ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet29g09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X63052.1|HVCP29 Hordeum vulgare gene for CP29 precursor for ... 628 e-177
2gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome... 176 3e-41
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 176 3e-41
4dbj|AK104824.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 3e-41
5dbj|AK098872.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 3e-41
6dbj|AK061295.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 3e-41
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 176 3e-41
8dbj|D85512.1| Oryza sativa (japonica cultivar-group) CP26 mRNA, ... 176 3e-41
9gb|AY105650.1| Zea mays PCO135935 mRNA sequence 167 3e-38
10gb|U23188.1|ZMU23188 Zea mays chlorophyll a/b-binding apoprotein... 167 3e-38
11gb|U23189.1|ZMU23189 Zea mays chlorophyll a/b-binding apoprotein... 145 1e-31
12gb|AY855171.1| Eleusine coracana subsp. coracana clone 1 light h... 129 6e-27
13gb|BT014450.1| Lycopersicon esculentum clone 133776F, mRNA sequence 50 0.004
14emb|X61287.1|LECAB9 L.esculentum Cab9 gene for type I (26 kD) CP... 50 0.004
15dbj|AB050007.2| Chlamydomonas reinhardtii lhcb5 mRNA for CP26, c... 46 0.068
16gb|AC145591.5| Mus musculus BAC clone RP24-176N2 from chromosome... 42 1.1
17dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
18dbj|AP003629.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
19gb|U25812.1|PSU25812 Pseudomonas syringae pv. syringae hrp gene ... 42 1.1
20gb|AC139637.17| Mus musculus chromosome 15, clone RP24-253M12, c... 40 4.2
21ref|NM_001039970.1| Homo sapiens protein tyrosine phosphatase, n... 40 4.2
22ref|NM_032781.3| Homo sapiens protein tyrosine phosphatase, non-... 40 4.2
23ref|NM_006906.1| Homo sapiens protein tyrosine phosphatase, non-... 40 4.2
24gb|AC142474.4| Mus musculus BAC clone RP24-362N7 from chromosome... 40 4.2
25ref|XM_883654.1| Candida albicans SC5314 hypothetical protein (C... 40 4.2
26ref|XM_707383.1| Candida albicans SC5314 potential guanine nucle... 40 4.2
27gb|BC046435.1| Homo sapiens protein tyrosine phosphatase, non-re... 40 4.2
28gb|BC064807.1| Homo sapiens protein tyrosine phosphatase, non-re... 40 4.2
29gb|BC039897.1| Homo sapiens protein tyrosine phosphatase, non-re... 40 4.2
30emb|AL832541.1|HSM803850 Homo sapiens mRNA; cDNA DKFZp547A0817 (... 40 4.2
31emb|AL806524.10| Mouse DNA sequence from clone RP23-158E10 on ch... 40 4.2
32gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 4.2
33dbj|AK127312.1| Homo sapiens cDNA FLJ45381 fis, clone BRHIP30210... 40 4.2
34dbj|AK090923.1| Homo sapiens cDNA FLJ33604 fis, clone BRAMY20152... 40 4.2
35dbj|AK027333.1| Homo sapiens cDNA FLJ14427 fis, clone HEMBA1006173 40 4.2
36dbj|AK055450.1| Homo sapiens cDNA FLJ30888 fis, clone FEBRA20050... 40 4.2
37gb|AC103974.6| Homo sapiens chromosome 11, clone RP11-1081L13, c... 40 4.2
38emb|BX530075.7| Zebrafish DNA sequence from clone CH211-1O14 in ... 40 4.2
39dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
40emb|AL731618.3|OSJN00269 Oryza sativa genomic DNA, chromosome 4,... 40 4.2
41gb|BC047349.1| Mus musculus, clone IMAGE:3595895, mRNA 40 4.2
42dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 4.2
43dbj|AB060245.1| Macaca fascicularis brain cDNA clone:QflA-15249,... 40 4.2
44gb|U68715.1|BFU68715 Botryotinia fuckeliana endopolygalacturonas... 40 4.2
45dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, comp... 40 4.2
46emb|AL390254.6|CNS06C7M Human chromosome 14 DNA sequence BAC R-9... 40 4.2
47gb|M12152.1|LGIAB19A Lemna gibba chlorophyll a/b apoprotein gene... 40 4.2 
>emb|X63052.1|HVCP29 Hordeum vulgare gene for CP29 precursor for core chlorophyll a/b
            binding (CAB) protein of photosystem II (PSII)
          Length = 2689

