ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet29g10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC145968.3| Pan troglodytes BAC clone RP43-12H15 from 7, complete sequence Length = 192898 Score = 46.1 bits (23), Expect = 0.085 Identities = 23/23 (100%) Strand = Plus / Plus Query: 324 gttgaaatggcgccactgcactc 346 ||||||||||||||||||||||| Sbjct: 173925 gttgaaatggcgccactgcactc 173947
>gb|AC091731.4| Homo sapiens BAC clone RP11-343F24 from 7, complete sequence Length = 114253 Score = 46.1 bits (23), Expect = 0.085 Identities = 23/23 (100%) Strand = Plus / Minus Query: 324 gttgaaatggcgccactgcactc 346 ||||||||||||||||||||||| Sbjct: 102057 gttgaaatggcgccactgcactc 102035
>emb|AL672236.18| Mouse DNA sequence from clone RP23-206L21 on chromosome 11 Contains a ribosomal protein S6 (Rps6) pseudogene, a novel gene, the gene for a novel immunoglobulin domain containing protein and two CpG islands, complete sequence Length = 219893 Score = 46.1 bits (23), Expect = 0.085 Identities = 26/27 (96%) Strand = Plus / Minus Query: 38 gaaggtcaatttcagttacacaaaatg 64 |||||||| |||||||||||||||||| Sbjct: 85943 gaaggtcattttcagttacacaaaatg 85917
>ref|XM_507256.1| PREDICTED Oryza sativa (japonica cultivar-group), P0493A04.32 mRNA Length = 1146 Score = 44.1 bits (22), Expect = 0.34 Identities = 46/54 (85%) Strand = Plus / Minus Query: 340 tgcactcgtcattgttgccgctgaagcatccaggatgggcagtcttgggaactc 393 |||| ||||| |||||||| ||||||||||| ||| || ||| |||||| |||| Sbjct: 780 tgcaatcgtcgttgttgccactgaagcatcctggacggacagacttgggcactc 727
>ref|XM_482782.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1107 Score = 44.1 bits (22), Expect = 0.34 Identities = 46/54 (85%) Strand = Plus / Minus Query: 340 tgcactcgtcattgttgccgctgaagcatccaggatgggcagtcttgggaactc 393 |||| ||||| |||||||| ||||||||||| ||| || ||| |||||| |||| Sbjct: 706 tgcaatcgtcgttgttgccactgaagcatcctggacggacagacttgggcactc 653
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.34 Identities = 46/54 (85%) Strand = Plus / Plus Query: 340 tgcactcgtcattgttgccgctgaagcatccaggatgggcagtcttgggaactc 393 |||| ||||| |||||||| ||||||||||| ||| || ||| |||||| |||| Sbjct: 22523203 tgcaatcgtcgttgttgccactgaagcatcctggacggacagacttgggcactc 22523256
>dbj|AP004586.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0493A04 Length = 149367 Score = 44.1 bits (22), Expect = 0.34 Identities = 46/54 (85%) Strand = Plus / Plus Query: 340 tgcactcgtcattgttgccgctgaagcatccaggatgggcagtcttgggaactc 393 |||| ||||| |||||||| ||||||||||| ||| || ||| |||||| |||| Sbjct: 118131 tgcaatcgtcgttgttgccactgaagcatcctggacggacagacttgggcactc 118184
>dbj|AK101386.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033036F14, full insert sequence Length = 1107 Score = 44.1 bits (22), Expect = 0.34 Identities = 46/54 (85%) Strand = Plus / Minus Query: 340 tgcactcgtcattgttgccgctgaagcatccaggatgggcagtcttgggaactc 393 |||| ||||| |||||||| ||||||||||| ||| || ||| |||||| |||| Sbjct: 706 tgcaatcgtcgttgttgccactgaagcatcctggacggacagacttgggcactc 653
>dbj|AK060409.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-D09, full insert sequence Length = 1146 Score = 44.1 bits (22), Expect = 0.34 Identities = 46/54 (85%) Strand = Plus / Minus Query: 340 tgcactcgtcattgttgccgctgaagcatccaggatgggcagtcttgggaactc 393 |||| ||||| |||||||| ||||||||||| ||| || ||| |||||| |||| Sbjct: 780 tgcaatcgtcgttgttgccactgaagcatcctggacggacagacttgggcactc 727
>gb|AY110381.1| Zea mays CL51673_1 mRNA sequence Length = 1111 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 345 tcgtcattgttgccgctgaagcatcc 370 |||||||||||||| ||||||||||| Sbjct: 369 tcgtcattgttgccactgaagcatcc 394
>gb|AC146164.3| Pan troglodytes BAC clone RP43-24F8 from 7, complete sequence Length = 180141 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 ttcagttacacaaaatgcata 68 ||||||||||||||||||||| Sbjct: 118418 ttcagttacacaaaatgcata 118438
