ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet29e06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X69087.1|HVCGSA H.vulgare mRNA for cytoplasmic glutamine syn... 168 6e-39
2gb|DQ124210.1| Triticum aestivum glutamine synthetase isoform GS... 115 8e-23
3gb|DQ124209.1| Triticum aestivum glutamine synthetase isoform GS... 84 3e-13
4gb|DQ124211.1| Triticum aestivum glutamine synthetase isoform GS... 76 7e-11
5gb|AC096777.1| Mus musculus clone RP23-106L19, complete sequence 46 0.058
6emb|BX255951.13| Zebrafish DNA sequence from clone DKEYP-31E5 in... 46 0.058
7ref|NM_118686.2| Arabidopsis thaliana MSH3 AT4G25540 (MSH3) mRNA... 44 0.23
8gb|AC121481.6| Rattus norvegicus NOVECTOR CH230-218J9 (Children... 44 0.23
9gb|AC131786.3| Mus musculus BAC clone RP24-397H7 from chromosome... 44 0.23
10emb|AJ007791.1|ATH7791 Arabidopsis thaliana mRNA for mismatch re... 44 0.23
11emb|AL161563.2|ATCHRIV63 Arabidopsis thaliana DNA chromosome 4, ... 44 0.23
12emb|AL022197.2|ATM7J2 Arabidopsis thaliana DNA chromosome 4, P1 ... 44 0.23
13dbj|AK222004.1| Arabidopsis thaliana mRNA for putative DNA misma... 44 0.23
14gb|AC118685.10| Mus musculus chromosome 5, clone RP23-412L2, com... 44 0.23
15gb|AC154050.1| Drosophila melanogaster clone BACR22M24, complete... 42 0.91
16emb|CT010519.5| Mouse DNA sequence from clone RP23-305D10 on chr... 42 0.91
17emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4,... 42 0.91
18emb|AL591126.18| Mouse DNA sequence from clone RP23-188A3 on chr... 42 0.91
19emb|AL807395.8| Mouse DNA sequence from clone RP23-81P12 on chro... 42 0.91
20gb|AC151529.20| Medicago truncatula clone mth2-7n23, complete se... 42 0.91
21gb|AC021639.5| Drosophila melanogaster, chromosome X, region 12E... 42 0.91
22dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.91
23gb|AC135977.5| Homo sapiens chromosome 11, clone RP11-61N20, com... 42 0.91
24gb|AC118942.4| Homo sapiens chromosome 11, clone RP11-15P23, com... 42 0.91
25dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 42 0.91
26gb|AC116411.7| Mus musculus chromosome 3, clone RP24-485O3, comp... 42 0.91
27gb|AE003494.4| Drosophila melanogaster chromosome X, section 46 ... 42 0.91
28gb|AC165078.2| Mus musculus BAC clone RP24-287O1 from chromosome... 40 3.6
29gb|AC119876.9| Mus musculus chromosome 3, clone RP24-309A12, com... 40 3.6
30gb|AC010124.6| Drosophila melanogaster clone BACR06O03, complete... 40 3.6
31ref|XM_718384.1| Candida albicans SC5314 hypothetical protein (C... 40 3.6
32ref|XM_718195.1| Candida albicans SC5314 hypothetical protein (C... 40 3.6
33gb|AC108949.4| Mus musculus BAC clone RP23-451K2 from 6, complet... 40 3.6
34gb|AC092728.2| Canis familiaris clone RP81-237O17, complete sequ... 40 3.6
35emb|AL512450.15| Human DNA sequence from clone RP11-52K20 on chr... 40 3.6
36gb|AC103419.6| Rattus norvegicus 9 BAC CH230-145A24 (Children's ... 40 3.6
37emb|CR381704.5| Zebrafish DNA sequence from clone CH211-202F6 in... 40 3.6
38emb|BX324195.8| Zebrafish DNA sequence from clone CH211-288O15 i... 40 3.6
39gb|AC161763.3| Mus musculus BAC clone RP23-294B14 from chromosom... 40 3.6
40gb|AC010032.10| Drosophila melanogaster 3L BAC RP98-2N23 (Roswel... 40 3.6
41gb|AC010688.6| Drosophila melanogaster 3L BAC RP98-11G5 (Roswell... 40 3.6
42gb|AC091127.3| Drosophila melanogaster 3L BAC RP98-27E18 (Roswel... 40 3.6
43gb|AC023508.16| Homo sapiens 3 BAC RP11-18O13 (Roswell Park Canc... 40 3.6
44gb|AC027670.6| Homo sapiens chromosome 10 clone RP11-176H12, com... 40 3.6
