ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet30g06 |
|---|---|
| Clone Library Name | barley_pub |
>FLBA_EMENI (P38093) Developmental regulator flbA| Length = 719 Score = 33.5 bits (75), Expect = 0.22 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Frame = +3 Query: 48 HTTTEYKHDHTVPTASSIQSLA*LWFHPLQNVAEATDPSFILATCTTNSSSCPH--ARDI 221 H K+DHT + +I +L L F + + DPS I+ T TT + S AR + Sbjct: 249 HRVRFTKYDHTFTSEEAINNLGSLKFSQSNRMPDPKDPSRIVTTTTTTTFSMAKEMARSV 308 Query: 222 C 224 C Sbjct: 309 C 309
>MATK_LEPPR (Q8MEX8) Maturase K (Intron maturase)| Length = 514 Score = 32.0 bits (71), Expect = 0.64 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Frame = +3 Query: 126 HPLQNVAEATDPSFILATCTTNSSSCPHARDICAVRRPH*QEPSITTSCHEQLI-EAPEI 302 HPL+ E T I + PH+ I +R PH P I + I +AP + Sbjct: 115 HPLEEXNEWTSFRSIHSIFPLMEDKIPHSNFILDIRIPHLTHPEILVRTFRRWIQDAPSL 174 Query: 303 PTACPILHRTIQQKVVHRSVRAALNVGQRVL 395 + +LH HR++ + N+ Q +L Sbjct: 175 HSLRSVLHE-------HRNLIISSNLDQLIL 198
>MT12_MYTED (P80247) Metallothionein 10-II (MT-10-II)| Length = 72 Score = 30.8 bits (68), Expect = 1.4 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Frame = -1 Query: 325 CRMGQAVGISGASMSCSWQLVV--IDGSCQCG 236 CR G A SGA CS VV GSC+CG Sbjct: 23 CRCGDACKCSGADCKCSGCKVVCKCSGSCECG 54
>MATK_DIOSP (Q8MEY1) Maturase K (Intron maturase)| Length = 514 Score = 30.0 bits (66), Expect = 2.4 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Frame = +3 Query: 126 HPLQNVAEATDPSFILATCTTNSSSCPHARDICAVRRPH*QEPSITTSCHEQLI-EAPEI 302 H L+ + E T I + PH+ I +R PH P I + I +AP + Sbjct: 115 HSLERMNEWTSFRSIHSILPLMEDKIPHSNFILDIRIPHLTHPEILVRTFRRWIQDAPSL 174 Query: 303 PTACPILHRTIQQKVVHRSVRAALNVGQRVL 395 + +LH HR++ + N+ Q +L Sbjct: 175 HSLRSVLHE-------HRNLIISSNLDQLIL 198
>MDR10_ARATH (Q9SGY1) Multidrug resistance protein 10 (P-glycoprotein 10)| Length = 1316 Score = 29.6 bits (65), Expect = 3.2 Identities = 16/61 (26%), Positives = 31/61 (50%) Frame = -1 Query: 199 DEELVVHVAKMKEGSVASATFCSG*NHSYAKDCMLLAVGTVWSCLYSVVVCRLYIMIGCM 20 D +V A KE S +F + + DC+L+A+G++ +C++ V +I G + Sbjct: 6 DPAIVDMAAAEKEKKRPSVSFLKLFSFADFYDCVLMALGSIGACIHGASVPVFFIFFGKL 65 Query: 19 L 17 + Sbjct: 66 I 66
>DPYD_PIG (Q28943) Dihydropyrimidine dehydrogenase [NADP+] precursor (EC| 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1025 Score = 29.6 bits (65), Expect = 3.2 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -1 Query: 250 SCQCGLRTAQMSLACGQDEELVVHVAK 170 SC G+ M LACGQD ELV ++ + Sbjct: 670 SCPHGMGERGMGLACGQDPELVRNICR 696
>DPYD_HUMAN (Q12882) Dihydropyrimidine dehydrogenase [NADP+] precursor (EC| 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1025 Score = 29.6 bits (65), Expect = 3.2 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -1 Query: 250 SCQCGLRTAQMSLACGQDEELVVHVAK 170 SC G+ M LACGQD ELV ++ + Sbjct: 670 SCPHGMGERGMGLACGQDPELVRNICR 696
>DPYD_BOVIN (Q28007) Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2) (DPD)| (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1025 Score = 29.6 bits (65), Expect = 3.2 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -1 Query: 250 SCQCGLRTAQMSLACGQDEELVVHVAK 170 SC G+ M LACGQD ELV ++ + Sbjct: 670 SCPHGMGERGMGLACGQDPELVRNICR 696
>MATK_ENCAL (Q8MEY0) Maturase K (Intron maturase)| Length = 514 Score = 29.6 bits (65), Expect = 3.2 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Frame = +3 Query: 126 HPLQNVAEATDPSFILATCTTNSSSCPHARDICAVRRPH*QEPSITTSCHEQLI-EAPEI 302 H L+ + E T I + PH+ I +R PH P I + I +AP + Sbjct: 115 HSLERMNEWTSFRSIHSIFPLMEDKIPHSNFILDIRIPHLTHPEILVRTFRRWIQDAPSL 174 Query: 303 PTACPILHRTIQQKVVHRSVRAALNVGQRVL 395 + +LH HR++ + N+ Q +L Sbjct: 175 HSLRSVLHE-------HRNLIISSNLDQLIL 198
