| Clone Name | rbaet29g04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC117701.10| Mus musculus chromosome 16, clone RP23-463N5, complete sequence Length = 170497 Score = 46.1 bits (23), Expect = 0.073 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1 gaattatattgcatattttgttg 23 ||||||||||||||||||||||| Sbjct: 71555 gaattatattgcatattttgttg 71577
>gb|AC134392.5| Mus musculus chromosome 16, clone RP24-346N12, complete sequence Length = 170666 Score = 46.1 bits (23), Expect = 0.073 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1 gaattatattgcatattttgttg 23 ||||||||||||||||||||||| Sbjct: 4009 gaattatattgcatattttgttg 3987
>emb|CR388093.11| Zebrafish DNA sequence from clone CH211-279L9 in linkage group 2, complete sequence Length = 153673 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 7 tattgcatattttgttgaccaaaatt 32 ||||||| |||||||||||||||||| Sbjct: 96882 tattgcacattttgttgaccaaaatt 96907
>emb|BX470222.8| Zebrafish DNA sequence from clone DKEYP-120F10 in linkage group 23, complete sequence Length = 39795 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 7 tattgcatattttgttgaccaaaatt 32 ||||||||||||||||||| |||||| Sbjct: 7570 tattgcatattttgttgactaaaatt 7545
>gb|AE006181.1| Pasteurella multocida subsp. multocida str. Pm70 section 148 of 204 of the complete genome Length = 12169 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 ttgcatattttgttgaccaaa 29 ||||||||||||||||||||| Sbjct: 6792 ttgcatattttgttgaccaaa 6812
>emb|CR392364.6| Zebrafish DNA sequence from clone CH211-230I4 in linkage group 17, complete sequence Length = 91506 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 ttgcatattttgttgaccaaa 29 ||||||||||||||||||||| Sbjct: 15343 ttgcatattttgttgaccaaa 15323
>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence Length = 153766 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 68 ttgtatatgaaaatggagggagta 91 |||||||| ||||||||||||||| Sbjct: 66268 ttgtatataaaaatggagggagta 66291
>gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome condensation factor (CCF), putative resistance protein (RGA-2), putative resistance protein (RGA2) and putative nodulin-like-like protein (NLL) gene, complete cds; and retrotransposons Josephine, Angela-2, Angela-4, Heidi, Greti, Angela-3, Fatima, Erika-1, Angela-6, Angela-5, Barbara, Isabelle, Erika-2, and Claudia Length = 211009 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 68 ttgtatatgaaaatggagggagta 91 |||||||| ||||||||||||||| Sbjct: 203207 ttgtatataaaaatggagggagta 203184
>gb|AC162525.4| Mus musculus BAC clone RP23-188O11 from chromosome 17, complete sequence Length = 196013 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 aaaattacaagtcaaagctt 46 |||||||||||||||||||| Sbjct: 180944 aaaattacaagtcaaagctt 180925
>gb|AC116658.4| Mus musculus BAC clone RP23-293I4 from 17, complete sequence Length = 199182 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 aaaattacaagtcaaagctt 46 |||||||||||||||||||| Sbjct: 186639 aaaattacaagtcaaagctt 186658
>gb|AC143338.29| Medicago truncatula clone mth2-8d13, complete sequence Length = 113939 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 catattttgttgaccaaaat 31 |||||||||||||||||||| Sbjct: 56240 catattttgttgaccaaaat 56221
>emb|CR339051.6| Zebrafish DNA sequence from clone DKEY-223N8 in linkage group 7, complete sequence Length = 176851 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 tattgcatattttgttgaccaaaa 30 |||| ||||||||||||||||||| Sbjct: 133836 tatttcatattttgttgaccaaaa 133813
>emb|AL358372.11| Human DNA sequence from clone RP11-350E19 on chromosome 1 Contains a rodent farnesoid X receptor beta (Fxrb) pseudogene and the 5' end of the SYCP1 gene for synaptonemal complex protein 1, complete sequence Length = 155819 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 ttgacaaaggagtaacaaat 195 |||||||||||||||||||| Sbjct: 42836 ttgacaaaggagtaacaaat 42817
>emb|AL731632.2|OSJN00275 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0042I07, complete sequence Length = 129198 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gaaaatggagggagtagtac 95 |||||||||||||||||||| Sbjct: 49233 gaaaatggagggagtagtac 49252
>emb|AL669814.16| Mouse DNA sequence from clone RP23-431J18 on chromosome 11 Contains the 5' end of the Ranbp17 gene for RAN binding protein 17, the Gabrp gene for gamma-aminobutyric acid (GABA-A) receptor, pi, the 3' end of the Kcnip1 gene for Kv channel-interacting protein 1 and a CpG island, complete sequence Length = 198320 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tgcatattttgttgaccaaa 29 |||||||||||||||||||| Sbjct: 113865 tgcatattttgttgaccaaa 113884
>emb|CR456683.7| Zebrafish DNA sequence from clone CH211-39I13 in linkage group 13, complete sequence Length = 166196 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 tattgcatattttgttgaccaaaa 30 ||||||||||||||||||| |||| Sbjct: 48836 tattgcatattttgttgactaaaa 48813
>emb|BX571683.13| Zebrafish DNA sequence from clone CH211-279E7 in linkage group 20 Contains two CpG islands, complete sequence Length = 45633 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 attttgttgaccaaaattac 34 |||||||||||||||||||| Sbjct: 12823 attttgttgaccaaaattac 12804
>emb|BX649467.5| Zebrafish DNA sequence from clone CH211-117L16 in linkage group 4 Contains the gene for a novel protein similar to vertebrate mitochondrial ribosomal protein S18A (MRPS18A) and two novel genes, complete sequence Length = 74769 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 tattgcatattttgttgaccaaaa 30 ||||||| |||||||||||||||| Sbjct: 55764 tattgcacattttgttgaccaaaa 55787
