ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet30d03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransgly... 244 2e-61
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 174 1e-40
3dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic D... 174 1e-40
4dbj|AK105513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 1e-40
5gb|AY103775.1| Zea mays PCO076979 mRNA sequence 117 3e-23
6gb|AY023463.1| Oryza sativa microsatellite MRG5788 containing (T... 107 3e-20
7emb|AJ295943.1|FPR295943 Festuca pratensis mRNA for Xet1 protein 94 4e-16
8gb|AY589589.1| Triticum aestivum endotransglucosylase/hydrolase ... 94 4e-16
9emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotransgly... 86 1e-13
10gb|BT019084.1| Zea mays clone Contig673.F mRNA sequence 70 6e-09
11gb|BT014685.1| Oryza sativa AK104912 mRNA sequence 70 6e-09
12dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
13dbj|AK104912.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 6e-09
14dbj|AK066125.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 6e-09
15dbj|AK058291.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 6e-09
16gb|AY106776.1| Zea mays PCO076978 mRNA sequence 70 6e-09
17gb|AY103891.1| Zea mays PCO065722 mRNA sequence 70 6e-09
18dbj|AB196977.1| Sagittaria pygmaea SpXTH4 mRNA for xyloglucan en... 66 1e-07
19gb|DQ100340.1| Eucalyptus globulus putative xyloglucan endotrans... 54 4e-04
20gb|AY476737.1| Gossypium hirsutum XET mRNA, partial sequence 52 0.001
21gb|AF223420.1|AF223420 Asparagus officinalis xyloglucan endotran... 52 0.001
22dbj|AB083025.1| Glycine max mRNA for syringolide-induced protein... 52 0.001
23emb|AJ555155.1|CSA555155 Cucumis sativus XTH3 gene for putative ... 46 0.090
24emb|AJ555126.1|CSA555126 Cucumis sativus mRNA for putative xylog... 46 0.090
25emb|AJ130885.1|FSY130885 Fagus sylvatica mRNA for xyloglucan end... 46 0.090
26gb|AY105365.1| Zea mays PCO092487 mRNA sequence 46 0.090
27gb|U15964.1|ZMU15964 Zea mays xyloglucan endo-transglycosylase h... 46 0.090
28gb|U15781.1|ZMU15781 Zea mays xyloglucan endo-transglycosylase h... 46 0.090
29ref|XM_473787.1| Oryza sativa (japonica cultivar-group), predic... 44 0.36
30gb|AY365421.1| Sesamum indicum xyloglucan endotransglycosylase m... 44 0.36
31gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 44 0.36
32gb|AY144593.1| Malus x domestica xyloglucan endotransglycosylase... 44 0.36
33emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4,... 44 0.36
34gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 44 0.36
35dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
36dbj|AK063614.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.36
37gb|AY841854.1| Vigna radiata xyloglucan endotransglucosylase/hyd... 42 1.4
38gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 42 1.4
39emb|AL157366.12| Human DNA sequence from clone RP11-467D10 on ch... 42 1.4
40dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
41dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.4
42dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.4
43dbj|AP005093.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
44emb|Z35330.1|BJRIBRNA B.japonicum (110) genes for 16S, 23S, 5S r... 42 1.4
45dbj|AB086396.1| Vigna angularis VaXTH2 gene for xyloglucan endot... 42 1.4
46gb|DQ279095.1| Rosa x borboniana xyloglucan endotransglucosylase... 42 1.4
47dbj|D16455.1|SOYEXT2 Soybean mRNA for endo-xyloglucan transferas... 42 1.4
48ref|XM_482113.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.6
49gb|AC147962.1| Oryza sativa chromosome 3 BAC OSJNBa0083K01 genom... 40 5.6
50gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.6
51gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 40 5.6
52emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 5.6
53gb|AC128645.5| Oryza sativa chromosome 3 BAC OSJNBb0016P23 genom... 40 5.6
54gb|AC148685.1| Macaca mulatta Major Histocompatibility Complex B... 40 5.6
55dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
56dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
57dbj|AP004675.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
58dbj|AP003882.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
59dbj|AP004619.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
60dbj|AB086395.1| Vigna angularis VaXTH1 gene for xyloglucan endot... 40 5.6
61gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.6
62gb|L46792.1|ACTXET Actinidia deliciosa clone AdXET-5 xyloglucan ... 40 5.6
63dbj|D16458.1|VIREXT5 V.angularis mRNA for endo-xyloglucan transf... 40 5.6 
>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
           (XEA)
          Length = 1174

