ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet29h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SPT6H_CAEEL (P34703) Suppressor of Ty 6 homolog (Abnormal embryo... 30 1.1
2NLT43_HORVU (Q42842) Nonspecific lipid-transfer protein 4.3 prec... 30 1.9
3NLT42_HORVU (Q43875) Nonspecific lipid-transfer protein 4.2 prec... 30 1.9
4NLT41_HORVU (Q43767) Nonspecific lipid-transfer protein 4.1 prec... 30 1.9
5ATP7A_CRIGR (P49015) Copper-transporting ATPase 1 (EC 3.6.3.4) (... 29 3.3
6SYI_YERPS (Q66ES4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 28 7.3
7SYI_YERPE (Q8ZIM0) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 28 7.3
8ATP7A_RAT (P70705) Copper-transporting ATPase 1 (EC 3.6.3.4) (Co... 27 9.5
9KPPR_SPIOL (P09559) Phosphoribulokinase, chloroplast precursor (... 27 9.5
10ATP7A_HUMAN (Q04656) Copper-transporting ATPase 1 (EC 3.6.3.4) (... 27 9.5
11GPMI_METMA (Q8PYF8) 2,3-bisphosphoglycerate-independent phosphog... 27 9.5

>SPT6H_CAEEL (P34703) Suppressor of Ty 6 homolog (Abnormal embryogenesis protein|
            5)
          Length = 1521

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -3

Query: 286  IAPAIDAEYVEVTHTYIYMN-KCSHIIFMWDIYRERQRERGRSIYVEPVLHGRP 128
            + P I   +   TH Y + N  C     +    RE++RE GRS YV    + +P
Sbjct: 1384 VQPMIQISHEITTHKYFFPNGTCEETEAVEQFVREKKRELGRSPYVFSASYRQP 1437



to top

>NLT43_HORVU (Q42842) Nonspecific lipid-transfer protein 4.3 precursor (LTP 4.3)|
          Length = 115

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -1

Query: 348 PYAISASVDCFKIR 307
           PYAISASVDC KIR
Sbjct: 102 PYAISASVDCSKIR 115



to top

>NLT42_HORVU (Q43875) Nonspecific lipid-transfer protein 4.2 precursor (LTP 4.2)|
           (Low-temperature-responsive protein 4.9)
          Length = 115

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -1

Query: 348 PYAISASVDCFKIR 307
           PYAISASVDC KIR
Sbjct: 102 PYAISASVDCSKIR 115



to top

>NLT41_HORVU (Q43767) Nonspecific lipid-transfer protein 4.1 precursor (LTP 4.1)|
           (CW21) (CW-21)
          Length = 115

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -1

Query: 348 PYAISASVDCFKIR 307
           PYAISASVDC KIR
Sbjct: 102 PYAISASVDCSKIR 115



to top

>ATP7A_CRIGR (P49015) Copper-transporting ATPase 1 (EC 3.6.3.4) (Copper pump 1)|
           (Fragment)
          Length = 1476

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 249 HIHTYI*INALILSSCGIYIERDREREDGVSMLSQFCMAG 130
           H   YI ++ +  +SC   IER+  RE+G+  +    MAG
Sbjct: 477 HSKCYIQVSGMTCASCVANIERNLRREEGIYSVLVALMAG 516



to top

>SYI_YERPS (Q66ES4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 938

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 199 DIYRERQRERGRSIYVEPVLHGRPYCSIH 113
           D+  E  RE+G  ++VE +LH  P C  H
Sbjct: 381 DVVVELLREKGALLHVEKLLHSYPCCWRH 409



to top

>SYI_YERPE (Q8ZIM0) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 938

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 199 DIYRERQRERGRSIYVEPVLHGRPYCSIH 113
           D+  E  RE+G  ++VE +LH  P C  H
Sbjct: 381 DVVVELLREKGALLHVEKLLHSYPCCWRH 409



to top

>ATP7A_RAT (P70705) Copper-transporting ATPase 1 (EC 3.6.3.4) (Copper pump 1)|
           (Menkes disease-associated protein homolog)
          Length = 1492

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 237 YI*INALILSSCGIYIERDREREDGVSMLSQFCMAG 130
           YI ++ +  +SC   IER+  RE+G+  +    MAG
Sbjct: 483 YIQVSGMTCASCVANIERNLRREEGIYSVLVALMAG 518



to top

>KPPR_SPIOL (P09559) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)|
           (Phosphopentokinase) (PRKase) (PRK)
          Length = 402

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 280 PAIDAEYVEVTHTYIYMNKCSHIIFMWDIYRERQRERGRSI 158
           P  DA   E+    IY++  + + F W I R+  +ERG S+
Sbjct: 180 PMYDARVRELLDFSIYLDISNEVKFAWKIQRD-MKERGHSL 219



to top

>ATP7A_HUMAN (Q04656) Copper-transporting ATPase 1 (EC 3.6.3.4) (Copper pump 1)|
           (Menkes disease-associated protein)
          Length = 1500

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 237 YI*INALILSSCGIYIERDREREDGVSMLSQFCMAG 130
           YI +  +  +SC   IER+  RE+G+  +    MAG
Sbjct: 491 YIQVTGMTCASCVANIERNLRREEGIYSILVALMAG 526



to top

>GPMI_METMA (Q8PYF8) 2,3-bisphosphoglycerate-independent phosphoglycerate|
           mutase (EC 5.4.2.1) (Phosphoglyceromutase)
           (BPG-independent PGAM) (iPGM)
          Length = 521

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 215 MRAFIHIYVCMCDLNVLSVDCWGYRQQVVDQRILKQSTEAL 337
           MR  +H+      L ++ +D WGYR++     IL  ST  L
Sbjct: 1   MRISLHMTQARRPLMLMILDGWGYREEKEGNAILAASTPHL 41


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,039,783
Number of Sequences: 219361
Number of extensions: 1009630
Number of successful extensions: 2259
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2258
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top