>gb|AC149132.1| Pan troglodytes chromosome X clone PTB-099J01 map human ortholog p22.12 complete sequence Length = 215862 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 37151 tgaaatggcgccactgcactc 37131
>gb|AC092606.2| Homo sapiens BAC clone RP11-150B23 from 7, complete sequence Length = 163437 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 ttcagttacacaaaatgcata 68 ||||||||||||||||||||| Sbjct: 52085 ttcagttacacaaaatgcata 52105
>gb|AC012184.7| Homo sapiens chromosome 16 clone RP11-529K1, complete sequence Length = 196010 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 93867 tgaaatggcgccactgcactc 93887
>ref|NM_018332.3| Homo sapiens DEAD (Asp-Glu-Ala-As) box polypeptide 19A (DDX19A), mRNA Length = 2918 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 2703 tgaaatggcgccactgcactc 2723
>emb|AL732366.7| Human DNA sequence from clone RP11-393H10 on chromosome X Contains a novel gene (FLJ14503), the EIF1A gene for eukaryotic translation initiation factor 1A (EIF4C, EIF1AX, eIF-1A, eIF-4C), the 3' end of the RPS6KA3 gene for ribosomal protein S6 kinase, 90kDa, polypeptide 3 (RSK, HU-2, HU-3, RSK2, MRX19, ISPK-1, MAPKAPK1B), a novel gene and three CpG islands, complete sequence Length = 187275 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 134596 tgaaatggcgccactgcactc 134576
>emb|AL591718.14| Human DNA sequence from clone RP11-399A15 on chromosome 6 Contains the 5' end of HCRTR2 gene for hypocretin (orexin) receptor 2, complete sequence Length = 159698 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 153692 tgaaatggcgccactgcactc 153672
>emb|AL390205.17| Human DNA sequence from clone RP11-15H7 on chromosome 6 Contains an ATP synthase H+ transporting mitochondrial F0 complex subunit b variant 1 (ATP5F1) pseudogene and a thyroid hormone receptor interactor 4 (TRIP4) pseudogene, complete sequence Length = 155680 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 75433 tgaaatggcgccactgcactc 75413
>emb|AL390057.12| Human DNA sequence from clone RP11-26I18 on chromosome 6, complete sequence Length = 100578 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 62337 tgaaatggcgccactgcactc 62317
>emb|AL359677.19| Human DNA sequence from clone RP11-523E20 on chromosome 10, complete sequence Length = 118452 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 4456 tgaaatggcgccactgcactc 4436
>emb|AL354853.12| Human DNA sequence from clone RP11-555F9 on chromosome 9q22.1-22.33 Contains the 5' end of a novel gene and the 3' end of a novel gene, complete sequence Length = 176422 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 85253 tgaaatggcgccactgcactc 85233
>emb|AL162742.9| Human DNA sequence from clone RP11-127L20 on chromosome 10 Contains the gene for a novel glutathione-S-transferase gene(LOC119391), a novel gene (KIAA1754), the 5'end of a novel gene (FLJ35908), two novel genes and two CpG islands, complete sequence Length = 178428 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 51632 tgaaatggcgccactgcactc 51652
>gb|AC023951.19| Homo sapiens chromosome 15, clone RP11-815C16, complete sequence Length = 186341 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 176586 tgaaatggcgccactgcactc 176606
>emb|AL133480.9| Human DNA sequence from clone RP11-307L3 on chromosome 9p23-24.3 Contains a selenoprotein T (LOC51714) pseudogene, the gene for a novel protein kinase (NYD-SP25), the 5' end of the gene for ubiquitin-like, containing PHD and RING finger domains 2 (URF2), a novel gene and a CpG island, complete sequence Length = 189672 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 169485 tgaaatggcgccactgcactc 169505
