>AGAZ_ECOLI (P42903) Putative tagatose 6-phosphate kinase agaZ (EC 2.7.1.144)|
          Length = 426

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 42  VNFSYTKCIDAQPAQVNSLSQMLK 113
           V F +T  ID QPA+ ++LSQM++
Sbjct: 229 VEFDHTNVIDYQPAKASALSQMVE 252

>L_VSVSJ (P03523) Large structural protein (L protein) (Transcriptase)|
           (Replicase) [Includes: RNA-directed RNA polymerase (EC
           2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
           2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2109

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 175 SKDTATSVLYQI*KSAKEWYTDASLLKLTK*-RRQPEQKEWPTPASMQSHRLKW 333
           + D A  VL+Q     K+W+ +  LL      +   ++  WPT A +Q    KW
Sbjct: 391 ASDLARIVLFQQFNDHKKWFVNGDLLPHDHPFKSHVKENTWPTAAQVQDFGDKW 444

>Y1002_MYCTU (O05586) Hypothetical protein Rv1002c/MT1031|
          Length = 503

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -2

Query: 338 WRHFNRCDCMDAGVGHSFCSGWRLYFVSLSRDASVYH--SFADFQIW*STLVAVSLLH 171
           WR F R D   A V   +C+GW  +F  + R    ++  + A F +   +LV   +L+
Sbjct: 392 WRMFVRRDWRYAVVLVGYCAGWLPWFADIDRQMYFFYAATMAPFLVMGISLVLGDILY 449

>POLS_RUBVM (P08563) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 992

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 388 PKTAHPGCFSGNNDECSGAIS 326
           P TA P C +G ND C G +S
Sbjct: 416 PATAPPPCHAGLNDSCGGFLS 436

>POLS_RUBVH (P21480) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 1063

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 388 PKTAHPGCFSGNNDECSGAIS 326
           P TA P C +G ND C G +S
Sbjct: 417 PATAPPPCHAGLNDSCGGFLS 437

>YKQ3_CAEEL (P34298) Hypothetical protein C06E1.3|
          Length = 397

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 314 CMDAGVGHSFCSGWRLYFVSLSRDASV 234
           C+  G+G   C  WR+Y +S   DAS+
Sbjct: 272 CVLCGLGLGICEHWRIYTLSTFLDASL 298

>TSD2_USTMA (Q99107) Protein TSD2|
          Length = 845

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 20  TKKKNREGQFQLHKMHRRTTCTGKLVVTNAESH 118
           ++++ R  Q Q HK   R+T      +TNAE H
Sbjct: 254 SRRRQRHKQGQRHKPRHRSTSASATRLTNAERH 286


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,438,533
Number of Sequences: 219361
Number of extensions: 967562
Number of successful extensions: 2128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2127
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)