ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet29h07 |
|---|---|
| Clone Library Name | barley_pub |
>WDR18_MOUSE (Q4VBE8) WD-repeat protein 18| Length = 431 Score = 32.3 bits (72), Expect = 0.28 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 1/81 (1%) Frame = -1 Query: 287 YRGGQGGTHGV-LRNPRGVLVGPQSNAPQVPRSGSDADRWQQKGLIPSPVTPMQIMHKAK 111 YRGGQ G G+ L N +L Q D+ QQK + P PVT + Sbjct: 34 YRGGQAGPRGLALLNGEYLLAAQQGKNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGL 93 Query: 110 YCL*HAVMSSIANVIAIQNVC 48 Y V++ IA I + VC Sbjct: 94 Y-----VLAGIAESIYLWEVC 109
>AMBN_BOVIN (Q9XSX7) Ameloblastin precursor| Length = 392 Score = 32.3 bits (72), Expect = 0.28 Identities = 20/75 (26%), Positives = 30/75 (40%) Frame = -1 Query: 356 KSGVPFSPVRDPHMDMTNGPATNYRGGQGGTHGVLRNPRGVLVGPQSNAPQVPRSGSDAD 177 + G SPV + H+ PA G G+L NP G N P + R + Sbjct: 264 EGGAQDSPVPEAHLADPESPALLSELAPGALEGLLANPEG-------NIPNLARGPAGRS 316 Query: 176 RWQQKGLIPSPVTPM 132 R +G+ P+ P+ Sbjct: 317 RGFLRGVTPAAADPL 331
>PALI_EMENI (O93956) pH-response regulator protein palI/RIM9| Length = 549 Score = 32.0 bits (71), Expect = 0.36 Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 5/57 (8%) Frame = -1 Query: 344 PFSPVRDPHMDMTNGPATNY----RGGQGGTHGVLR-NPRGVLVGPQSNAPQVPRSG 189 P S VRD + D GP T + RGG G R P G GP S AP R G Sbjct: 312 PDSRVRDQYSDPRRGPPTGFAPRGRGGYPPRGGYGRGGPYGGPYGPNSRAPLTGRGG 368
>DCD_CHLTR (O84042) Deoxycytidine triphosphate deaminase (EC 3.5.4.13) (dCTP| deaminase) Length = 190 Score = 28.9 bits (63), Expect = 3.1 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 4/91 (4%) Frame = -3 Query: 333 CP*SPHGHDKRPSNELPRRPRRY-SWCFEESTWCTCGTAIQCSSSTPQWL*C**MAAKGS 157 C P+ S E R PR + C +ST+ CG + + P+W + + Sbjct: 84 CIIPPNSFALARSVEYFRIPRNVLTVCIGKSTYARCGLIVNVTPFEPEWEGYVTIEISNT 143 Query: 156 DPFSCYTHANNAQSQIL---SVACCYVIYSQ 73 P +AN +Q+L A C V Y++ Sbjct: 144 TPLPAKVYANEGIAQVLFFEGDATCDVSYAE 174
>DCD_CHLPN (Q9Z8F1) Deoxycytidine triphosphate deaminase (EC 3.5.4.13) (dCTP| deaminase) Length = 190 Score = 28.9 bits (63), Expect = 3.1 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 4/90 (4%) Frame = -3 Query: 333 CP*SPHGHDKRPSNELPRRPRRY-SWCFEESTWCTCGTAIQCSSSTPQWL*C**MAAKGS 157 C P+ S E R PR + C +ST+ CG + + P+W + + Sbjct: 84 CIVPPNSFALARSVEYFRIPRNVLTMCIGKSTYARCGIIVNVTPFEPEWEGHVTIEISNT 143 Query: 156 DPFSCYTHANNAQSQIL---SVACCYVIYS 76 P +AN +Q+L S C V Y+ Sbjct: 144 TPLPAKIYANEGIAQVLFFESSTTCEVSYA 173
>WDR18_RAT (Q499N3) WD-repeat protein 18| Length = 431 Score = 28.9 bits (63), Expect = 3.1 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Frame = -1 Query: 287 YRGGQGGTHGV-LRNPRGVLVGPQSNAPQVPRSGSDADRWQQKGLIPSPVTPMQIMHKAK 111 YRGGQ G G+ L N +L Q D+ QQK + P PVT + Sbjct: 34 YRGGQAGPRGLALLNGEYLLAAQQGKNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGL 93 Query: 110 YCL 102 Y L Sbjct: 94 YVL 96
