| Clone Name | rbaet30g02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC096916.2| Homo sapiens chromosome 3 clone RP11-92I24, complete sequence Length = 163539 Score = 40.1 bits (20), Expect = 0.44 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 tctgaaaaataaccagattt 49 |||||||||||||||||||| Sbjct: 131585 tctgaaaaataaccagattt 131604
>gb|AC007114.8| Homo sapiens chromosome 17, clone RP11-166P13, complete sequence Length = 148781 Score = 40.1 bits (20), Expect = 0.44 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 aatctgaaaaataaccagat 47 |||||||||||||||||||| Sbjct: 112377 aatctgaaaaataaccagat 112396
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 0.44 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 aatctgaaaaataaccagatttta 51 ||||||||||||||| |||||||| Sbjct: 3105509 aatctgaaaaataactagatttta 3105486
>gb|AC114311.3| Homo sapiens chromosome 5 clone RP11-2N5, complete sequence Length = 96123 Score = 40.1 bits (20), Expect = 0.44 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 ttgattaatctgaaaaataa 41 |||||||||||||||||||| Sbjct: 50377 ttgattaatctgaaaaataa 50396
>dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0041E11 Length = 146335 Score = 40.1 bits (20), Expect = 0.44 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 aatctgaaaaataaccagatttta 51 ||||||||||||||| |||||||| Sbjct: 49297 aatctgaaaaataactagatttta 49274
>emb|AL805976.12| Mouse DNA sequence from clone RP23-34H1 on chromosome 4, complete sequence Length = 192098 Score = 40.1 bits (20), Expect = 0.44 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 tgaaaaataaccagatttta 51 |||||||||||||||||||| Sbjct: 83970 tgaaaaataaccagatttta 83951
>dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0433F09 Length = 150150 Score = 40.1 bits (20), Expect = 0.44 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 aatctgaaaaataaccagatttta 51 ||||||||||||||| |||||||| Sbjct: 73549 aatctgaaaaataactagatttta 73526
>emb|CR788228.11| Zebrafish DNA sequence from clone CH211-15N4 in linkage group 3, complete sequence Length = 156998 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 23 tgattaatctgaaaaataa 41 ||||||||||||||||||| Sbjct: 122111 tgattaatctgaaaaataa 122129
>gb|AC123938.3| Mus musculus BAC clone RP23-412I12 from chromosome 8, complete sequence Length = 193352 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 cttgattaatctgaaaaat 39 ||||||||||||||||||| Sbjct: 62005 cttgattaatctgaaaaat 62023
>emb|AL845333.3| Mouse DNA sequence from clone RP23-245E19 on chromosome 4 Contains part of the Ptprd gene for receptor type protein tyrosine phosphatase D, complete sequence Length = 186256 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 ttgattaatctgaaaaata 40 ||||||||||||||||||| Sbjct: 160038 ttgattaatctgaaaaata 160056
>dbj|AP004488.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT02F05, TM0020, complete sequence Length = 80920 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 atctgaaaaataaccagat 47 ||||||||||||||||||| Sbjct: 66789 atctgaaaaataaccagat 66807
>gb|AE014833.1| Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence Length = 252394 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 27 taatctgaaaaataacca 44 |||||||||||||||||| Sbjct: 119474 taatctgaaaaataacca 119457
>gb|AY762939.1| Klebsiella pneumoniae strain DTS cps gene cluster, complete sequence Length = 24948 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 29 atctgaaaaataaccaga 46 |||||||||||||||||| Sbjct: 20050 atctgaaaaataaccaga 20033
>emb|CR391914.17| Zebrafish DNA sequence from clone CH211-69O18 in linkage group 16, complete sequence Length = 170876 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Plus Query: 34 aaaaataaccagatttta 51 |||||||||||||||||| Sbjct: 159550 aaaaataaccagatttta 159567
>gb|AC124358.4| Mus musculus BAC clone RP24-491B24 from chromosome 3, complete sequence Length = 161119 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 22 ttgattaatctgaaaaat 39 |||||||||||||||||| Sbjct: 114684 ttgattaatctgaaaaat 114667