 Score =  244 bits (123), Expect = 2e-61
 Identities = 183/203 (90%)
 Strand = Plus / Minus

                                                                       
Query: 214 ggggactacatggagcactcggcagggacgcccttggcgacgcgcttggggtcagtgcag 273
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 932 ggggactacatggagcactcggcggggacgcccttggcgacgcgcttggggtcagtgcag 873

                                                                       
Query: 274 tagttgtagatcatgtaattgctctgcacccaacgcatgcgctgctgccgcgtaagatcc 333
           |||||||||||||||||||||||||| ||||| ||||| ||||||||| |||| || |||
Sbjct: 872 tagttgtagatcatgtaattgctctgtacccaccgcatccgctgctgcagcgtcaggtcc 813

                                                                       
Query: 334 agctcttggttgtaccagtcgccgaccgcggccgcgccgccggtccctggggccgcgtcc 393
           ||||| ||||||||||| |||||| ||||| | |   |||| || || |||||||| |||
Sbjct: 812 agctcctggttgtaccactcgccggccgcgccggaagcgcccgtgcccggggccgcttcc 753

                                  
Query: 394 gtgccgatgctggcgccgcagcg 416
           ||||| |||||||||||||||||
Sbjct: 752 gtgcccatgctggcgccgcagcg 730



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 120  ccccatctttcctatctcaagccgtcttcctccggcgatcaacggatac 168
            ||||||||| ||||||||  |||||||||||||||||||| ||| ||||
Sbjct: 1016 ccccatcttccctatctccggccgtcttcctccggcgatcgacgtatac 968
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  174 bits (88), Expect = 1e-40
 Identities = 169/196 (86%)
 Strand = Plus / Plus

                                                                            
Query: 221      acatggagcactcggcagggacgcccttggcgacgcgcttggggtcagtgcagtagttgt 280
                |||||||||||||||| |||||||||| || || ||||||||| || |||||||||||||
Sbjct: 28773068 acatggagcactcggcggggacgccctgggggaagcgcttgggatcggtgcagtagttgt 28773127

                                                                            
Query: 281      agatcatgtaattgctctgcacccaacgcatgcgctgctgccgcgtaagatccagctctt 340
                |||||||||| |||||||||||||| ||||| |||||||||||||| || || ||||| |
Sbjct: 28773128 agatcatgtacttgctctgcacccaccgcatccgctgctgccgcgtgaggtcgagctcct 28773187

                                                                            
Query: 341      ggttgtaccagtcgccgaccgcggccgcgccgccggtccctggggccgcgtccgtgccga 400
                ||||||||||  | ||| | ||||| ||| ||||||| || || || ||||| |||||||
Sbjct: 28773188 ggttgtaccatccaccggcggcggcggcggcgccggtgccgggtgcggcgtcggtgccga 28773247

                                
Query: 401      tgctggcgccgcagcg 416
                 | |||||||||||||
Sbjct: 28773248 cggtggcgccgcagcg 28773263



 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                           
Query: 256      cgcttggggtcagtgcagtagttgtagatcatgtaattgctctgcacccaacgcatgcg 314
                ||||||| ||||||||||||||||||||||||| | || ||||||||||| | ||||||
Sbjct: 28750655 cgcttggcgtcagtgcagtagttgtagatcatgaacttcctctgcacccacctcatgcg 28750597
to top
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0028E05
          Length = 157631

 Score =  174 bits (88), Expect = 1e-40
 Identities = 169/196 (86%)
 Strand = Plus / Plus