>emb|AL050341.18|HSDJ39G22 Human DNA sequence from clone RP1-39G22 on chromosome 1p32.1-34.3 Contains the 3' end of the RLF gene for rearranged L-myc fusion sequence, the gene for a novel protein, the ZMPSTE24 gene for zinc metalloproteinase (STE24 homolog, yeast), a pseudogene similar to part of RIO kinase 2 (yeast) (RIOK2), the COL9A2 gene for collagen, type IX, alpha 2 and a CpG island, complete sequence Length = 101685 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 64878 tgaaatggcgccactgcactc 64858
>gb|AC110285.14| Homo sapiens chromosome 17, clone RP11-1055B8, complete sequence Length = 119991 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 38659 tgaaatggcgccactgcactc 38679
>emb|AL832970.1|HSM804281 Homo sapiens mRNA; cDNA DKFZp666D212 (from clone DKFZp666D212) Length = 2925 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 2706 tgaaatggcgccactgcactc 2726
>gb|BC005162.2| Homo sapiens DEAD (Asp-Glu-Ala-As) box polypeptide 19A, mRNA (cDNA clone MGC:4651 IMAGE:3530064), complete cds Length = 2918 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 2703 tgaaatggcgccactgcactc 2723
>gb|BC006544.2| Homo sapiens DEAD (Asp-Glu-Ala-As) box polypeptide 19A, mRNA (cDNA clone MGC:2395 IMAGE:2964377), complete cds Length = 2918 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 2703 tgaaatggcgccactgcactc 2723
>emb|CR388089.8| Zebrafish DNA sequence from clone CH211-87C14, complete sequence Length = 165808 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 39 aaggtcaatttcagttacacaaaat 63 |||||||||||||||||| |||||| Sbjct: 113906 aaggtcaatttcagttactcaaaat 113882
>gb|AC021937.7| Homo sapiens chromosome 8, clone RP11-812B1, complete sequence Length = 164435 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 150187 tgaaatggcgccactgcactc 150207
>gb|AC073593.13| Homo sapiens 12 BAC RP11-13J12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 153299 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 2516 tgaaatggcgccactgcactc 2496
>emb|AL832901.1|HSM804212 Homo sapiens mRNA; cDNA DKFZp762C1313 (from clone DKFZp762C1313) Length = 2489 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 2279 tgaaatggcgccactgcactc 2299
>gb|AC027319.5| Homo sapiens chromosome 19 clone CTC-518P12, complete sequence Length = 152033 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 127949 tgaaatggcgccactgcactc 127929
>emb|CR749227.1| Homo sapiens mRNA; cDNA DKFZp686C21137 (from clone DKFZp686C21137) Length = 3082 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 2869 tgaaatggcgccactgcactc 2889
>gb|AC113266.24| Papio anubis clone rp41-106a4, complete sequence Length = 193032 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 124737 tgaaatggcgccactgcactc 124717
>gb|AC117522.2| Homo sapiens chromosome 5 clone RP11-1072N2, complete sequence Length = 170219 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 161831 tgaaatggcgccactgcactc 161851
>dbj|AK057071.1| Homo sapiens cDNA FLJ32509 fis, clone SMINT1000054 Length = 2438 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 829 tgaaatggcgccactgcactc 809
>gb|AC114942.2| Homo sapiens chromosome 5 clone CTD-2327J4, complete sequence Length = 118067 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 54339 tgaaatggcgccactgcactc 54359
>gb|AC015989.11| Homo sapiens chromosome 18, clone RP11-215A20, complete sequence Length = 184092 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 114372 tgaaatggcgccactgcactc 114392
>gb|AC034234.4| Homo sapiens chromosome 5 clone CTD-2254N19, complete sequence Length = 120295 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 324 gttgaaatggcgccactgcac 344 ||||||||||||||||||||| Sbjct: 49730 gttgaaatggcgccactgcac 49750
>gb|AY062031.1| Homo sapiens hypocretin receptor 2 (HCRTR2) gene, complete cds Length = 168575 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 30590 tgaaatggcgccactgcactc 30570
>gb|AC040965.8| Homo sapiens chromosome 8, clone RP11-481K20, complete sequence Length = 189188 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 176933 tgaaatggcgccactgcactc 176953