>MATK_DIOED (Q8MEY2) Maturase K (Intron maturase)| Length = 505 Score = 29.6 bits (65), Expect = 3.2 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Frame = +3 Query: 126 HPLQNVAEATDPSFILATCTTNSSSCPHARDICAVRRPH*QEPSITTSCHEQLI-EAPEI 302 H L+ + E T I + PH+ I +R PH P I + I +AP + Sbjct: 115 HSLERMNEWTSFRSIHSIFPLMEDKIPHSNFILDIRIPHLTHPEILVRTFRRWIQDAPSL 174 Query: 303 PTACPILHRTIQQKVVHRSVRAALNVGQRVL 395 + +LH HR++ + N+ Q +L Sbjct: 175 HSLRSVLHE-------HRNLIISSNLDQLIL 198
>RCEM_RHOCA (P11847) Reaction center protein M chain (Photosynthetic reaction| center M subunit) Length = 306 Score = 29.3 bits (64), Expect = 4.1 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +1 Query: 154 PILLSSWPHAPPILHLAHMQGTFVLSADH 240 PIL+ SW APP +H+ T S DH Sbjct: 163 PILMGSWSVAPPYGIFSHLDWTNQFSLDH 191
>GPR78_HUMAN (Q96P69) Probable G-protein coupled receptor 78| Length = 363 Score = 29.3 bits (64), Expect = 4.1 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -1 Query: 334 MVRCRMGQAVGISGASMSCSWQLVVIDGSCQCGLR 230 ++ C GQ++ SGA++ CSW L C LR Sbjct: 126 LLGCAWGQSLAFSGAALGCSW-LGYSSAFASCSLR 159
>KRA92_HUMAN (Q9BYQ4) Keratin-associated protein 9-2 (Keratin-associated protein| 9.2) (Ultrahigh sulfur keratin-associated protein 9.2) Length = 174 Score = 28.9 bits (63), Expect = 5.4 Identities = 24/82 (29%), Positives = 29/82 (35%), Gaps = 9/82 (10%) Frame = +2 Query: 203 PTCKGHLCCPQTTLTRTINNHQ--LP*TAHRGSRDPH--CLPHPASHHSAKGC--P*IRP 364 PTC G CC QT+ + P R P CLP + C P RP Sbjct: 88 PTCCGSSCCGQTSCGSSCGQSSSCAPVYCRRTCYYPTTVCLPGCLNQSCGSNCCQPCCRP 147 Query: 365 SCSQR---RATSTSPHCQKQGC 421 +C + R T P C C Sbjct: 148 ACCETTCCRTTCFQPTCVSSCC 169
>MT10A_MYTED (P80246) Metallothionein 10-Ia (MT-10-Ia)| Length = 72 Score = 28.9 bits (63), Expect = 5.4 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%) Frame = -1 Query: 325 CRMGQAVGISGASMSCSWQLVV--IDGSCQCG 236 CR G A SGA CS VV G C+CG Sbjct: 23 CRCGDACKCSGADCKCSGCKVVCKCSGRCECG 54
>AMT1_CAEEL (P54145) Putative ammonium transporter 1| Length = 534 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/34 (32%), Positives = 16/34 (47%) Frame = -2 Query: 276 HGSWWLLMVLVNVVCGQHKCPLHVGKMKNWWCMW 175 HG W LL+ + + G KM+ W C+W Sbjct: 288 HGKWTLLLTINACLSGMVAACAGCNKMEPWACIW 321
>NUDH_HAEDU (Q7VPB7) Probable (di)nucleoside polyphosphate hydrolase (EC| 3.6.1.-) Length = 197 Score = 28.1 bits (61), Expect = 9.2 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = -2 Query: 165 KKDRWLLLRSVADETIVMLKT 103 +K RW LL+ V+DE+ V LKT Sbjct: 96 QKQRWFLLQLVSDESAVNLKT 116
>GFRA4_HUMAN (Q9GZZ7) GDNF family receptor alpha-4 precursor (GFR-alpha-4)| (Persephin receptor) Length = 299 Score = 28.1 bits (61), Expect = 9.2 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = +2 Query: 320 PASHHSAKGCP*IRPSCSQRRATSTSPHCQKQG 418 PA H+ CP P+C++RR + P C G Sbjct: 77 PALTHALLFCPCAGPACAERRRQTFVPSCAFSG 109
>YBGA_ECOLI (P24252) Hypothetical protein ybgA (TKP) (ORF169)| Length = 169 Score = 28.1 bits (61), Expect = 9.2 Identities = 23/66 (34%), Positives = 30/66 (45%) Frame = +1 Query: 199 LAHMQGTFVLSADHIDKNHQ*PPAAMNSSSRLQRSPLLAPSCIAPFSKRLSIDPSELLST 378 L H+QG F HID + AA+ S R PLLAP + +++ P LS Sbjct: 96 LMHVQGYF---RPHIDSTERQQLAALIDSYRRGEQPLLAP--LMRIKHYMALYPDAWLS- 149 Query: 379 *GNEYF 396 G YF Sbjct: 150 -GQRYF 154 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,301,699 Number of Sequences: 219361 Number of extensions: 1467340 Number of successful extensions: 4056 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3931 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4047 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