>emb|AL928808.15| Zebrafish DNA sequence from clone DKEY-265H18 in linkage group 20 Contains a CpG island, complete sequence Length = 109407 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 attttgttgaccaaaattac 34 |||||||||||||||||||| Sbjct: 85356 attttgttgaccaaaattac 85375
>emb|BX537335.12| Zebrafish DNA sequence from clone DKEYP-84G9 in linkage group 23, complete sequence Length = 186566 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 aattatattgcatattttgt 21 |||||||||||||||||||| Sbjct: 130920 aattatattgcatattttgt 130901
>emb|BX571826.20| Zebrafish DNA sequence from clone DKEY-250K15 in linkage group 16, complete sequence Length = 167796 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 attttgttgaccaaaattac 34 |||||||||||||||||||| Sbjct: 16495 attttgttgaccaaaattac 16476
>gb|DQ103593.1| Olimarabidopsis pumila clone BAC 44L14, complete sequence Length = 118342 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 aattatattgcatattttgttgac 25 ||||||||||| |||||||||||| Sbjct: 5107 aattatattgcgtattttgttgac 5084
>gb|AC026742.3| Homo sapiens chromosome 5 clone CTD-3103E19, complete sequence Length = 149710 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 tatattgcatattttgttga 24 |||||||||||||||||||| Sbjct: 13270 tatattgcatattttgttga 13289
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gaaaatggagggagtagtac 95 |||||||||||||||||||| Sbjct: 17958954 gaaaatggagggagtagtac 17958973
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 ggagggagtagtaccaatat 101 |||||||||||||||||||| Sbjct: 18276542 ggagggagtagtaccaatat 18276523
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 atatgaaaatggagggagta 91 |||||||||||||||||||| Sbjct: 28285053 atatgaaaatggagggagta 28285072
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgaaaatggagggagtagta 94 |||||||||||||||||||| Sbjct: 22843773 tgaaaatggagggagtagta 22843754
>gb|AC093633.3| Homo sapiens BAC clone RP11-157M22 from 2, complete sequence Length = 173066 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 tatattgcatattttgttga 24 |||||||||||||||||||| Sbjct: 23187 tatattgcatattttgttga 23206
>dbj|AP003617.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0502H06 Length = 165630 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgaaaatggagggagtagta 94 |||||||||||||||||||| Sbjct: 18582 tgaaaatggagggagtagta 18563
>dbj|AP005759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0556A05 Length = 158189 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 ggagggagtagtaccaatat 101 |||||||||||||||||||| Sbjct: 125266 ggagggagtagtaccaatat 125247
>dbj|AP003622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0633E08 Length = 136471 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgaaaatggagggagtagta 94 |||||||||||||||||||| Sbjct: 130724 tgaaaatggagggagtagta 130705
>dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0625E02 Length = 153921 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 atatgaaaatggagggagta 91 |||||||||||||||||||| Sbjct: 140598 atatgaaaatggagggagta 140617
>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0470D12 Length = 157248 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 atatgaaaatggagggagta 91 |||||||||||||||||||| Sbjct: 10616 atatgaaaatggagggagta 10635
>emb|BX005358.16| Zebrafish DNA sequence from clone DKEY-161F12 in linkage group 20, complete sequence Length = 181198 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 tattgcatattttgttgaccaaaa 30 ||||||| |||||||||||||||| Sbjct: 42790 tattgcacattttgttgaccaaaa 42813
>emb|AL845365.9| Zebrafish DNA sequence from clone DKEY-150H13 in linkage group 20, complete sequence Length = 212942 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 tattgcatattttgttgaccaaaa 30 ||||||| |||||||||||||||| Sbjct: 46318 tattgcacattttgttgaccaaaa 46341
>emb|AL359238.4|CNS05TEP Human chromosome 14 DNA sequence BAC R-452D21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 166870 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tgcatattttgttgaccaaa 29 |||||||||||||||||||| Sbjct: 111987 tgcatattttgttgaccaaa 112006
>emb|AL974308.13| Zebrafish DNA sequence from clone DKEY-29P20, complete sequence Length = 180511 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 tattgcatattttgttgaccaaaa 30 ||||||||||||||||||| |||| Sbjct: 16196 tattgcatattttgttgactaaaa 16173
>emb|AL731587.2|OSJN00230 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0016N04, complete sequence Length = 164645 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gaaaatggagggagtagtac 95 |||||||||||||||||||| Sbjct: 155709 gaaaatggagggagtagtac 155728
>emb|AL928728.9| Zebrafish DNA sequence from clone CH211-212E24, complete sequence Length = 206513 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 aattatattgcatattttgt 21 |||||||||||||||||||| Sbjct: 33487 aattatattgcatattttgt 33506
>emb|AL138783.6| Human DNA sequence from clone RP5-1165D20 on chromosome 1p13.1-13.3, complete sequence Length = 118065 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 ttgacaaaggagtaacaaat 195 |||||||||||||||||||| Sbjct: 25159 ttgacaaaggagtaacaaat 25140
>emb|AL732571.8| Mouse DNA sequence from clone RP23-23D11 on chromosome 4, complete sequence Length = 214061 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 tatattgcatattttgttga 24 |||||||||||||||||||| Sbjct: 127614 tatattgcatattttgttga 127595 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,395,392 Number of Sequences: 3902068 Number of extensions: 3395392 Number of successful extensions: 66722 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66371 Number of HSP's gapped (non-prelim): 351 length of query: 341 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 319 effective length of database: 17,147,199,772 effective search space: 5469956727268 effective search space used: 5469956727268 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)