>gb|AC092809.2| Homo sapiens chromosome 1 clone RP11-365O16, complete sequence Length = 197621 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 182427 tgaaatggcgccactgcactc 182447
>gb|AC009309.4| Homo sapiens BAC clone RP11-301O19 from 2, complete sequence Length = 170720 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 28711 tgaaatggcgccactgcactc 28691
>gb|AC096727.3| Homo sapiens BAC clone RP11-35D5 from 4, complete sequence Length = 157078 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 7869 tgaaatggcgccactgcactc 7889
>gb|AC093491.3| Homo sapiens chromosome 16 clone RP11-410N2, complete sequence Length = 162176 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 39040 tgaaatggcgccactgcactc 39020
>gb|AC016776.6| Homo sapiens BAC clone RP11-574K22 from 2, complete sequence Length = 197425 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 25012 tgaaatggcgccactgcactc 25032
>gb|AC099790.3| Homo sapiens chromosome 1 clone RP11-397G23, complete sequence Length = 213942 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 11420 tgaaatggcgccactgcactc 11440
>gb|AC010553.6|AC010553 Homo sapiens chromosome 16 clone RP11-59D8, complete sequence Length = 85543 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 48143 tgaaatggcgccactgcactc 48123
>dbj|AP003475.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB2021C9 Length = 147261 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 4832 tgaaatggcgccactgcactc 4812
>gb|AC004663.1|AC004663 Homo sapiens chromosome 19, cosmid R29783, complete sequence Length = 41150 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 5208 tgaaatggcgccactgcactc 5188
>dbj|AB209401.1| Homo sapiens mRNA for DDX19-like protein variant protein Length = 5011 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 4816 tgaaatggcgccactgcactc 4836
>dbj|AP004291.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1361H8 Length = 158755 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 tgaaatggcgccactgcactc 346 ||||||||||||||||||||| Sbjct: 136708 tgaaatggcgccactgcactc 136688
>gb|AC004501.1| Homo sapiens chromosome 20, BAC clone 121 (LBNL H144), complete sequence Length = 39507 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 38775 gaaatggcgccactgcactc 38756
>gb|AC087632.10| Homo sapiens chromosome 15, clone RP11-236P11, complete sequence Length = 143511 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 6314 gaaatggcgccactgcactc 6333
>gb|AC122272.4| Mus musculus BAC clone RP23-225J2 from 6, complete sequence Length = 208684 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 tgaagtaaagacactgcaac 191 |||||||||||||||||||| Sbjct: 9876 tgaagtaaagacactgcaac 9895
>gb|AC145883.2| Pan troglodytes BAC clone RP43-20G17 from 7, complete sequence Length = 221255 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 165052 gaaatggcgccactgcactc 165033
>ref|XM_664652.1| Plasmodium berghei strain ANKA hypothetical protein (PB107355.00.0) partial mRNA Length = 397 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gttacacaaaatgcatagac 71 |||||||||||||||||||| Sbjct: 142 gttacacaaaatgcatagac 161
>ref|XM_666517.1| Plasmodium berghei strain ANKA hypothetical protein (PB405690.00.0) partial mRNA Length = 999 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gttacacaaaatgcatagac 71 |||||||||||||||||||| Sbjct: 113 gttacacaaaatgcatagac 132
>ref|XM_673012.1| Plasmodium berghei strain ANKA hypothetical protein (PB105464.00.0) partial mRNA Length = 1482 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gttacacaaaatgcatagac 71 |||||||||||||||||||| Sbjct: 125 gttacacaaaatgcatagac 144
>ref|XM_675083.1| Plasmodium berghei strain ANKA hypothetical protein (PB100034.00.0) partial mRNA Length = 1314 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gttacacaaaatgcatagac 71 |||||||||||||||||||| Sbjct: 506 gttacacaaaatgcatagac 525
