ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet29g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LEU2_NITWN (Q3SNV3) 3-isopropylmalate dehydratase large subunit ... 28 8.6
2LEU2_RHOPA (Q6ND69) 3-isopropylmalate dehydratase large subunit ... 28 8.6

>LEU2_NITWN (Q3SNV3) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 468

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 22  NTPSTDRSNPNPD 60
           N P+TDRS PNPD
Sbjct: 66  NVPTTDRSKPNPD 78



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>LEU2_RHOPA (Q6ND69) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 469

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 22  NTPSTDRSNPNPD 60
           N P+TDRS PNPD
Sbjct: 67  NVPTTDRSKPNPD 79


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,646,793
Number of Sequences: 219361
Number of extensions: 203046
Number of successful extensions: 482
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 80,573,946
effective HSP length: 42
effective length of database: 71,360,784
effective search space used: 1712658816
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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