                                                                         
Query: 221   acatggagcactcggcagggacgcccttggcgacgcgcttggggtcagtgcagtagttgt 280
             |||||||||||||||| |||||||||| || || ||||||||| || |||||||||||||
Sbjct: 80843 acatggagcactcggcggggacgccctgggggaagcgcttgggatcggtgcagtagttgt 80902

                                                                         
Query: 281   agatcatgtaattgctctgcacccaacgcatgcgctgctgccgcgtaagatccagctctt 340
             |||||||||| |||||||||||||| ||||| |||||||||||||| || || ||||| |
Sbjct: 80903 agatcatgtacttgctctgcacccaccgcatccgctgctgccgcgtgaggtcgagctcct 80962

                                                                         
Query: 341   ggttgtaccagtcgccgaccgcggccgcgccgccggtccctggggccgcgtccgtgccga 400
             ||||||||||  | ||| | ||||| ||| ||||||| || || || ||||| |||||||
Sbjct: 80963 ggttgtaccatccaccggcggcggcggcggcgccggtgccgggtgcggcgtcggtgccga 81022

                             
Query: 401   tgctggcgccgcagcg 416
              | |||||||||||||
Sbjct: 81023 cggtggcgccgcagcg 81038



 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                        
Query: 256   cgcttggggtcagtgcagtagttgtagatcatgtaattgctctgcacccaacgcatgcg 314
             ||||||| ||||||||||||||||||||||||| | || ||||||||||| | ||||||
Sbjct: 58430 cgcttggcgtcagtgcagtagttgtagatcatgaacttcctctgcacccacctcatgcg 58372
to top
>dbj|AK105513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F01, full
           insert sequence
          Length = 1253

 Score =  174 bits (88), Expect = 1e-40
 Identities = 169/196 (86%)
 Strand = Plus / Minus

                                                                       
Query: 221 acatggagcactcggcagggacgcccttggcgacgcgcttggggtcagtgcagtagttgt 280
           |||||||||||||||| |||||||||| || || ||||||||| || |||||||||||||
Sbjct: 989 acatggagcactcggcggggacgccctgggggaagcgcttgggatcggtgcagtagttgt 930

                                                                       
Query: 281 agatcatgtaattgctctgcacccaacgcatgcgctgctgccgcgtaagatccagctctt 340
           |||||||||| |||||||||||||| ||||| |||||||||||||| || || ||||| |
Sbjct: 929 agatcatgtacttgctctgcacccaccgcatccgctgctgccgcgtgaggtcgagctcct 870

                                                                       
Query: 341 ggttgtaccagtcgccgaccgcggccgcgccgccggtccctggggccgcgtccgtgccga 400
           ||||||||||  | ||| | ||||| ||| ||||||| || || || ||||| |||||||
Sbjct: 869 ggttgtaccatccaccggcggcggcggcggcgccggtgccgggtgcggcgtcggtgccga 810

                           
Query: 401 tgctggcgccgcagcg 416
            | |||||||||||||
Sbjct: 809 cggtggcgccgcagcg 794
to top
>gb|AY103775.1| Zea mays PCO076979 mRNA sequence
          Length = 1495

 Score =  117 bits (59), Expect = 3e-23
 Identities = 89/99 (89%)
 Strand = Plus / Minus

                                                                       
Query: 255 gcgcttggggtcagtgcagtagttgtagatcatgtaattgctctgcacccaacgcatgcg 314
           |||||||||||| ||||||||||||||||||||||| |||| ||||||||| ||||| ||
Sbjct: 995 gcgcttggggtcggtgcagtagttgtagatcatgtacttgcgctgcacccagcgcatccg 936

                                                  
Query: 315 ctgctgccgcgtaagatccagctcttggttgtaccagtc 353
           ||||||| | || || |||||||| ||||||||||||||
Sbjct: 935 ctgctgcagggtgaggtccagctcctggttgtaccagtc 897
to top
>gb|AY023463.1| Oryza sativa microsatellite MRG5788 containing (TCG)X8, closest to
           marker R11, genomic sequence
          Length = 224