>emb|AL731563.9| Human DNA sequence from clone RP11-344N10 on chromosome 10 Contains the P4HA1 gene for procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase) alpha polypeptide I, a novel gene, a novel pseudogene, a ribosomal protein L17 (RPL17) pseudogene and a CpG island, complete sequence Length = 129559 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 73796 gaaatggcgccactgcactc 73815
>emb|AL590609.15| Human DNA sequence from clone RP11-4M23 on chromosome 1 Contains the 5' end of the FUCA1 gene for alpha-L- 1 fucosidase (tissue), the CNR2 gene for cannabinoid receptor 2 (macrophage), a BTB (POZ) domain-containing 6 (BTBD6) pseudogene, a novel gene, an H3 histone family 3A (H3F3A) pseudogene, the PNRC2 gene for proline-rich nuclear receptor coactivator 2, the FUS1P1 gene for FUS interacting protein (serine-arginine rich) 1, a ribosomal protein L36 (RPL36) pseudogene and seven CpG islands, complete sequence Length = 172307 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 71436 gaaatggcgccactgcactc 71417
>emb|AL512510.13| Human DNA sequence from clone RP11-537P24 on chromosome 6 Contains a CpG island, complete sequence Length = 170970 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 140021 gaaatggcgccactgcactc 140040
>emb|AL451055.9| Human DNA sequence from clone RP11-203O18 on chromosome 6, complete sequence Length = 25676 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 15536 gaaatggcgccactgcactc 15517
>emb|AL357131.27| Human DNA sequence from clone RP11-288G13 on chromosome 1 Contains the PCTK3 gene for PCTAIRE protein kinase 3, complete sequence Length = 46621 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 19707 gaaatggcgccactgcactc 19688
>emb|AL358113.21| Human DNA sequence from clone RP11-16N10 on chromosome 9q13-21.33 Contains the TJP2 gene for tight junction protein 2 (zona occludens 2) (X104, ZO-2) and two CpG islands, complete sequence Length = 129719 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 111680 gaaatggcgccactgcactc 111661
>emb|AL357376.16| Human DNA sequence from clone RP11-43G16 on chromosome 6, complete sequence Length = 45386 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 aatttcagttacacaaaatg 64 |||||||||||||||||||| Sbjct: 24530 aatttcagttacacaaaatg 24549
>emb|AL355586.27| Human DNA sequence from clone RP11-59I9 on chromosome 6q16.3-21 Contains two novel genes, the 3' end of the C6orf210 gene for chromosome 6 open reading frame 210 and three CpG islands, complete sequence Length = 185311 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 71470 gaaatggcgccactgcactc 71451
>emb|AL161613.23| Human DNA sequence from clone RP11-22J15 on chromosome 13 Contains the 5' end of the LATS2 gene for LATS, large tumor suppressor, homolog 2 (LATS (large tumor suppressor, Drosophila) homolog 2), a ribosomal protein S12 (40S ribosomal protein S12) (RPS12) pseudogene, a chromosome 9 open reading frame 12 (C9orf12) (INSP5K2, FLJ13161)pseudogene and two CpG islands, complete sequence Length = 113372 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 40528 gaaatggcgccactgcactc 40547
>emb|AL137248.21| Human DNA sequence from clone RP11-316G23 on chromosome 13q12.1-12.3, complete sequence Length = 186343 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 30638 gaaatggcgccactgcactc 30619
>emb|AL138741.13| Human DNA sequence from clone RP3-516D24 on chromosome 6, complete sequence Length = 67372 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 26911 gaaatggcgccactgcactc 26930
>gb|AC091231.10| Homo sapiens chromosome 15, clone RP11-702L15, complete sequence Length = 187779 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 107304 gaaatggcgccactgcactc 107323