>CAAL_SILPO (Q5LRC0) Carboxylate-amine ligase SPO2209 (EC 6.3.-.-)| Length = 384 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 9/75 (12%) Frame = +3 Query: 147 RRDQTLLLPSISIRATAGYLRSIGLRSHKYTTWIPQNTMSTSLAAA-------VIRCWAV 305 R D L +S RA L I + H + +W Q+ A V R + Sbjct: 78 REDLKRLRAGVSQRAAEHNLTPIAVSCHPFASWKDQHHTRKERYDALQHALGGVARRMLI 137 Query: 306 C--HVHVGITDRTER 344 C HVH+G+ D+ R Sbjct: 138 CGMHVHIGVEDKALR 152
>DCD_CHLCV (Q823K6) Deoxycytidine triphosphate deaminase (EC 3.5.4.13) (dCTP| deaminase) Length = 190 Score = 28.1 bits (61), Expect = 5.3 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 4/91 (4%) Frame = -3 Query: 333 CP*SPHGHDKRPSNELPRRPRRY-SWCFEESTWCTCGTAIQCSSSTPQWL*C**MAAKGS 157 C P+ S E R PR + C +ST+ CG + + P+W + + Sbjct: 84 CIIPPNSFALAHSVEYFRIPRNILTMCIGKSTYARCGLIVNVTPFEPEWEGYVTIEISNT 143 Query: 156 DPFSCYTHANNAQSQIL---SVACCYVIYSQ 73 P +AN +Q+L + C V Y++ Sbjct: 144 TPLPAKIYANEGIAQVLFFEADEMCEVSYAE 174
>ADCY5_RAT (Q04400) Adenylate cyclase type 5 (EC 4.6.1.1) (Adenylate cyclase| type V) (ATP pyrophosphate-lyase 5) (Adenylyl cyclase 5) Length = 1262 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/35 (42%), Positives = 16/35 (45%) Frame = -1 Query: 284 RGGQGGTHGVLRNPRGVLVGPQSNAPQVPRSGSDA 180 RGG G G R RG G + AP SGS A Sbjct: 107 RGGDDGGRGSRRQRRGAAGGGSTRAPPAGGSGSSA 141
>O10J6_HUMAN (Q8NGY7) Olfactory receptor 10J6| Length = 276 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/52 (26%), Positives = 26/52 (50%) Frame = +3 Query: 66 YYIGYR*HNSMLQTIFGFVHYLHGCNRRRDQTLLLPSISIRATAGYLRSIGL 221 +++ +N L T+ G+ HY+ CN R + + + ++ G SIGL Sbjct: 103 FFVTLAINNCFLLTVMGYDHYMAICNPLRYRVITSKKVCVQLVCGAF-SIGL 153
>MIB2_RAT (Q68LP1) Ubiquitin ligase protein MIB2 (EC 6.3.2.-) (Mind bomb| homolog 2) (RBSC-skeletrophin/dystrophin-like polypeptide) Length = 971 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -1 Query: 356 KSGVPFSPVRDPHMDMTNGPATNYRGGQGGTHGVL 252 + G P +P R + G TNYR G G H +L Sbjct: 41 RHGSPSTPDRTVVVQWDQGTRTNYRAGYQGAHDLL 75
>OXAA1_STAES (Q8CMK4) Membrane protein oxaA 1 precursor| Length = 278 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = +3 Query: 87 HNSMLQTIFGFVHYLHGC--NRRRDQTLLLPSISIRATAGYLRSIG 218 H + T+ GF+ L GC ++ +QT + ++ +++ G+L +G Sbjct: 2 HKRLFITLLGFIILLAGCDYSKEENQTGIFYNVFVKSMDGFLHFLG 47
>OXAA1_STAEQ (Q5HLG6) Membrane protein oxaA 1 precursor| Length = 278 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = +3 Query: 87 HNSMLQTIFGFVHYLHGC--NRRRDQTLLLPSISIRATAGYLRSIG 218 H + T+ GF+ L GC ++ +QT + ++ +++ G+L +G Sbjct: 2 HKRLFITLLGFIILLAGCDYSKEENQTGIFYNVFVKSMDGFLHFLG 47
>MIB2_HUMAN (Q96AX9) Ubiquitin ligase protein MIB2 (EC 6.3.2.-) (Mind bomb| homolog 2) (Zinc finger ZZ type with ankyrin repeat domain protein 1) (Skeletrophin) (Novelzin) (Novel zinc finger protein) (Putative NF-kappa-B-activating protein 002N) Length = 1013 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -1 Query: 356 KSGVPFSPVRDPHMDMTNGPATNYRGGQGGTHGVL 252 + G P +P R + G TNYR G G H +L Sbjct: 99 RHGSPSTPDRTVVVQWDQGTRTNYRAGYQGAHDLL 133