 Score =  107 bits (54), Expect = 3e-20
 Identities = 75/82 (91%)
 Strand = Plus / Minus

                                                                       
Query: 221 acatggagcactcggcagggacgcccttggcgacgcgcttggggtcagtgcagtagttgt 280
           |||||||||||||||| |||||||||| || || ||||||||| || |||||||||||||
Sbjct: 82  acatggagcactcggcggggacgccctgggggaagcgcttgggatcggtgcagtagttgt 23

                                 
Query: 281 agatcatgtaattgctctgcac 302
           |||||||||| |||||||||||
Sbjct: 22  agatcatgtacttgctctgcac 1
to top
>emb|AJ295943.1|FPR295943 Festuca pratensis mRNA for Xet1 protein
          Length = 1187

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                       
Query: 228 gcactcggcagggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 287
           ||||||||| |||| |||||  || |||||||||||||| ||||||||||||||||||||
Sbjct: 975 gcactcggcggggaggccctctgctacgcgcttggggtcggtgcagtagttgtagatcat 916

                                      
Query: 288 gtaattgctctgcacccaacgcatgcg 314
           | | || ||||||||||| ||||||||
Sbjct: 915 gaacttcctctgcacccagcgcatgcg 889
to top
>gb|AY589589.1| Triticum aestivum endotransglucosylase/hydrolase XTH5 mRNA,
           complete cds
          Length = 1056

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                       
Query: 228 gcactcggcagggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 287
           |||||||||||| |||||||  || || ||||||||||| ||||||||||||||||||||
Sbjct: 855 gcactcggcaggcacgccctgcgccacccgcttggggtcggtgcagtagttgtagatcat 796

                                      
Query: 288 gtaattgctctgcacccaacgcatgcg 314
           | | || ||||||||||| ||||||||
Sbjct: 795 gaacttcctctgcacccaccgcatgcg 769
to top
>emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
           (XEB)
          Length = 1226

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 76/87 (87%)
 Strand = Plus / Minus

                                                                       
Query: 228 gcactcggcagggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 287
           ||||||||| || |||||||  || || ||||||||||| ||||||||||||||||||||
Sbjct: 958 gcactcggcgggcacgccctgcgccacccgcttggggtcggtgcagtagttgtagatcat 899

                                      
Query: 288 gtaattgctctgcacccaacgcatgcg 314
           | | || ||||||||||| ||||||||
Sbjct: 898 gaacttcctctgcacccaccgcatgcg 872
to top
>gb|BT019084.1| Zea mays clone Contig673.F mRNA sequence
          Length = 977

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                      
Query: 256 cgcttggggtcagtgcagtagttgtagatcatgtaattgctctgcacccaacgcatgcg 314
           ||||||| ||| ||||||||||||||||||||| | || ||||||||||| ||||||||
Sbjct: 263 cgcttggcgtcggtgcagtagttgtagatcatgaacttcctctgcacccagcgcatgcg 321
to top
>gb|BT014685.1| Oryza sativa AK104912 mRNA sequence
          Length = 807

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                      
Query: 256 cgcttggggtcagtgcagtagttgtagatcatgtaattgctctgcacccaacgcatgcg 314
           ||||||| ||||||||||||||||||||||||| | || ||||||||||| | ||||||
Sbjct: 767 cgcttggcgtcagtgcagtagttgtagatcatgaacttcctctgcacccacctcatgcg 709
to top
>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0622F03
          Length = 170064

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                         
Query: 256    cgcttggggtcagtgcagtagttgtagatcatgtaattgctctgcacccaacgcatgcg 314
              ||||||| ||||||||||||||||||||||||| | || ||||||||||| | ||||||
Sbjct: 151221 cgcttggcgtcagtgcagtagttgtagatcatgaacttcctctgcacccacctcatgcg 151163
to top
>dbj|AK104912.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C02, full
           insert sequence
          Length = 1208

