ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet30f06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_186656.2| Oryza sativa (japonica cultivar-group), mRNA 76 1e-10
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
3dbj|AP005516.5| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
4dbj|AP004572.5| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
5dbj|AK111771.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
6dbj|AK111745.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
7dbj|AK099214.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
8gb|AY112344.1| Zea mays CL55404_1 mRNA sequence 52 0.002
9gb|AC153609.2| Mus musculus 6 BAC RP23-77I23 (Roswell Park Cance... 42 1.4
10ref|NM_190972.1| Oryza sativa (japonica cultivar-group), predic... 42 1.4
11gb|AC087240.17| Homo sapiens 12p BAC RP11-752F20 (Roswell Park C... 42 1.4
12gb|AC159825.2| Mus musculus BAC clone RP23-100J21 from chromosom... 42 1.4
13dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
14dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
15gb|AC167980.2| Mus musculus BAC clone RP23-28M3 from chromosome ... 42 1.4
16gb|AC146367.3| Dasypus novemcinctus clone VMRC5-80B17, complete ... 40 5.7
17ref|XM_750710.1| Aspergillus fumigatus Af293 hypothetical protei... 40 5.7
18gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequ... 40 5.7 
>ref|NM_186656.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1848

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                        
Query: 131  gcaagcatgggagatatcatcccctggatctcctgcagggtgtgctgtatctgaatctcc 190
            ||||||||||| || |||||||| |||||| ||||||  |||||||||||||||||||||
Sbjct: 1682 gcaagcatgggtgaaatcatcccttggatcccctgcaatgtgtgctgtatctgaatctcc 1623

              
Query: 191  tc 192
            ||
Sbjct: 1622 tc 1621



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 253  gatatcctcagcacgcatctccaggaccttgttcgccaccccaagcaacagccttgcata 312
            |||||| || || ||||||||||| |||||||| |||||||| | ||| | ||| |||||
Sbjct: 1566 gatatcatccgcgcgcatctccagcaccttgtttgccacccccatcaagaacctggcata 1507

                    
Query: 313  cctcggca 320
            ||| ||||
Sbjct: 1506 ccttggca 1499
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                           
Query: 131     gcaagcatgggagatatcatcccctggatctcctgcagggtgtgctgtatctgaatctcc 190
               ||||||||||| || |||||||| |||||| ||||||  |||||||||||||||||||||
Sbjct: 6983770 gcaagcatgggtgaaatcatcccttggatcccctgcaatgtgtgctgtatctgaatctcc 6983711

                 
Query: 191     tc 192
               ||
Sbjct: 6983710 tc 6983709



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                           
Query: 253     gatatcctcagcacgcatctccaggaccttgttcgccaccccaagcaacagccttgcata 312
               |||||| || || ||||||||||| |||||||| |||||||| | ||| | ||| |||||
Sbjct: 6983654 gatatcatccgcgcgcatctccagcaccttgtttgccacccccatcaagaacctggcata 6983595

                       
Query: 313     cctcggca 320
               ||| ||||
Sbjct: 6983594 ccttggca 6983587
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>dbj|AP005516.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0066H10
          Length = 200968

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                         
Query: 131   gcaagcatgggagatatcatcccctggatctcctgcagggtgtgctgtatctgaatctcc 190
             ||||||||||| || |||||||| |||||| ||||||  |||||||||||||||||||||
Sbjct: 10459 gcaagcatgggtgaaatcatcccttggatcccctgcaatgtgtgctgtatctgaatctcc 10400

               
Query: 191   tc 192
             ||
Sbjct: 10399 tc 10398



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                         
Query: 253   gatatcctcagcacgcatctccaggaccttgttcgccaccccaagcaacagccttgcata 312
             |||||| || || ||||||||||| |||||||| |||||||| | ||| | ||| |||||
Sbjct: 10343 gatatcatccgcgcgcatctccagcaccttgtttgccacccccatcaagaacctggcata 10284

                     
Query: 313   cctcggca 320
             ||| ||||
Sbjct: 10283 ccttggca 10276
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>dbj|AP004572.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0668C05
          Length = 142081

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                          
Query: 131    gcaagcatgggagatatcatcccctggatctcctgcagggtgtgctgtatctgaatctcc 190
              ||||||||||| || |||||||| |||||| ||||||  |||||||||||||||||||||
Sbjct: 107585 gcaagcatgggtgaaatcatcccttggatcccctgcaatgtgtgctgtatctgaatctcc 107526

                
Query: 191    tc 192
              ||
Sbjct: 107525 tc 107524



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                          
Query: 253    gatatcctcagcacgcatctccaggaccttgttcgccaccccaagcaacagccttgcata 312
              |||||| || || ||||||||||| |||||||| |||||||| | ||| | ||| |||||
Sbjct: 107469 gatatcatccgcgcgcatctccagcaccttgtttgccacccccatcaagaacctggcata 107410

                      
Query: 313    cctcggca 320
              ||| ||||
Sbjct: 107409 ccttggca 107402
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>dbj|AK111771.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074H04, full
            insert sequence
          Length = 1562

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                        
Query: 131  gcaagcatgggagatatcatcccctggatctcctgcagggtgtgctgtatctgaatctcc 190
            ||||||||||| || |||||||| |||||| ||||||  |||||||||||||||||||||
Sbjct: 1383 gcaagcatgggtgaaatcatcccttggatcccctgcaatgtgtgctgtatctgaatctcc 1324