>gb|AC183798.2| Pan troglodytes BAC clone CH251-424F21 from chromosome 7, complete sequence Length = 153775 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 110718 gaaatggcgccactgcactc 110699
>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2234072 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 gcagtcacaccggttgaaat 331 |||||||||||||||||||| Sbjct: 259021 gcagtcacaccggttgaaat 259002
>gb|AC162382.8| Mus musculus 6 BAC RP24-398M13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 200253 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 tgaagtaaagacactgcaac 191 |||||||||||||||||||| Sbjct: 21136 tgaagtaaagacactgcaac 21117
>gb|AC055845.15| Homo sapiens chromosome 11, clone RP11-682B13, complete sequence Length = 155304 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 74499 gaaatggcgccactgcactc 74480
>gb|AC010319.10| Homo sapiens chromosome 19 clone CTD-2521M24, complete sequence Length = 141370 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 108304 gaaatggcgccactgcactc 108323
>gb|AC022276.35| Homo sapiens 12 BAC RP11-161A14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177505 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 aatttcagttacacaaaatg 64 |||||||||||||||||||| Sbjct: 145305 aatttcagttacacaaaatg 145286
>gb|AC011120.11| Homo sapiens chromosome 17, clone RP11-171G2, complete sequence Length = 167746 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 48668 gaaatggcgccactgcactc 48649
>gb|AC112777.7| Homo sapiens 12 BAC RP11-424C20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160380 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 3950 gaaatggcgccactgcactc 3931
>gb|AC010619.7| Homo sapiens chromosome 19 clone CTD-3148I10, complete sequence Length = 179394 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 131223 gaaatggcgccactgcactc 131242
>gb|AC087045.7| Homo sapiens chromosome 8, clone CTD-2342N23, complete sequence Length = 121280 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 72693 gaaatggcgccactgcactc 72712
>gb|AC022861.4| Homo sapiens chromosome 8, clone RP11-343B22, complete sequence Length = 148064 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 68401 gaaatggcgccactgcactc 68420
>gb|AC093484.2| Homo sapiens chromosome , clone RP11-138I1, complete sequence Length = 170944 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 166023 gaaatggcgccactgcactc 166004
>gb|AC009626.9| Homo sapiens, clone RP11-319N16, complete sequence Length = 182133 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 24057 gaaatggcgccactgcactc 24038
>gb|AC009027.10| Homo sapiens chromosome 16 clone RP11-123C5, complete sequence Length = 178256 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 41831 gaaatggcgccactgcactc 41812
>gb|AC025171.8| Homo sapiens chromosome 5 clone CTD-2035E11, complete sequence Length = 142037 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 57679 gaaatggcgccactgcactc 57660
>gb|AC019179.4|AC019179 Homo sapiens BAC clone RP11-240A16 from 4, complete sequence Length = 196721 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 140929 gaaatggcgccactgcactc 140948
>gb|AC007038.6| Homo sapiens BAC clone RP11-260M2 from 2, complete sequence Length = 99031 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 79439 gaaatggcgccactgcactc 79420
>gb|AC009131.6|AC009131 Homo sapiens chromosome 16 clone RP11-502K10, complete sequence Length = 180835 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 126371 gaaatggcgccactgcactc 126352
>gb|AC007606.8| Homo sapiens chromosome 16 clone RP11-35P16, complete sequence Length = 157477 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 134797 gaaatggcgccactgcactc 134816
>gb|AC108016.5| Homo sapiens BAC clone RP13-1015A13 from 4, complete sequence Length = 162715 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 35704 gaaatggcgccactgcactc 35685