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                      
Query: 256 cgcttggggtcagtgcagtagttgtagatcatgtaattgctctgcacccaacgcatgcg 314
           ||||||| ||||||||||||||||||||||||| | || ||||||||||| | ||||||
Sbjct: 947 cgcttggcgtcagtgcagtagttgtagatcatgaacttcctctgcacccacctcatgcg 889
to top
>dbj|AK066125.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059H08, full
           insert sequence
          Length = 1208

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                      
Query: 256 cgcttggggtcagtgcagtagttgtagatcatgtaattgctctgcacccaacgcatgcg 314
           ||||||| ||||||||||||||||||||||||| | || ||||||||||| | ||||||
Sbjct: 947 cgcttggcgtcagtgcagtagttgtagatcatgaacttcctctgcacccacctcatgcg 889
to top
>dbj|AK058291.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E08, full
           insert sequence
          Length = 634

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                      
Query: 256 cgcttggggtcagtgcagtagttgtagatcatgtaattgctctgcacccaacgcatgcg 314
           ||||||| ||||||||||||||||||||||||| | || ||||||||||| | ||||||
Sbjct: 373 cgcttggcgtcagtgcagtagttgtagatcatgaacttcctctgcacccacctcatgcg 315
to top
>gb|AY106776.1| Zea mays PCO076978 mRNA sequence
          Length = 974

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                      
Query: 256 cgcttggggtcagtgcagtagttgtagatcatgtaattgctctgcacccaacgcatgcg 314
           ||||||| ||| ||||||||||||||||||||| | || ||||||||||| ||||||||
Sbjct: 941 cgcttggcgtcggtgcagtagttgtagatcatgaacttcctctgcacccagcgcatgcg 883
to top
>gb|AY103891.1| Zea mays PCO065722 mRNA sequence
          Length = 1280

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 74/87 (85%)
 Strand = Plus / Minus

                                                                       
Query: 228 gcactcggcagggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 287
           ||||||||| || |||||||  | || |||||||| ||| | ||||||||||||||||||
Sbjct: 995 gcactcggcgggcacgccctgcgggaagcgcttggcgtcggcgcagtagttgtagatcat 936

                                      
Query: 288 gtaattgctctgcacccaacgcatgcg 314
           | | |||| ||||||||| ||||||||
Sbjct: 935 gaacttgcgctgcacccagcgcatgcg 909
to top
>dbj|AB196977.1| Sagittaria pygmaea SpXTH4 mRNA for xyloglucan
            endotransglucosylase/hydrolase, complete cds
          Length = 1181

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                             
Query: 268  gtgcagtagttgtagatcatgtaattgctctgcacccaacgcatgcgct 316
            ||||||||||||||||||||||  |||| ||||||||| ||||||||||
Sbjct: 1061 gtgcagtagttgtagatcatgtggttgcgctgcacccagcgcatgcgct 1013
to top
>gb|DQ100340.1| Eucalyptus globulus putative xyloglucan
           endotransglycosylase/hydrolase (XTH4) mRNA, partial cds
          Length = 608

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 255 gcgcttggggtcagtgcagtagttgtagatcatgtaattgctctgcaccca 305
           |||||||| ||| | |||||||||||| |||||||||||  ||||||||||
Sbjct: 398 gcgcttggtgtcggcgcagtagttgtatatcatgtaattcttctgcaccca 348
to top
>gb|AY476737.1| Gossypium hirsutum XET mRNA, partial sequence
          Length = 765

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 256 cgcttggggtcagtgcagtagttgtagatcatgtaatt 293
           ||||||| |||||||||||| ||||| |||||||||||
Sbjct: 519 cgcttggtgtcagtgcagtaattgtaaatcatgtaatt 482
to top
>gb|AF223420.1|AF223420 Asparagus officinalis xyloglucan endotransglycosylase XET2 (AoXET2)
           mRNA, complete cds
          Length = 1375

