| Clone Name | rbaet30g08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY110228.1| Zea mays CL32412_1 mRNA sequence Length = 1199 Score = 60.0 bits (30), Expect = 5e-06 Identities = 99/122 (81%) Strand = Plus / Plus Query: 222 cggacttctcccttggaggggtccgttatcacccttatgttccccatcttgatcatggaa 281 ||||||||||| |||| |||||||| | | | | ||||||||||| ||||||||||| Sbjct: 239 cggacttctcctctggacgggtccgtgagcggcttgatgttccccatgttgatcatggac 298 Query: 282 tttgcgaaggccttgaaaaaggcgtcctggctgcccgcgaaccggtcgacgattggcgcc 341 | |||||| | ||| ||| |||| |||||| |||||||| |||||||||| |||||| Sbjct: 299 tgcgcgaagctcgcgaagaagtcgtcttggctggccgcgaactggtcgacgatgggcgcc 358 Query: 342 gt 343 || Sbjct: 359 gt 360
>gb|AC122551.7| Mus musculus chromosome 16, clone RP24-480I8, complete sequence Length = 190760 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2 aaatgactttttaaactttatt 23 |||||||||||||||||||||| Sbjct: 104386 aaatgactttttaaactttatt 104365
>gb|AY032674.1| Nicotiana tabacum peroxidase (PER9-6) mRNA, complete cds Length = 1270 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 ccccatcttgatcatggaatt 283 ||||||||||||||||||||| Sbjct: 950 ccccatcttgatcatggaatt 930
>ref|NM_120756.2| Arabidopsis thaliana peroxidase AT5G06730 mRNA, complete cds Length = 1392 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 atgttccccatcttgatcat 277 |||||||||||||||||||| Sbjct: 1010 atgttccccatcttgatcat 991
>gb|AC132583.3| Mus musculus BAC clone RP24-339P17 from chromosome 3, complete sequence Length = 153573 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 gaaatgactttttaaacttt 20 |||||||||||||||||||| Sbjct: 81232 gaaatgactttttaaacttt 81213
>ref|NM_194553.1| Oryza sativa (japonica cultivar-group) putative peroxidase (OSJNBa0015O22.19), mRNA Length = 1011 Score = 40.1 bits (20), Expect = 4.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 300 aaggcgtcctggctgcccgcgaaccggtcgacgattggcgccgt 343 |||||| |||||||| ||||| ||||||||||| |||||||| Sbjct: 908 aaggcggcctggctggtggcgaagcggtcgacgatgggcgccgt 865
>ref|NM_194528.1| Oryza sativa (japonica cultivar-group) putative copia-type polyprotein (OSJNBa0065H03.10), mRNA Length = 4053 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 atgttccccatcttgatcat 277 |||||||||||||||||||| Sbjct: 3986 atgttccccatcttgatcat 3967
>gb|AC169705.1| Rhesus Macaque BAC CH250-174C17 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 181644 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 29 tcaaacaacaagcatgcacaaatg 52 |||||||||||||| ||||||||| Sbjct: 5208 tcaaacaacaagcaggcacaaatg 5231
>gb|AC037197.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0065H03, complete sequence Length = 141017 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 atgttccccatcttgatcat 277 |||||||||||||||||||| Sbjct: 65933 atgttccccatcttgatcat 65952
>gb|AY857760.1| Triticum monococcum peroxidase 6 (POX6) mRNA, complete cds Length = 1308 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 atgttccccatcttgatcat 277 |||||||||||||||||||| Sbjct: 971 atgttccccatcttgatcat 952
>gb|AC150309.1| Latimeria menadoensis clone VMRC4-39G19, complete sequence Length = 196157 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 atgtgtacatttggttgaca 74 |||||||||||||||||||| Sbjct: 120476 atgtgtacatttggttgaca 120457
>gb|AC125395.3| Mus musculus BAC clone RP23-213J1 from chromosome 14, complete sequence Length = 208938 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 atgactttttaaactttatt 23 |||||||||||||||||||| Sbjct: 25128 atgactttttaaactttatt 25109
>gb|AC138667.8| Mus musculus chromosome 14, clone RP24-122H16, complete sequence Length = 177623 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 atgactttttaaactttatt 23 |||||||||||||||||||| Sbjct: 29924 atgactttttaaactttatt 29943
>gb|AC114593.12| Mus musculus chromosome 14, clone RP23-44B17, complete sequence Length = 210843 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 atgactttttaaactttatt 23 |||||||||||||||||||| Sbjct: 27033 atgactttttaaactttatt 27014