 Score =  628 bits (317), Expect = e-177
 Identities = 317/317 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    ggtccgaaactcccatcagaaatcagaacggtcatgtttcttctgcccttgataatttac 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2436 ggtccgaaactcccatcagaaatcagaacggtcatgtttcttctgcccttgataatttac 2377

                                                                        
Query: 61   acgtacggcacattcgtactctcatacttttccccggtaaaattcacacagcacatcatg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2376 acgtacggcacattcgtactctcatacttttccccggtaaaattcacacagcacatcatg 2317

                                                                        
Query: 121  ctgcatcgcacgcacgcatgcagctgagcatcaacagccgacggcggcggacgggcaatc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2316 ctgcatcgcacgcacgcatgcagctgagcatcaacagccgacggcggcggacgggcaatc 2257

                                                                        
Query: 181  aacggccagctcacaggctgggcaccctctcggcggcgccggagatgacggtgagcaggt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2256 aacggccagctcacaggctgggcaccctctcggcggcgccggagatgacggtgagcaggt 2197

                                                                        
Query: 241  tgttgccgaaggggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggtga 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2196 tgttgccgaaggggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggtga 2137

                             
Query: 301  cgtaggcctggatgaag 317
            |||||||||||||||||
Sbjct: 2136 cgtaggcctggatgaag 2120



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                          
Query: 1    ggtccgaaactcccatcagaaatcagaacg 30
            ||||||||||||||||||||||||||||||
Sbjct: 2503 ggtccgaaactcccatcagaaatcagaacg 2474
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>gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0091I11, complete sequence
          Length = 135993

 Score =  176 bits (89), Expect = 3e-41
 Identities = 116/125 (92%)
 Strand = Plus / Minus

                                                                         
Query: 193   acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 252
             |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40261 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 40202

                                                                         
Query: 253   ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggtgacgtaggcctgga 312
             |||||||||||||   | | |||||||||| ||| |||||||||||||||||||||||||
Sbjct: 40201 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccggtgacgtaggcctgga 40142

                  
Query: 313   tgaag 317
             |||||
Sbjct: 40141 tgaag 40137
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  176 bits (89), Expect = 3e-41
 Identities = 116/125 (92%)
 Strand = Plus / Minus

                                                                           
Query: 193     acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 252
               |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7581175 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 7581116

                                                                           
Query: 253     ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggtgacgtaggcctgga 312
               |||||||||||||   | | |||||||||| ||| |||||||||||||||||||||||||
Sbjct: 7581115 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccggtgacgtaggcctgga 7581056

                    
Query: 313     tgaag 317
               |||||
Sbjct: 7581055 tgaag 7581051
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>dbj|AK104824.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F05, full
           insert sequence
          Length = 1157

 Score =  176 bits (89), Expect = 3e-41
 Identities = 116/125 (92%)
 Strand = Plus / Minus

                                                                       
Query: 193 acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 252
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 881

                                                                       
Query: 253 ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggtgacgtaggcctgga 312
           |||||||||||||   | | |||||||||| ||| |||||||||||||||||||||||||
Sbjct: 880 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccggtgacgtaggcctgga 821

                
Query: 313 tgaag 317
           |||||
Sbjct: 820 tgaag 816
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>dbj|AK098872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001B10, full
           insert sequence
          Length = 1101

 Score =  176 bits (89), Expect = 3e-41
 Identities = 116/125 (92%)
 Strand = Plus / Minus

                                                                       
Query: 193 acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 252
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 871

                                                                       
Query: 253 ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggtgacgtaggcctgga 312
           |||||||||||||   | | |||||||||| ||| |||||||||||||||||||||||||
Sbjct: 870 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccggtgacgtaggcctgga 811

