ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet30f08 |
|---|---|
| Clone Library Name | barley_pub |
>PYRB_BIFLO (Q8G655) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate| transcarbamylase) (ATCase) Length = 326 Score = 35.8 bits (81), Expect = 0.027 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Frame = +3 Query: 84 G*CGVLTHNPSIHSLVHTLCSI-NLHCAQLGRGHLARSMMMI-QINTQSTCSYTLIHDV 254 G CG LT ++HSL+ TLC N+ + L +I +IN +CSY + D+ Sbjct: 161 GLCGDLTFGRTVHSLIETLCRFGNVRFVLISPDELKTPQYVIDRINATDSCSYVEVRDL 219
>SYFA_TROW8 (Q83HH3) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 336 Score = 30.8 bits (68), Expect = 0.88 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%) Frame = +3 Query: 102 THNPSIHSLVHTLCSINLHCAQLGRG---HLARSMMMIQINTQSTCSYTLIHDVQVHMHI 272 TH P H L +C N+ L +G LAR + ++N + C+Y + I Sbjct: 208 THTPVFHQLEGLVCDRNITLGHL-KGTVEDLARYLFGAEVNLRMRCNYFPFTEPSAEFDI 266 Query: 273 SSDG 284 S DG Sbjct: 267 SRDG 270
>UDPE_NPVSL (Q88168) Ecdysteroid UDP-glucosyltransferase precursor (EC 2.4.1.-)| Length = 515 Score = 30.0 bits (66), Expect = 1.5 Identities = 8/31 (25%), Positives = 17/31 (54%) Frame = -1 Query: 121 WMEGLCVNTPHQPVSRGIWYIPHERKKNGGK 29 W+ ++ P +P+ + +WY H ++ G K Sbjct: 446 WLRDAIMDQPMRPLEKAVWYTEHVARRKGAK 476
>ING1_HUMAN (Q9UK53) Inhibitor of growth protein 1| Length = 422 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = -1 Query: 133 CTSEWMEGLCVNTPHQPVSRGIWYIPHERKKN 38 C EW CV H+P +G WY P R +N Sbjct: 374 CPIEWFHFSCVGLNHKP--KGKWYCPKCRGEN 403
>UVRA_CHLTR (O84337) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 1786 Score = 28.9 bits (63), Expect = 3.4 Identities = 22/66 (33%), Positives = 30/66 (45%) Frame = +3 Query: 111 PSIHSLVHTLCSINLHCAQLGRGHLARSMMMIQINTQSTCSYTLIHDVQVHMHISSDGQT 290 PSIH + TLC++ L LGR + S IQ + +Y L+ V+ D T Sbjct: 780 PSIHQKIETLCTLGLQYLPLGRPLYSLSGGEIQ---RLKLAYELLAPVKHPTLYVLDEPT 836 Query: 291 DGC*TH 308 G TH Sbjct: 837 TGLHTH 842
>INGX_HUMAN (Q9P0U5) Inhibitor of growth protein, X-linked (Inhibitor of growth| protein 2) (ING1-like tumor suppressor protein) Length = 42 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -1 Query: 133 CTSEWMEGLCVNTPHQPVSRGIWYIPHERKKNGGK 29 C EW CV+ H+P + WY R KN G+ Sbjct: 8 CPIEWFRFSCVSLNHKPKRK--WYCSRCRGKNDGQ 40
>UVRA_CHLPN (Q9Z985) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 1826 Score = 28.5 bits (62), Expect = 4.4 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +3 Query: 108 NPSIHSLVHTLCSINLHCAQLGR 176 +P IH +H LCS+ L LGR Sbjct: 781 HPKIHEKIHALCSLRLDYLPLGR 803
>SYFA_TROWT (Q83GS9) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 336 Score = 28.1 bits (61), Expect = 5.7 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Frame = +3 Query: 102 THNPSIHSLVHTLCSINLHCAQLGRG---HLARSMMMIQINTQSTCSYTLIHDVQVHMHI 272 TH P H L +C N+ L +G LA + ++N + C+Y + I Sbjct: 208 THTPVFHQLEGLVCDRNITLGHL-KGTVEDLAGYLFGAEVNLRMRCNYFPFTEPSAEFDI 266 Query: 273 SSDG 284 S DG Sbjct: 267 SRDG 270
>PSAA_SYNY3 (P29254) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| Length = 751 Score = 28.1 bits (61), Expect = 5.7 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +3 Query: 18 FTQHLPPFFFLSWGIY 65 F Q L PFF L+WG+Y Sbjct: 256 FAQGLTPFFTLNWGVY 271
>YNG2_YARLI (Q6C5V7) Chromatin modification-related protein YNG2 (ING1 homolog| 2) Length = 283 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/50 (28%), Positives = 20/50 (40%) Frame = -1 Query: 181 CPLPSCAQCKLIEHKVCTSEWMEGLCVNTPHQPVSRGIWYIPHERKKNGG 32 C PS + ++ C EW CV P +G+W+ P K G Sbjct: 231 CQQPSFGEMVACDNDDCQYEWFHYDCVGLAEPP--QGVWFCPSCSKGRKG 278