              
Query: 191  tc 192
            ||
Sbjct: 1323 tc 1322



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 253  gatatcctcagcacgcatctccaggaccttgttcgccaccccaagcaacagccttgcata 312
            |||||| || || ||||||||||| |||||||| |||||||| | ||| | ||| |||||
Sbjct: 1267 gatatcatccgcgcgcatctccagcaccttgtttgccacccccatcaagaacctggcata 1208

                    
Query: 313  cctcggca 320
            ||| ||||
Sbjct: 1207 ccttggca 1200
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>dbj|AK111745.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052H04, full
            insert sequence
          Length = 1993

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                        
Query: 131  gcaagcatgggagatatcatcccctggatctcctgcagggtgtgctgtatctgaatctcc 190
            ||||||||||| || |||||||| |||||| ||||||  |||||||||||||||||||||
Sbjct: 1682 gcaagcatgggtgaaatcatcccttggatcccctgcaatgtgtgctgtatctgaatctcc 1623

              
Query: 191  tc 192
            ||
Sbjct: 1622 tc 1621



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 253  gatatcctcagcacgcatctccaggaccttgttcgccaccccaagcaacagccttgcata 312
            |||||| || || ||||||||||| |||||||| |||||||| | ||| | ||| |||||
Sbjct: 1566 gatatcatccgcgcgcatctccagcaccttgtttgccacccccatcaagaacctggcata 1507

                    
Query: 313  cctcggca 320
            ||| ||||
Sbjct: 1506 ccttggca 1499
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>dbj|AK099214.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013079F16, full
            insert sequence
          Length = 1846

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                        
Query: 131  gcaagcatgggagatatcatcccctggatctcctgcagggtgtgctgtatctgaatctcc 190
            ||||||||||| || |||||||| |||||| ||||||  |||||||||||||||||||||
Sbjct: 1680 gcaagcatgggtgaaatcatcccttggatcccctgcaatgtgtgctgtatctgaatctcc 1621

              
Query: 191  tc 192
            ||
Sbjct: 1620 tc 1619



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 253  gatatcctcagcacgcatctccaggaccttgttcgccaccccaagcaacagccttgcata 312
            |||||| || || ||||||||||| |||||||| |||||||| | ||| | ||| |||||
Sbjct: 1564 gatatcatccgcgcgcatctccagcaccttgtttgccacccccatcaagaacctggcata 1505

                    
Query: 313  cctcggca 320
            ||| ||||
Sbjct: 1504 ccttggca 1497
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>gb|AY112344.1| Zea mays CL55404_1 mRNA sequence
          Length = 603

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 131 gcaagcatgggagatatcatcccctggatctcctgcagggtgtgctgtatctgaatctcc 190
           |||||||| || || |||||||| || ||  |||||||  ||||||||||||||||||||
Sbjct: 233 gcaagcattggtgaaatcatcccttgaatgccctgcagcatgtgctgtatctgaatctcc 292

             
Query: 191 tc 192
           ||
Sbjct: 293 tc 294
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>gb|AC153609.2| Mus musculus 6 BAC RP23-77I23 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 221782

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 99    acaaaattctcttttatctgc 119
             |||||||||||||||||||||
Sbjct: 20602 acaaaattctcttttatctgc 20582
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>ref|NM_190972.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 342

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 390 tcaccagcttcctcctcgcga 410
           |||||||||||||||||||||
Sbjct: 302 tcaccagcttcctcctcgcga 282
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>gb|AC087240.17| Homo sapiens 12p BAC RP11-752F20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 198068

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 49     atgaagcataaatgaacatac 69
              |||||||||||||||||||||
Sbjct: 118258 atgaagcataaatgaacatac 118238
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>gb|AC159825.2| Mus musculus BAC clone RP23-100J21 from chromosome 9, complete sequence
          Length = 209633

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 48     tatgaagcataaatgaacata 68
              |||||||||||||||||||||
Sbjct: 198749 tatgaagcataaatgaacata 198729
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 390      tcaccagcttcctcctcgcga 410
                |||||||||||||||||||||
Sbjct: 34101569 tcaccagcttcctcctcgcga 34101589
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>dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0034E02
          Length = 165497

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 390   tcaccagcttcctcctcgcga 410
             |||||||||||||||||||||
Sbjct: 98047 tcaccagcttcctcctcgcga 98067
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>gb|AC167980.2| Mus musculus BAC clone RP23-28M3 from chromosome 9, complete sequence
          Length = 221376

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 48    tatgaagcataaatgaacata 68
             |||||||||||||||||||||
Sbjct: 22391 tatgaagcataaatgaacata 22371
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>gb|AC146367.3| Dasypus novemcinctus clone VMRC5-80B17, complete sequence
          Length = 124849

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    aacaaaattctcttttatct 117
             ||||||||||||||||||||
Sbjct: 34195 aacaaaattctcttttatct 34214
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>ref|XM_750710.1| Aspergillus fumigatus Af293 hypothetical protein (Afu2g14710) partial
            mRNA
          Length = 2679

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 397  cttcctcctcgcgaccagctcctc 420
            ||||||||||||||||| ||||||
Sbjct: 1015 cttcctcctcgcgaccatctcctc 992
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>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence
          Length = 2906179

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 102     aaattctcttttatctgctcgcag 125
               ||||||| ||||||||||||||||
Sbjct: 2620121 aaattctgttttatctgctcgcag 2620144


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,659,315
Number of Sequences: 3902068
Number of extensions: 3659315
Number of successful extensions: 71197
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71116
Number of HSP's gapped (non-prelim): 80
length of query: 426
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 404
effective length of database: 17,147,199,772
effective search space: 6927468707888
effective search space used: 6927468707888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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