                
Query: 313 tgaag 317
           |||||
Sbjct: 810 tgaag 806
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>dbj|AK061295.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D05, full
           insert sequence
          Length = 1186

 Score =  176 bits (89), Expect = 3e-41
 Identities = 116/125 (92%)
 Strand = Plus / Minus

                                                                       
Query: 193 acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 252
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 882

                                                                       
Query: 253 ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggtgacgtaggcctgga 312
           |||||||||||||   | | |||||||||| ||| |||||||||||||||||||||||||
Sbjct: 881 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccggtgacgtaggcctgga 822

                
Query: 313 tgaag 317
           |||||
Sbjct: 821 tgaag 817
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  176 bits (89), Expect = 3e-41
 Identities = 116/125 (92%)
 Strand = Plus / Minus

                                                                           
Query: 193     acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 252
               |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7651262 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 7651203

                                                                           
Query: 253     ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggtgacgtaggcctgga 312
               |||||||||||||   | | |||||||||| ||| |||||||||||||||||||||||||
Sbjct: 7651202 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccggtgacgtaggcctgga 7651143

                    
Query: 313     tgaag 317
               |||||
Sbjct: 7651142 tgaag 7651138
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>dbj|D85512.1| Oryza sativa (japonica cultivar-group) CP26 mRNA, partial sequence
          Length = 556

 Score =  176 bits (89), Expect = 3e-41
 Identities = 116/125 (92%)
 Strand = Plus / Minus

                                                                       
Query: 193 acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 252
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 336

                                                                       
Query: 253 ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggtgacgtaggcctgga 312
           |||||||||||||   | | |||||||||| ||| |||||||||||||||||||||||||
Sbjct: 335 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccggtgacgtaggcctgga 276

                
Query: 313 tgaag 317
           |||||
Sbjct: 275 tgaag 271
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>gb|AY105650.1| Zea mays PCO135935 mRNA sequence
          Length = 1366

 Score =  167 bits (84), Expect = 3e-38
 Identities = 117/128 (91%)
 Strand = Plus / Minus

                                                                        
Query: 190  ctcacaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccga 249
            ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 ctcacaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccga 969

                                                                        
Query: 250  aggggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggtgacgtaggcct 309
            ||||||||||||||||   |   |||||||||| ||| || |||||||||||||||||||
Sbjct: 968  aggggtcgctgaggtgcttggcgaggttctcgacggggccttcgccggtgacgtaggcct 909

                    
Query: 310  ggatgaag 317
            ||||||||
Sbjct: 908  ggatgaag 901
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>gb|U23188.1|ZMU23188 Zea mays chlorophyll a/b-binding apoprotein CP26 (Lhcb5-1) mRNA,
           complete cds
          Length = 957

 Score =  167 bits (84), Expect = 3e-38
 Identities = 117/128 (91%)
 Strand = Plus / Minus

                                                                       
Query: 190 ctcacaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccga 249
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 ctcacaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccga 827

                                                                       
Query: 250 aggggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggtgacgtaggcct 309
           ||||||||||||||||   |   |||||||||| ||| || |||||||||||||||||||
Sbjct: 826 aggggtcgctgaggtgcttggcgaggttctcgacggggccttcgccggtgacgtaggcct 767

                   
Query: 310 ggatgaag 317
           ||||||||
Sbjct: 766 ggatgaag 759
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>gb|U23189.1|ZMU23189 Zea mays chlorophyll a/b-binding apoprotein CP26 (Lhcb5-2) mRNA,
           complete cds
          Length = 1073

 Score =  145 bits (73), Expect = 1e-31
 Identities = 112/125 (89%)
 Strand = Plus / Minus

                                                                       
Query: 193 acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 252
           ||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 acaggctaggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 822

                                                                       
Query: 253 ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggtgacgtaggcctgga 312
           |||||||||||||   |   |||||||| | ||| || ||||||||||||||||||||||
Sbjct: 821 ggtcgctgaggtgcttggcgaggttctccacggggccttcgccggtgacgtaggcctgga 762