>emb|BX957306.12| Zebrafish DNA sequence from clone DKEY-119H24 in linkage group 1, complete sequence Length = 224487 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Plus Query: 22 ttgattaatctgaaaaat 39 |||||||||||||||||| Sbjct: 144635 ttgattaatctgaaaaat 144652
>ref|XM_947944.1| Theileria annulata strain Ankara condensin subunit (TA08090) partial mRNA Length = 5175 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 22 ttgattaatctgaaaaat 39 |||||||||||||||||| Sbjct: 2517 ttgattaatctgaaaaat 2500
>emb|AL133549.11| Human DNA sequence from clone RP11-32F11 on chromosome 9p24.1-24.3 Contains the 3'end of the RFX3 gene for regulatory factor X 3 (influences HLA class II expression), a novel gene and a CpG island, complete sequence Length = 162237 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Plus Query: 26 ttaatctgaaaaataacc 43 |||||||||||||||||| Sbjct: 153141 ttaatctgaaaaataacc 153158
>ref|XM_777369.1| PREDICTED: Strongylocentrotus purpuratus similar to THAP domain containing, apoptosis associated protein 1 (predicted) (LOC577120), mRNA Length = 1291 Score = 36.2 bits (18), Expect = 6.9 Identities = 21/22 (95%) Strand = Plus / Plus Query: 17 atgccttgattaatctgaaaaa 38 |||||||||||||||| ||||| Sbjct: 825 atgccttgattaatctcaaaaa 846
>gb|AC153146.5| Mus musculus BAC clone RP23-217F11 from chromosome 8, complete sequence Length = 212278 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 23 tgattaatctgaaaaata 40 |||||||||||||||||| Sbjct: 103372 tgattaatctgaaaaata 103355
>emb|CR354535.11| Zebrafish DNA sequence from clone CH211-199M16 in linkage group 25, complete sequence Length = 225139 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 23 tgattaatctgaaaaata 40 |||||||||||||||||| Sbjct: 99960 tgattaatctgaaaaata 99943
>emb|BX294110.8| Zebrafish DNA sequence from clone DKEYP-19H3 in linkage group 25, complete sequence Length = 176023 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Plus Query: 23 tgattaatctgaaaaata 40 |||||||||||||||||| Sbjct: 119454 tgattaatctgaaaaata 119471
>gb|AC025265.21| Homo sapiens 12 BAC RP11-341G23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 180064 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 ctgaaaaataaccagatt 48 |||||||||||||||||| Sbjct: 8999 ctgaaaaataaccagatt 8982
>dbj|AB198423.1| Klebsiella pneumoniae genomic DNA, strain:NTUH-K2044, cps loci and adjacent region Length = 30792 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 29 atctgaaaaataaccaga 46 |||||||||||||||||| Sbjct: 24956 atctgaaaaataaccaga 24939
>gb|AC007170.6| Arabidopsis thaliana chromosome 2 clone T3P4 map mi310, complete sequence Length = 78568 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 33 gaaaaataaccagatttt 50 |||||||||||||||||| Sbjct: 16883 gaaaaataaccagatttt 16866
>gb|AC100782.2| Homo sapiens, clone RP11-300E4, complete sequence Length = 185123 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 28 aatctgaaaaataaccag 45 |||||||||||||||||| Sbjct: 87137 aatctgaaaaataaccag 87120
>gb|AC093163.4| Homo sapiens BAC clone RP11-774M20 from 4, complete sequence Length = 85988 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 27 taatctgaaaaataacca 44 |||||||||||||||||| Sbjct: 77674 taatctgaaaaataacca 77657
>ref|XM_626978.1| Cryptosporidium parvum Iowa II cryptosporidium 'FGLN' family of putative secreted proteins having signal peptides (cgd3_4360), partial mRNA Length = 1278 Score = 36.2 bits (18), Expect = 6.9 Identities = 21/22 (95%) Strand = Plus / Plus Query: 22 ttgattaatctgaaaaataacc 43 ||||||||| |||||||||||| Sbjct: 1156 ttgattaatttgaaaaataacc 1177
>gb|DQ065564.1| Uncultured freshwater bacterium clone 965006G12.x1 16S ribosomal RNA gene, partial sequence Length = 597 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Plus Query: 34 aaaaataaccagatttta 51 |||||||||||||||||| Sbjct: 418 aaaaataaccagatttta 435