>gb|AC019186.9| Homo sapiens BAC clone RP11-301K6 from 2, complete sequence Length = 167101 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 30876 gaaatggcgccactgcactc 30895
>gb|AC023830.9| Homo sapiens chromosome 16 clone RP11-709D24, complete sequence Length = 182662 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 55917 gaaatggcgccactgcactc 55936
>dbj|BS000201.1| Pan troglodytes chromosome 22 clone:PTB-047A24, map 22, complete sequences Length = 165662 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 152764 gaaatggcgccactgcactc 152783
>emb|AL049869.6|CNS0000P Human chromosome 14 DNA sequence BAC R-973N13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 195840 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 173401 gaaatggcgccactgcactc 173382
>dbj|AP001725.1| Homo sapiens genomic DNA, chromosome 21q, section 69/105 Length = 340000 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 55801 gaaatggcgccactgcactc 55820
>gb|AC006261.1|AC006261 Homo sapiens chromosome 19, cosmid R32889, complete sequence Length = 38852 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 19295 gaaatggcgccactgcactc 19314
>dbj|AP000797.6| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-36B5, complete sequence Length = 148490 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 970 gaaatggcgccactgcactc 989
>dbj|AP002991.3| Homo sapiens genomic DNA, chromosome 11 clone:CTC-774J1, complete sequence Length = 167901 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 112954 gaaatggcgccactgcactc 112973
>emb|BX511012.5| Human DNA sequence from clone RP4-737A14 on chromosome 1, complete sequence Length = 106433 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 8228 gaaatggcgccactgcactc 8209
>emb|AL109767.7|CNS018OX Human chromosome 14 DNA sequence BAC R-889B13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 184039 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 52739 gaaatggcgccactgcactc 52758
>emb|AL132819.6|CNS01DTO Human chromosome 14 DNA sequence BAC C-2200A16 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 140073 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 77636 gaaatggcgccactgcactc 77655
>emb|AJ342883.1|HSA342883 Homo sapiens genomic sequence surrounding NotI site, clone NL4-DH21R Length = 743 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 473 gaaatggcgccactgcactc 454
>gb|AC080037.11| Homo sapiens chromosome 17, clone CTD-3010D24, complete sequence Length = 248996 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 155797 gaaatggcgccactgcactc 155778
>gb|AC068644.15| Homo sapiens 3 BAC RP11-315J22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178688 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 174176 gaaatggcgccactgcactc 174195
>dbj|AP000689.1| Homo sapiens genomic DNA, chromosome 21q22.2, BAC clone:KB795B7, CBR1-HLCS region Length = 126546 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 66790 gaaatggcgccactgcactc 66809
>dbj|AB003151.1| Homo sapiens DNA, chromosome 21q22.2, PAC clone 25P16 complete sequence, encoding carbonyl reductase and carbonyl reductase 3 (complete cds) Length = 170529 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gaaatggcgccactgcactc 346 |||||||||||||||||||| Sbjct: 144812 gaaatggcgccactgcactc 144831 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,845,222 Number of Sequences: 3902068 Number of extensions: 3845222 Number of successful extensions: 179075 Number of sequences better than 10.0: 111 Number of HSP's better than 10.0 without gapping: 111 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 178211 Number of HSP's gapped (non-prelim): 864 length of query: 393 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 371 effective length of database: 17,147,199,772 effective search space: 6361611115412 effective search space used: 6361611115412 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