                
Query: 313 tgaag 317
           |||||
Sbjct: 761 tgaag 757
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>gb|AY855171.1| Eleusine coracana subsp. coracana clone 1 light harvesting protein
           mRNA, partial cds
          Length = 364

 Score =  129 bits (65), Expect = 6e-27
 Identities = 107/121 (88%)
 Strand = Plus / Minus

                                                                       
Query: 193 acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 252
           ||||||||||  ||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 193 acaggctgggtgccctctcggcggcaccagagatgacggtgagcaggttgttgccgaagg 134

                                                                       
Query: 253 ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggtgacgtaggcctgga 312
           |||||||||||||   |   |||||||||| ||| ||| |||| ||||||||||||||||
Sbjct: 133 ggtcgctgaggtgcttggcgaggttctcgacgggacccccgcctgtgacgtaggcctgga 74

            
Query: 313 t 313
           |
Sbjct: 73  t 73



 Score = 44.1 bits (22), Expect = 0.27
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 48  cttgataatttacacgtacggcacattcgtactctcat 85
           |||||||||||||||| |||| ||||||  ||||||||
Sbjct: 319 cttgataatttacacgcacggtacattcagactctcat 282
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>gb|BT014450.1| Lycopersicon esculentum clone 133776F, mRNA sequence
          Length = 1196

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 224 gatgacggtgagcaggttgttgccgaaggggtc 256
           |||||||||||||| ||||||||| ||||||||
Sbjct: 907 gatgacggtgagcaagttgttgccaaaggggtc 875
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>emb|X61287.1|LECAB9 L.esculentum Cab9 gene for type I (26 kD) CP29 polypeptide
          Length = 2327

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 224  gatgacggtgagcaggttgttgccgaaggggtc 256
            |||||||||||||| ||||||||| ||||||||
Sbjct: 1939 gatgacggtgagcaagttgttgccaaaggggtc 1907
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>dbj|AB050007.2| Chlamydomonas reinhardtii lhcb5 mRNA for CP26, complete cds
          Length = 952

 Score = 46.1 bits (23), Expect = 0.068
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 227 gacggtgagcaggttgttgccgaaggggtcg 257
           |||||| |||||||||| |||||||||||||
Sbjct: 883 gacggtcagcaggttgtagccgaaggggtcg 853
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>gb|AC145591.5| Mus musculus BAC clone RP24-176N2 from chromosome 18, complete sequence
          Length = 167532

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 100   aaattcacacagcacatcatg 120
             |||||||||||||||||||||
Sbjct: 74556 aaattcacacagcacatcatg 74536
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 211      cggcggcgccggagatgacgg 231
                |||||||||||||||||||||
Sbjct: 23574580 cggcggcgccggagatgacgg 23574600
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>dbj|AP003629.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0481H08
          Length = 146841

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 211   cggcggcgccggagatgacgg 231
             |||||||||||||||||||||
Sbjct: 55544 cggcggcgccggagatgacgg 55564
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>gb|U25812.1|PSU25812 Pseudomonas syringae pv. syringae hrp gene cluster, hrpU, hrpW,
           hrpO, hrpX, and hrpY genes, complete cds, and hrpU2,
           partial cds
          Length = 3672

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 228 acggtgagcaggttgttgccgaagg 252
           ||||||||||||| |||||||||||
Sbjct: 488 acggtgagcaggtggttgccgaagg 512
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>gb|AC139637.17| Mus musculus chromosome 15, clone RP24-253M12, complete sequence
          Length = 136076

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   caggctgggcaccctctcgg 213
             ||||||||||||||||||||
Sbjct: 97871 caggctgggcaccctctcgg 97852
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>ref|NM_001039970.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 5
            (striatum-enriched) (PTPN5), transcript variant 3, mRNA
          Length = 3105

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  ctcacaggctgggcaccctc 209
            ||||||||||||||||||||
Sbjct: 2657 ctcacaggctgggcaccctc 2638
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>ref|NM_032781.3| Homo sapiens protein tyrosine phosphatase, non-receptor type 5
            (striatum-enriched) (PTPN5), transcript variant 2, mRNA
          Length = 3156