>MIB2_MOUSE (Q8R516) Ubiquitin ligase protein MIB2 (EC 6.3.2.-) (Mind bomb| homolog 2) (Mind bomb-2) (Skeletrophin) (Dystrophin-like protein) (Dyslike) Length = 973 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -1 Query: 356 KSGVPFSPVRDPHMDMTNGPATNYRGGQGGTHGVL 252 + G P +P R + G TNYR G G H +L Sbjct: 41 RHGSPSTPDRTVVVQWDQGTRTNYRAGYQGAHDLL 75
>PLS1_RAT (P58195) Phospholipid scramblase 1 (PL scramblase 1)| (Ca(2+)-dependent phospholipid scramblase 1) Length = 335 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 3/45 (6%) Frame = -1 Query: 302 GPATNYRGGQG---GTHGVLRNPRGVLVGPQSNAPQVPRSGSDAD 177 GP Y G QG G G P+G GPQ P P S + D Sbjct: 35 GPQGPYAGPQGPYPGPQGPYAGPQGPYPGPQPGYPVPPGSYAGGD 79
>HIF1A_CHICK (Q9YIB9) Hypoxia-inducible factor 1 alpha (HIF-1 alpha) (HIF1| alpha) Length = 811 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = -1 Query: 347 VPFSPVRDPHMDMTNGPATNYRGGQGGTHGVLRNPRGVLVGPQSNAPQVP 198 VP SPV + D ++ PA+ Y G + T +R +G L + + P P Sbjct: 625 VPSSPVHVIN-DTSSAPASPYSGNRSRTASPIRAGKGTLEQTEKSCPGAP 673
>WDR18_HUMAN (Q9BV38) WD-repeat protein 18| Length = 432 Score = 27.7 bits (60), Expect = 6.9 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 6/68 (8%) Frame = -1 Query: 287 YRGGQGGTHGVLRNPRGVLVGPQSNAPQVPRSGSDA------DRWQQKGLIPSPVTPMQI 126 YRGGQ G G+ +L G A Q+ ++ A D+ QQK + P PVT + Sbjct: 34 YRGGQAGPRGL-----ALLNGEYLLAAQLGKNYISAWELQRKDQLQQKIMCPGPVTCLTA 88 Query: 125 MHKAKYCL 102 Y L Sbjct: 89 SPNGLYVL 96
>CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor| Length = 1775 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +1 Query: 136 GVTGEGIRPFCCHLSASEPLRGT*G 210 G TGE +P C LS EPL+G G Sbjct: 633 GATGEPGKPALCDLSLIEPLKGDKG 657
>EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma| breakpoint region 1 protein) Length = 656 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -1 Query: 302 GPATNYRGGQGGTHGVLRNPRGV 234 GP +RGG+GG G R RG+ Sbjct: 583 GPGGMFRGGRGGDRGGFRGGRGM 605
>EWS_MOUSE (Q61545) RNA-binding protein EWS| Length = 655 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -1 Query: 302 GPATNYRGGQGGTHGVLRNPRGV 234 GP +RGG+GG G R RG+ Sbjct: 582 GPGGMFRGGRGGDRGGFRGGRGM 604
>UMP1_ARATH (Q9LKA5) Unknown mitochondrial protein At3g15000| Length = 395 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/52 (30%), Positives = 23/52 (44%) Frame = -1 Query: 323 PHMDMTNGPATNYRGGQGGTHGVLRNPRGVLVGPQSNAPQVPRSGSDADRWQ 168 P +M P NY GG +G + P+ PQ+N Q SG ++Q Sbjct: 328 PANNMGGAPPPNYGGGPPPQYGAVPPPQYGGAPPQNNNYQQQGSGMQQPQYQ 379 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,669,202 Number of Sequences: 219361 Number of extensions: 1348083 Number of successful extensions: 3307 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3215 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3301 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