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 264 gtcagtgcagtagttgtagatcatgtaattgctctgcaccca 305
           ||||| ||| ||||||||||||||||||||  ||||||||||
Sbjct: 866 gtcagcgcaatagttgtagatcatgtaattcttctgcaccca 825
to top
>dbj|AB083025.1| Glycine max mRNA for syringolide-induced protein 19-1-5, complete
           cds
          Length = 1221

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 264 gtcagtgcagtagttgtagatcatgtaattgctctgcaccca 305
           ||||| |||||| |||||||||||||||||  ||||||||||
Sbjct: 913 gtcagagcagtaattgtagatcatgtaattcttctgcaccca 872
to top
>emb|AJ555155.1|CSA555155 Cucumis sativus XTH3 gene for putative xyloglucan
            endotransglycosylase, exons 1-3, clone 4
          Length = 3074

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 264  gtcagtgcagtagttgtagatcatgta 290
            |||||||||||| ||||||||||||||
Sbjct: 2636 gtcagtgcagtaattgtagatcatgta 2610
to top
>emb|AJ555126.1|CSA555126 Cucumis sativus mRNA for putative xyloglucan endotransglycosylase
           (xth3 gene)
          Length = 1038

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 264 gtcagtgcagtagttgtagatcatgta 290
           |||||||||||| ||||||||||||||
Sbjct: 846 gtcagtgcagtaattgtagatcatgta 820
to top
>emb|AJ130885.1|FSY130885 Fagus sylvatica mRNA for xyloglucan endotransglycosylase 1
          Length = 1223

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                              
Query: 255 gcgcttggggtcagtgcagtagttgtagatcatgtaattgctctgcaccca 305
           |||||||| ||| ||||| ||||| || |||||||||||  ||||||||||
Sbjct: 874 gcgcttggtgtctgtgcaatagttataaatcatgtaatttttctgcaccca 824
to top
>gb|AY105365.1| Zea mays PCO092487 mRNA sequence
          Length = 1253

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 268 gtgcagtagttgtagatcatgta 290
           |||||||||||||||||||||||
Sbjct: 898 gtgcagtagttgtagatcatgta 876
to top
>gb|U15964.1|ZMU15964 Zea mays xyloglucan endo-transglycosylase homolog gene, complete
           cds
          Length = 1827

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 268 gtgcagtagttgtagatcatgta 290
           |||||||||||||||||||||||
Sbjct: 913 gtgcagtagttgtagatcatgta 891
to top
>gb|U15781.1|ZMU15781 Zea mays xyloglucan endo-transglycosylase homolog mRNA, complete
           cds
          Length = 1221

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 268 gtgcagtagttgtagatcatgta 290
           |||||||||||||||||||||||
Sbjct: 905 gtgcagtagttgtagatcatgta 883
to top
>ref|XM_473787.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 882

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 269 tgcagtagttgtagatcatgta 290
           ||||||||||||||||||||||
Sbjct: 829 tgcagtagttgtagatcatgta 808
to top
>gb|AY365421.1| Sesamum indicum xyloglucan endotransglycosylase mRNA, partial cds
          Length = 494

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 268 gtgcagtagttgtagatcatgt 289
           ||||||||||||||||||||||
Sbjct: 491 gtgcagtagttgtagatcatgt 470
to top
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 353     cgccgaccgcggccgcgccgccggtc 378
               ||||||||||| ||||||||||||||
Sbjct: 3953238 cgccgaccgcgaccgcgccgccggtc 3953213
to top
>gb|AY144593.1| Malus x domestica xyloglucan endotransglycosylase (XET01) mRNA,
           complete cds
          Length = 1268

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 263 ggtcagtgcagtagttgtagat 284
           ||||||||||||||||||||||
Sbjct: 889 ggtcagtgcagtagttgtagat 868
to top
>emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02,
              complete sequence
          Length = 166804