>CAC1C_RABIT (P15381) Voltage-dependent L-type calcium channel alpha-1C subunit| (Voltage-gated calcium channel alpha subunit Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle) (Smooth muscle calcium channel blocker receptor) Length = 2171 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = +3 Query: 204 IQINTQSTCSYTLIHDVQV-HMHISSDGQTDG 296 + T+STC T++H+ Q+ H +IS G G Sbjct: 20 LSAETESTCKGTVVHEAQLNHFYISPGGSNYG 51
>RECN_XYLFT (Q87BS5) DNA repair protein recN (Recombination protein N)| Length = 557 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = +3 Query: 117 IHSLVHTLCSINLHCAQLGRGHLARSMMMIQINTQSTCSYTLIHDVQV 260 +H+ HTL +N H A+LG MIQ++ T + +D+ + Sbjct: 245 LHAARHTLSRVNEHDARLGEVETLLDNAMIQVDEALTLLDRIHNDLNI 292
>ING2_HUMAN (Q9H160) Inhibitor of growth protein 2 (p33ING2) (Inhibitor of| growth 1-like protein) (ING1Lp) (p32) Length = 280 Score = 27.7 bits (60), Expect = 7.5 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = -1 Query: 145 EHKVCTSEWMEGLCVNTPHQPVSRGIWYIPHERKKN 38 +++ C EW CV+ ++P +G WY P R N Sbjct: 229 DNEQCPIEWFHFSCVSLTYKP--KGKWYCPKCRGDN 262
>ING2_MOUSE (Q9ESK4) Inhibitor of growth protein 2 (p33ING2) (Inhibitor of| growth 1-like protein) Length = 281 Score = 27.7 bits (60), Expect = 7.5 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = -1 Query: 145 EHKVCTSEWMEGLCVNTPHQPVSRGIWYIPHERKKN 38 +++ C EW CV+ ++P +G WY P R N Sbjct: 230 DNEQCPIEWFHFSCVSLTYKP--KGKWYCPKCRGDN 263
>ING1_MOUSE (Q9QXV3) Inhibitor of growth protein 1| Length = 279 Score = 27.3 bits (59), Expect = 9.8 Identities = 11/26 (42%), Positives = 13/26 (50%) Frame = -1 Query: 133 CTSEWMEGLCVNTPHQPVSRGIWYIP 56 C EW CV H+P +G WY P Sbjct: 231 CPIEWFHFSCVGLNHKP--KGKWYCP 254
>SYG_LEIXX (Q6AHF7) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA| ligase) (GlyRS) Length = 463 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/48 (29%), Positives = 23/48 (47%) Frame = +2 Query: 152 FTLRTARERASRSLDDDDTNKHTKYVQLHVDPRRTSTHAYLVRWTDGW 295 F L+T E + + L D NK+ +YV ++P T A + D + Sbjct: 294 FDLKTHIEHSGKDLSYFDQNKNERYVPFVIEPSFGLTRALMAFLVDAY 341
>ODO1_ECOLI (P0AFG3) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 933 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = +3 Query: 249 DVQVHMHISSDGQTDGC*THL 311 DV+ HM SSD QTDG HL Sbjct: 294 DVKYHMGFSSDFQTDGGLVHL 314
>ODO1_ECOL6 (P0AFG4) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 933 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = +3 Query: 249 DVQVHMHISSDGQTDGC*THL 311 DV+ HM SSD QTDG HL Sbjct: 294 DVKYHMGFSSDFQTDGGLVHL 314
>ODO1_ECO57 (P0AFG5) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 933 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = +3 Query: 249 DVQVHMHISSDGQTDGC*THL 311 DV+ HM SSD QTDG HL Sbjct: 294 DVKYHMGFSSDFQTDGGLVHL 314 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,050,231 Number of Sequences: 219361 Number of extensions: 1129569 Number of successful extensions: 2987 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2928 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2984 length of database: 80,573,946 effective HSP length: 85 effective length of database: 61,928,261 effective search space used: 1486278264 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