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  ctcacaggctgggcaccctc 209
            ||||||||||||||||||||
Sbjct: 2708 ctcacaggctgggcaccctc 2689
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>ref|NM_006906.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 5
            (striatum-enriched) (PTPN5), transcript variant 1, mRNA
          Length = 3201

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  ctcacaggctgggcaccctc 209
            ||||||||||||||||||||
Sbjct: 2753 ctcacaggctgggcaccctc 2734
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>gb|AC142474.4| Mus musculus BAC clone RP24-362N7 from chromosome 15, complete sequence
          Length = 172879

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 194    caggctgggcaccctctcgg 213
              ||||||||||||||||||||
Sbjct: 152256 caggctgggcaccctctcgg 152275
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>ref|XM_883654.1| Candida albicans SC5314 hypothetical protein (CaJ7.0138) partial
           mRNA
          Length = 936

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 238 ggttgttgccgaaggggtcgctga 261
           ||||| ||||||||||||||||||
Sbjct: 588 ggttggtgccgaaggggtcgctga 611
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>ref|XM_707383.1| Candida albicans SC5314 potential guanine nucleotide exchange
           factor eIF-2B alpha subunit (GCN3) partial mRNA
          Length = 936

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 238 ggttgttgccgaaggggtcgctga 261
           ||||| ||||||||||||||||||
Sbjct: 588 ggttggtgccgaaggggtcgctga 611
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>gb|BC046435.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 5
            (striatum-enriched), mRNA (cDNA clone IMAGE:5198635),
            partial cds
          Length = 1680

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  ctcacaggctgggcaccctc 209
            ||||||||||||||||||||
Sbjct: 1232 ctcacaggctgggcaccctc 1213
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>gb|BC064807.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 5
            (striatum-enriched), transcript variant 1, mRNA (cDNA
            clone MGC:65158 IMAGE:5726473), complete cds
          Length = 2947

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  ctcacaggctgggcaccctc 209
            ||||||||||||||||||||
Sbjct: 2517 ctcacaggctgggcaccctc 2498
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>gb|BC039897.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 5
            (striatum-enriched), mRNA (cDNA clone IMAGE:5196107),
            partial cds
          Length = 2860

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  ctcacaggctgggcaccctc 209
            ||||||||||||||||||||
Sbjct: 2416 ctcacaggctgggcaccctc 2397
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>emb|AL832541.1|HSM803850 Homo sapiens mRNA; cDNA DKFZp547A0817 (from clone DKFZp547A0817)
          Length = 3149

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  ctcacaggctgggcaccctc 209
            ||||||||||||||||||||
Sbjct: 2751 ctcacaggctgggcaccctc 2732
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>emb|AL806524.10| Mouse DNA sequence from clone RP23-158E10 on chromosome 4, complete
             sequence
          Length = 211513

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   tcacacagcacatcatgctg 123
             ||||||||||||||||||||
Sbjct: 62126 tcacacagcacatcatgctg 62107
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 218    gccggagatgacggtgagcaggttgttg 245
              |||||||||||||||||| | |||||||
Sbjct: 391992 gccggagatgacggtgaggatgttgttg 391965
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>dbj|AK127312.1| Homo sapiens cDNA FLJ45381 fis, clone BRHIP3021019, highly  similar
            to Protein-tyrosine phosphatase, non-receptor type 5 (EC
            3.1.3.48)
          Length = 3871

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  ctcacaggctgggcaccctc 209
            ||||||||||||||||||||
Sbjct: 3491 ctcacaggctgggcaccctc 3472
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>dbj|AK090923.1| Homo sapiens cDNA FLJ33604 fis, clone BRAMY2015251, highly similar to
            PROTEIN-TYROSINE PHOSPHATASE STRIATUM-ENRICHED (EC
            3.1.3.48)
          Length = 2965

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  ctcacaggctgggcaccctc 209
            ||||||||||||||||||||
Sbjct: 2617 ctcacaggctgggcaccctc 2598
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>dbj|AK027333.1| Homo sapiens cDNA FLJ14427 fis, clone HEMBA1006173
          Length = 1074