>gb|AY519360.1| Arabidopsis thaliana peroxidase ATP29a gene, complete cds Length = 1414 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 atgttccccatcttgatcat 277 |||||||||||||||||||| Sbjct: 1284 atgttccccatcttgatcat 1265
>gb|AC098740.3| Mus musculus BAC clone RP23-122H3 from 3, complete sequence Length = 219346 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gaaatgactttttaaacttt 20 |||||||||||||||||||| Sbjct: 76927 gaaatgactttttaaacttt 76946
>gb|AC113309.7| Mus musculus chromosome 6, clone RP23-440D19, complete sequence Length = 229553 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 acatcaaatgccacacccac 158 |||||||||||||||||||| Sbjct: 95911 acatcaaatgccacacccac 95892
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 40.1 bits (20), Expect = 4.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 300 aaggcgtcctggctgcccgcgaaccggtcgacgattggcgccgt 343 |||||| |||||||| ||||| ||||||||||| |||||||| Sbjct: 635113 aaggcggcctggctggtggcgaagcggtcgacgatgggcgccgt 635156 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 atgttccccatcttgatcat 277 |||||||||||||||||||| Sbjct: 461759 atgttccccatcttgatcat 461778
>emb|Y11794.1|ATP29A A.thaliana mRNA for peroxidase ATP29a, partial Length = 753 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 atgttccccatcttgatcat 277 |||||||||||||||||||| Sbjct: 314 atgttccccatcttgatcat 295
>gb|BT008584.1| Arabidopsis thaliana clone U51349 putative peroxidase (At5g06730) mRNA, complete cds Length = 1108 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 atgttccccatcttgatcat 277 |||||||||||||||||||| Sbjct: 947 atgttccccatcttgatcat 928
>gb|AC068654.2| Genomic Sequence For Oryza sativa (japonica cultivar-group) cultivar Nipponbare Clone OSJNBa0015O22 From Chromosome 10, complete sequence Length = 189349 Score = 40.1 bits (20), Expect = 4.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 300 aaggcgtcctggctgcccgcgaaccggtcgacgattggcgccgt 343 |||||| |||||||| ||||| ||||||||||| |||||||| Sbjct: 102721 aaggcggcctggctggtggcgaagcggtcgacgatgggcgccgt 102764
>gb|AY532644.1| Mesocricetus auratus microvascular endothelial differentiation gene 1 precursor (MDG1) mRNA, complete cds Length = 982 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 accaattattgccctgaaca 99 |||||||||||||||||||| Sbjct: 674 accaattattgccctgaaca 655
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 4.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 300 aaggcgtcctggctgcccgcgaaccggtcgacgattggcgccgt 343 |||||| |||||||| ||||| ||||||||||| |||||||| Sbjct: 635113 aaggcggcctggctggtggcgaagcggtcgacgatgggcgccgt 635156 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 atgttccccatcttgatcat 277 |||||||||||||||||||| Sbjct: 461759 atgttccccatcttgatcat 461778
>emb|BX831603.1|CNS0A10N Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH18ZC08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1372 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 atgttccccatcttgatcat 277 |||||||||||||||||||| Sbjct: 993 atgttccccatcttgatcat 974
>gb|AC138744.4| Homo sapiens chromosome 17, clone RP11-859E19, complete sequence Length = 177325 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 atgactttttaaactttatt 23 |||||||||||||||||||| Sbjct: 125848 atgactttttaaactttatt 125867
>gb|AF490843.1| Homo sapiens clone PAC 70L19, HOXC gene cluster Length = 152740 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 cacatcaaatgccacaccca 157 |||||||||||||||||||| Sbjct: 28286 cacatcaaatgccacaccca 28267
>gb|AC012531.11|AC012531 Homo sapiens, clone RP11-83K1, complete sequence Length = 171949 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 cacatcaaatgccacaccca 157 |||||||||||||||||||| Sbjct: 88110 cacatcaaatgccacaccca 88091
>gb|AC117539.6| Papio hamadryas, clone RP41-208E11, complete sequence Length = 208592 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 catcaaatgccacacccaca 159 |||||||||||||||||||| Sbjct: 98176 catcaaatgccacacccaca 98157