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 269    tgcagtagttgtagatcatgta 290
              ||||||||||||||||||||||
Sbjct: 141164 tgcagtagttgtagatcatgta 141185
to top
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 353     cgccgaccgcggccgcgccgccggtc 378
               ||||||||||| ||||||||||||||
Sbjct: 1993112 cgccgaccgcgaccgcgccgccggtc 1993137
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 269      tgcagtagttgtagatcatgta 290
                ||||||||||||||||||||||
Sbjct: 30507787 tgcagtagttgtagatcatgta 30507808
to top
>dbj|AK063614.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-D08, full
           insert sequence
          Length = 1041

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 269 tgcagtagttgtagatcatgta 290
           ||||||||||||||||||||||
Sbjct: 892 tgcagtagttgtagatcatgta 871
to top
>gb|AY841854.1| Vigna radiata xyloglucan endotransglucosylase/hydrolase precursor
           (XTH1) mRNA, complete cds
          Length = 1112

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 264 gtcagtgcagtagttgtagat 284
           |||||||||||||||||||||
Sbjct: 813 gtcagtgcagtagttgtagat 793
to top
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 354     gccgaccgcggccgcgccgccggtc 378
               |||| ||||||||||||||||||||
Sbjct: 2610548 gccggccgcggccgcgccgccggtc 2610572
to top
>emb|AL157366.12| Human DNA sequence from clone RP11-467D10 on chromosome 13 Contains
             part of the ATP8A2 gene for ATPase, aminophospholipid
             transporter-like, Class I, type 8A, member 2 (ML-1 protein
             (IB, ATP, ML-1, ATPIB, DKFZP434B1913)) and a novel
             pseudogene, complete sequence
          Length = 37433

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 73    catttcccatcactaatcctt 93
             |||||||||||||||||||||
Sbjct: 14141 catttcccatcactaatcctt 14121
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 351      gtcgccgaccgcggccgcgccgccg 375
                |||| ||||||||||||||||||||
Sbjct: 14555032 gtcgtcgaccgcggccgcgccgccg 14555008
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 359     ccgcggccgcgccgccggtcc 379
               |||||||||||||||||||||
Sbjct: 8125088 ccgcggccgcgccgccggtcc 8125068
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 353     cgccgaccgcggccgcgccgc 373
               |||||||||||||||||||||
Sbjct: 1527697 cgccgaccgcggccgcgccgc 1527677
to top
>dbj|AP005093.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1294_G06
          Length = 115468

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 351   gtcgccgaccgcggccgcgccgccg 375
             |||| ||||||||||||||||||||
Sbjct: 53321 gtcgtcgaccgcggccgcgccgccg 53297
to top
>emb|Z35330.1|BJRIBRNA B.japonicum (110) genes for 16S, 23S, 5S ribosomal RNA, transfer
           RNA-Ala transfer RNA-Ala
          Length = 6726

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 353 cgccgaccgcggccgcgccgc 373
           |||||||||||||||||||||
Sbjct: 312 cgccgaccgcggccgcgccgc 292
to top
>dbj|AB086396.1| Vigna angularis VaXTH2 gene for xyloglucan
            endotransglucosylase/hydrolase, complete cds
          Length = 1712

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 264  gtcagtgcagtagttgtagat 284
            |||||||||||||||||||||
Sbjct: 1450 gtcagtgcagtagttgtagat 1430
to top
>gb|DQ279095.1| Rosa x borboniana xyloglucan endotransglucosylase hydrolase mRNA,
           complete cds
          Length = 1130

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 264 gtcagtgcagtagttgtagat 284
           |||||||||||||||||||||
Sbjct: 872 gtcagtgcagtagttgtagat 852
to top
>dbj|D16455.1|SOYEXT2 Soybean mRNA for endo-xyloglucan transferase, partial cds
          Length = 975

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 264 gtcagtgcagtagttgtagat 284
           |||||||||||||||||||||
Sbjct: 833 gtcagtgcagtagttgtagat 813
to top
>ref|XM_482113.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 456

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 351 gtcgccgaccgcggccgcgc 370
           ||||||||||||||||||||
Sbjct: 87  gtcgccgaccgcggccgcgc 106
to top
>gb|AC147962.1| Oryza sativa chromosome 3 BAC OSJNBa0083K01 genomic sequence,
            complete sequence
          Length = 167239