>emb|BX469888.5| Zebrafish DNA sequence from clone CH211-73C20 in linkage group 14, complete sequence Length = 188432 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 25 attaatctgaaaaataac 42 |||||||||||||||||| Sbjct: 17634 attaatctgaaaaataac 17617
>gb|AC140847.4| Homo sapiens 12 BAC RP11-313F23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 134878 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 24 gattaatctgaaaaataa 41 |||||||||||||||||| Sbjct: 132001 gattaatctgaaaaataa 131984
>gb|AC084654.1|CBRG45O23 Caenorhabditis briggsae cosmid G45O23, complete sequence Length = 34686 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 22 ttgattaatctgaaaaat 39 |||||||||||||||||| Sbjct: 16394 ttgattaatctgaaaaat 16377
>dbj|AB117611.1| Klebsiella pneumoniae genomic DNA, strain:NTUH-K2044, mucoviscosity-associated chromosomal fragment Length = 33415 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 29 atctgaaaaataaccaga 46 |||||||||||||||||| Sbjct: 12231 atctgaaaaataaccaga 12214
>gb|AC002523.1|AC002523 Homo sapiens Xq28 BACs 360 F12, GSHB-555C13, complete sequence Length = 228516 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 28 aatctgaaaaataaccag 45 |||||||||||||||||| Sbjct: 192630 aatctgaaaaataaccag 192613
>emb|BX255957.6| Zebrafish DNA sequence from clone CH211-215P14 in linkage group 20, complete sequence Length = 126287 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Plus Query: 24 gattaatctgaaaaataa 41 |||||||||||||||||| Sbjct: 44948 gattaatctgaaaaataa 44965
>emb|CR382381.12| Zebrafish DNA sequence from clone DKEY-208D15 in linkage group 8, complete sequence Length = 91666 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Plus Query: 26 ttaatctgaaaaataacc 43 |||||||||||||||||| Sbjct: 66238 ttaatctgaaaaataacc 66255
>emb|CT573418.2| Pan troglodytes chromosome X clone PTB-046H01 map Xq28, complete sequence Length = 161084 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 28 aatctgaaaaataaccag 45 |||||||||||||||||| Sbjct: 10485 aatctgaaaaataaccag 10468
>emb|CR450775.6| Zebrafish DNA sequence from clone DKEY-121H11 in linkage group 10, complete sequence Length = 132227 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 23 tgattaatctgaaaaata 40 |||||||||||||||||| Sbjct: 73163 tgattaatctgaaaaata 73146
>emb|CT574566.2| Pan troglodytes chromosome X clone CH251-413C05 map Xq28, complete sequence Length = 161928 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 28 aatctgaaaaataaccag 45 |||||||||||||||||| Sbjct: 69686 aatctgaaaaataaccag 69669
>emb|AL928691.7| Zebrafish DNA sequence from clone CH211-51H20 in linkage group 14, complete sequence Length = 167320 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 attaatctgaaaaataac 42 |||||||||||||||||| Sbjct: 22771 attaatctgaaaaataac 22788
>gb|AC164560.3| Mus musculus BAC clone RP23-192D6 from chromosome 3, complete sequence Length = 200505 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 22 ttgattaatctgaaaaat 39 |||||||||||||||||| Sbjct: 55193 ttgattaatctgaaaaat 55176
>emb|AL732486.9| Mouse DNA sequence from clone RP23-90B3 on chromosome X, complete sequence Length = 252977 Score = 36.2 bits (18), Expect = 6.9 Identities = 18/18 (100%) Strand = Plus / Minus Query: 22 ttgattaatctgaaaaat 39 |||||||||||||||||| Sbjct: 195572 ttgattaatctgaaaaat 195555 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 441,004 Number of Sequences: 3902068 Number of extensions: 441004 Number of successful extensions: 120035 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 119882 Number of HSP's gapped (non-prelim): 153 length of query: 51 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 31 effective length of database: 17,155,003,908 effective search space: 531805121148 effective search space used: 531805121148 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)