>gb|AY088509.1| Arabidopsis thaliana clone 7360 mRNA, complete sequence Length = 1351 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 atgttccccatcttgatcat 277 |||||||||||||||||||| Sbjct: 1004 atgttccccatcttgatcat 985
>dbj|AP002032.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPH15 Length = 71277 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 atgttccccatcttgatcat 277 |||||||||||||||||||| Sbjct: 30590 atgttccccatcttgatcat 30609
>dbj|AK118827.1| Arabidopsis thaliana At5g06730 mRNA for putative peroxidase, complete cds, clone: RAFL21-16-B10 Length = 1296 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 atgttccccatcttgatcat 277 |||||||||||||||||||| Sbjct: 1010 atgttccccatcttgatcat 991
>dbj|AK104730.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-C06, full insert sequence Length = 1447 Score = 40.1 bits (20), Expect = 4.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 300 aaggcgtcctggctgcccgcgaaccggtcgacgattggcgccgt 343 |||||| |||||||| ||||| ||||||||||| |||||||| Sbjct: 967 aaggcggcctggctggtggcgaagcggtcgacgatgggcgccgt 924
>dbj|AK104633.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-C08, full insert sequence Length = 1382 Score = 40.1 bits (20), Expect = 4.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 300 aaggcgtcctggctgcccgcgaaccggtcgacgattggcgccgt 343 |||||| |||||||| ||||| ||||||||||| |||||||| Sbjct: 902 aaggcggcctggctggtggcgaagcggtcgacgatgggcgccgt 859
>dbj|AK061462.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-B11, full insert sequence Length = 1447 Score = 40.1 bits (20), Expect = 4.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 300 aaggcgtcctggctgcccgcgaaccggtcgacgattggcgccgt 343 |||||| |||||||| ||||| ||||||||||| |||||||| Sbjct: 967 aaggcggcctggctggtggcgaagcggtcgacgatgggcgccgt 924
>tpe|BN000654.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx125 gene for class III peroxidase 125 precursor, exons 1-3 Length = 2806 Score = 40.1 bits (20), Expect = 4.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 300 aaggcgtcctggctgcccgcgaaccggtcgacgattggcgccgt 343 |||||| |||||||| ||||| ||||||||||| |||||||| Sbjct: 2703 aaggcggcctggctggtggcgaagcggtcgacgatgggcgccgt 2660
>tpe|BN000653.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx124 gene for class III peroxidase 124 precursor, exons 1-2 Length = 6789 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 atgttccccatcttgatcat 277 |||||||||||||||||||| Sbjct: 6722 atgttccccatcttgatcat 6703
>dbj|AP002806.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-721F8, complete sequence Length = 161871 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 29 tcaaacaacaagcatgcacaaatg 52 |||||||||||||| ||||||||| Sbjct: 105163 tcaaacaacaagcaggcacaaatg 105186
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 4.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 300 aaggcgtcctggctgcccgcgaaccggtcgacgattggcgccgt 343 |||||| |||||||| ||||| ||||||||||| |||||||| Sbjct: 635110 aaggcggcctggctggtggcgaagcggtcgacgatgggcgccgt 635153 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 atgttccccatcttgatcat 277 |||||||||||||||||||| Sbjct: 461756 atgttccccatcttgatcat 461775
>dbj|AP004954.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT21G09, TM0131, complete sequence Length = 93645 Score = 40.1 bits (20), Expect = 4.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 258 atgttccccatcttgatcatggaatttgcgaa 289 |||||||||||| |||||||||| || ||||| Sbjct: 47755 atgttccccatcatgatcatggacttggcgaa 47724 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,201,100 Number of Sequences: 3902068 Number of extensions: 3201100 Number of successful extensions: 69288 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 69174 Number of HSP's gapped (non-prelim): 115 length of query: 346 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 324 effective length of database: 17,147,199,772 effective search space: 5555692726128 effective search space used: 5555692726128 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)