVVHSSLLWGKPHSPVSSCFGSF 213
           PP  +   + N     +KR F  +    +  K+LF  + +   +L+G PH     C G++
Sbjct: 360 PPTSQIQFTLNASPEDHKRRFFCSAALEVDGKSLFKNQTLELHVLYG-PHLDKKDCLGNW 418

Query: 214 TW 219
           TW
Sbjct: 419 TW 420

>VE1_HPV25 (Q02049) Replication protein E1 (EC 3.6.1.-) (ATP-dependent|
           helicase E1)
          Length = 604

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 221 HQVNEPKHEDTGECGLPQRREECTTSSENKFL 126
           HQ++    ED GE G  QR  +C+T S N+ L
Sbjct: 573 HQLDLSDQEDEGENGESQRAFQCSTRSANEHL 604

>PTPRJ_HUMAN (Q12913) Receptor-type tyrosine-protein phosphatase eta precursor|
           (EC 3.1.3.48) (Protein-tyrosine phosphatase eta)
           (R-PTP-eta) (HPTP eta) (Protein-tyrosine phosphatase
           receptor type J) (Density-enhanced phosphatase 1)
           (DEP-1) (CD148 antigen)
          Length = 1337

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +1

Query: 25  SSKYIIPPKCEPLSSTNHQDTSNKRFFLVAIIP---YKNLFSEEVVHSSLLWGKPHS 186
           +S+Y+     E    +NH  T +K   L  +IP   Y    S EV H   +WG P+S
Sbjct: 566 ASEYVYHLVIESKHGSNHTSTYDKAITLQGLIPGTLYNITISPEVDH---VWGDPNS 619

>GLMU_PROMA (Q7VBP2) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 452

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 57  AAKLNQPSGYIQ*KVFFSCHNSIQKFILGRGCTLFSSLGQTT 182
           +A+L+ PSGY   +VF + H  I+K I  R CT   +    T
Sbjct: 130 SARLSNPSGYG--RVFSNEHGHIEKIIEDRDCTKLEAKNNLT 169

>CNTP1_MOUSE (O54991) Contactin-associated protein 1 precursor (Caspr) (Caspr1)|
            (Neurexin 4) (Neurexin IV) (Paranodin) (NCP1) (MHDNIV)
          Length = 1385

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
 Frame = -1

Query: 211  MSQSMKIQGSV------VCPREEKSVQPLPRINFCMELWQLKKTFYWMYPDGWLSLAAHI 50
            ++++M++QG +        PR    VQP       ++ W L   F + + DGW+++    
Sbjct: 1236 LAEAMRVQGELSESNCGAMPRLVSEVQPE------LDPWYLPPDFPYYHDDGWIAILLGF 1289

Query: 49   LV 44
            LV
Sbjct: 1290 LV 1291

>CLFA_STAAR (Q6GIK4) Clumping factor A precursor (Fibrinogen-binding protein A)|
            (Fibrinogen receptor A)
          Length = 1029

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +1

Query: 1    SENNS*FSSSKYIIPPKCEPLSSTNHQDTSNKRFFLVAIIPYKNLFSEEVVHSSLLWG 174
            S ++S   S+  ++PP   P S TN    SNK     +  P  +  SE+  ++SL+WG
Sbjct: 955  SNSDSDSGSNNNVVPPN-SPKSGTN---ASNKNEAKESKEPLPDTGSEDEANTSLIWG 1008

>VE1_HPV19 (Q02048) Replication protein E1 (EC 3.6.1.-) (ATP-dependent|
           helicase E1)
          Length = 604

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 218 QVNEPKHEDTGECGLPQRREECTTSSENKFL 126
           Q+    HE+ GE G  QR  +C+T S N+ L
Sbjct: 574 QLELSDHEEEGENGESQRTFQCSTRSANEHL 604


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,208,645
Number of Sequences: 219361
Number of extensions: 702939
Number of successful extensions: 2129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2128
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)