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 351  gtcgccgaccgcggccgcgc 370
            ||||||||||||||||||||
Sbjct: 2692 gtcgccgaccgcggccgcgc 2711
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 351      gtcgccgaccgcggccgcgc 370
                ||||||||||||||||||||
Sbjct: 21082586 gtcgccgaccgcggccgcgc 21082567
to top
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 393    cgtgccgatgctggcgccgc 412
              ||||||||||||||||||||
Sbjct: 890371 cgtgccgatgctggcgccgc 890352
to top
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 358    accgcggccgcgccgccggt 377
              ||||||||||||||||||||
Sbjct: 360488 accgcggccgcgccgccggt 360507
to top
>gb|AC128645.5| Oryza sativa chromosome 3 BAC OSJNBb0016P23 genomic sequence, complete
             sequence
          Length = 131250

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 351   gtcgccgaccgcggccgcgc 370
             ||||||||||||||||||||
Sbjct: 60342 gtcgccgaccgcggccgcgc 60323
to top
>gb|AC148685.1| Macaca mulatta Major Histocompatibility Complex BAC MMU188J04, complete
             sequence
          Length = 166821

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   gggactacatggagcactcg 234
             ||||||||||||||||||||
Sbjct: 22059 gggactacatggagcactcg 22040
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 351      gtcgccgaccgcggccgcgc 370
                ||||||||||||||||||||
Sbjct: 17904908 gtcgccgaccgcggccgcgc 17904889



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 351     gtcgccgaccgcggccgcgc 370
               ||||||||||||||||||||
Sbjct: 4459566 gtcgccgaccgcggccgcgc 4459585
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 351      gtcgccgaccgcggccgcgc 370
                ||||||||||||||||||||
Sbjct: 21075615 gtcgccgaccgcggccgcgc 21075596
to top
>dbj|AP004675.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0709D11
          Length = 146856

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 351    gtcgccgaccgcggccgcgc 370
              ||||||||||||||||||||
Sbjct: 126414 gtcgccgaccgcggccgcgc 126395
to top
>dbj|AP003882.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1134_B10
          Length = 115074

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 351    gtcgccgaccgcggccgcgc 370
              ||||||||||||||||||||
Sbjct: 106742 gtcgccgaccgcggccgcgc 106761
to top
>dbj|AP004619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0583B06
          Length = 134442

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 351   gtcgccgaccgcggccgcgc 370
             ||||||||||||||||||||
Sbjct: 25456 gtcgccgaccgcggccgcgc 25475
to top
>dbj|AB086395.1| Vigna angularis VaXTH1 gene for xyloglucan
            endotransglucosylase/hydrolase, complete cds
          Length = 1913

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 265  tcagtgcagtagttgtagat 284
            ||||||||||||||||||||
Sbjct: 1610 tcagtgcagtagttgtagat 1591
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 357     gaccgcggccgcgccgccgg 376
               ||||||||||||||||||||
Sbjct: 3610466 gaccgcggccgcgccgccgg 3610447
to top
>gb|L46792.1|ACTXET Actinidia deliciosa clone AdXET-5 xyloglucan endotransglycosylase
           precursor (XET) mRNA, complete cds
          Length = 1178

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 265 tcagtgcagtagttgtagat 284
           ||||||||||||||||||||
Sbjct: 858 tcagtgcagtagttgtagat 839
to top
>dbj|D16458.1|VIREXT5 V.angularis mRNA for endo-xyloglucan transferase, complete cds
          Length = 1319

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 265 tcagtgcagtagttgtagat 284
           ||||||||||||||||||||
Sbjct: 999 tcagtgcagtagttgtagat 980


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,796,259
Number of Sequences: 3902068
Number of extensions: 2796259
Number of successful extensions: 53419
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52323
Number of HSP's gapped (non-prelim): 1095
length of query: 416
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 394
effective length of database: 17,147,199,772
effective search space: 6755996710168
effective search space used: 6755996710168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top