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 190 ctcacaggctgggcaccctc 209
           ||||||||||||||||||||
Sbjct: 694 ctcacaggctgggcaccctc 675
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>dbj|AK055450.1| Homo sapiens cDNA FLJ30888 fis, clone FEBRA2005079, highly similar to
            PROTEIN-TYROSINE PHOSPHATASE STRIATUM-ENRICHED (EC
            3.1.3.48)
          Length = 2299

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  ctcacaggctgggcaccctc 209
            ||||||||||||||||||||
Sbjct: 1919 ctcacaggctgggcaccctc 1900
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>gb|AC103974.6| Homo sapiens chromosome 11, clone RP11-1081L13, complete sequence
          Length = 189230

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 190    ctcacaggctgggcaccctc 209
              ||||||||||||||||||||
Sbjct: 153760 ctcacaggctgggcaccctc 153741
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>emb|BX530075.7| Zebrafish DNA sequence from clone CH211-1O14 in linkage group 5, complete
              sequence
          Length = 176078

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    cgcacgcacgcatgcagctg 146
              ||||||||||||||||||||
Sbjct: 134568 cgcacgcacgcatgcagctg 134587
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 207      ctctcggcggcgccggagatgacg 230
                |||||| |||||||||||||||||
Sbjct: 10937451 ctctcgccggcgccggagatgacg 10937428
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>emb|AL731618.3|OSJN00269 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012A12,
             complete sequence
          Length = 122766

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 207   ctctcggcggcgccggagatgacg 230
             |||||| |||||||||||||||||
Sbjct: 40516 ctctcgccggcgccggagatgacg 40493
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>gb|BC047349.1| Mus musculus, clone IMAGE:3595895, mRNA
          Length = 1680

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  ctcacaggctgggcaccctc 209
            ||||||||||||||||||||
Sbjct: 1232 ctcacaggctgggcaccctc 1213
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 218     gccggagatgacggtgagcaggttgttg 245
               ||||| |||||||||||||| |||||||
Sbjct: 6048197 gccggtgatgacggtgagcacgttgttg 6048224
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>dbj|AB060245.1| Macaca fascicularis brain cDNA clone:QflA-15249, full insert sequence
          Length = 2837

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  ctcacaggctgggcaccctc 209
            ||||||||||||||||||||
Sbjct: 2441 ctcacaggctgggcaccctc 2422
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>gb|U68715.1|BFU68715 Botryotinia fuckeliana endopolygalacturonase 1 (BcPGA1) gene,
           complete cds
          Length = 2291

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 148 gcatcaacagccgacggcgg 167
           ||||||||||||||||||||
Sbjct: 669 gcatcaacagccgacggcgg 688
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>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence
          Length = 949626

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 238    ggttgttgccgaaggggtcgctga 261
              ||||| ||||||||||||||||||
Sbjct: 254994 ggttggtgccgaaggggtcgctga 255017
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>emb|AL390254.6|CNS06C7M Human chromosome 14 DNA sequence BAC R-991C1 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 177792

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 132    gcacgcatgcagctgagcat 151
              ||||||||||||||||||||
Sbjct: 109052 gcacgcatgcagctgagcat 109033
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>gb|M12152.1|LGIAB19A Lemna gibba chlorophyll a/b apoprotein gene, complete cds
          Length = 1913

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                        
Query: 239  gttgttgccgaaggggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccggt 298
            ||||||| ||| |||||||  || |||| ||  ||||||||||| ||| |||| ||||||
Sbjct: 1495 gttgttggcgacggggtcggcgatgtggtcggccaggttctcgatggggcccttgccggt 1436

                
Query: 299  gacg 302
            ||||
Sbjct: 1435 gacg 1432


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,546,134
Number of Sequences: 3902068
Number of extensions: 2546134
Number of successful extensions: 45819
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45496
Number of HSP's gapped (non-prelim): 316
length of query: 317
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 295
effective length of database: 17,147,199,772
effective search space: 5058423932740
effective search space used: 5058423932740
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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