45gb|AC010751.5| Drosophila melanogaster 3L BAC RP98-9A23 (Roswell... 40 3.6
46gb|AC009560.10| Homo sapiens chromosome 15, clone RP11-219B17, c... 40 3.6
47gb|AC010594.7| Homo sapiens chromosome 5 clone CTC-478B9, comple... 40 3.6
48gb|AC093101.1| Drosophila melanogaster, chromosome 2L, region 35... 40 3.6
49gb|AC018763.6| Homo sapiens chromosome 5 clone CTD-2305C23, comp... 40 3.6
50gb|AC092247.1|AC092247 Drosophila melanogaster, chromosome 2L, r... 40 3.6
51gb|AC009209.6|AC009209 Drosophila melanogaster, chromosome 2R, r... 40 3.6
52gb|AC018616.5|AC018616 Homo sapiens chromosome 8, clone RP11-157... 40 3.6
53dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
54gb|AC034247.4|AC034247 Homo sapiens chromosome 5 clone RP11-343P... 40 3.6
55gb|AC008260.5|AC008260 Drosophila melanogaster, chromosome 2R, r... 40 3.6
56emb|BX004830.7| Zebrafish DNA sequence from clone CH211-159I8 in... 40 3.6
57gb|AC008316.3|AC008316 Drosophila melanogaster, chromosome 3R, r... 40 3.6
58gb|AC008824.6|AC008824 Homo sapiens chromosome 5 clone CTD-2132K... 40 3.6
59gb|AC026753.5|AC026753 Homo sapiens chromosome 5 clone RP11-72L1... 40 3.6
60dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
61dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
62gb|AC097004.3| Papio anubis clone RP41-290N16, complete sequence 40 3.6
63dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
64dbj|AP002483.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
65gb|AC006933.3|AC006933 Drosophila melanogaster, chromosome 3L, r... 40 3.6
66gb|AE003684.4| Drosophila melanogaster chromosome 3R, section 22... 40 3.6
67gb|AE003646.3| Drosophila melanogaster chromosome 2L, section 55... 40 3.6
68gb|AE003827.3| Drosophila melanogaster chromosome 2R, section 23... 40 3.6
69emb|AL157971.4|CNS01RGG Human chromosome 14 DNA sequence BAC R-9... 40 3.6
70gb|AE003526.4| Drosophila melanogaster chromosome 3L, section 59... 40 3.6
71gb|AE003470.4| Drosophila melanogaster chromosome 3L, section 4 ... 40 3.6
72gb|AC005860.1|AC005860 Drosophila melanogaster DNA sequence (P1s... 40 3.6
73gb|AC149593.5| Mus musculus BAC clone RP23-34O23 from 7, complet... 40 3.6
74emb|AL953853.8| Mouse DNA sequence from clone RP23-6M16 on chrom... 40 3.6
75emb|AL845292.4| Mouse DNA sequence from clone RP23-386I21 on chr... 40 3.6
76gb|AC124539.4| Mus musculus BAC clone RP23-359M14 from chromosom... 40 3.6 
>emb|X69087.1|HVCGSA H.vulgare mRNA for cytoplasmic glutamine synthetase
          Length = 1456

 Score =  168 bits (85), Expect = 6e-39
 Identities = 92/95 (96%)
 Strand = Plus / Minus

                                                                        
Query: 183  gagatgaccatgatgatgtgacctacctaagcggactaggagtagtatgcaaccaaacgt 242
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct: 1288 gagatgaccatgatgatgtgacctacctaagcggactaggagtagtatncanccacacgt 1229

                                               
Query: 243  aaaaggaaaatgctggaagaattttcgcccaaggc 277
            |||||||||||||||||||||||||||||||||||
Sbjct: 1228 aaaaggaaaatgctggaagaattttcgcccaaggc 1194



 Score =  113 bits (57), Expect = 3e-22
 Identities = 62/64 (96%)
 Strand = Plus / Minus

                                                                        
Query: 123  tgctttgacacgccccttgccacccatcacccaccacccacccaaagacgagaacgagaa 182
            |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 1368 tgctttgacacgccccttgccacccatcacccaccacccacccanagacgagagcgagaa 1309

                
Query: 183  gaga 186
            ||||
Sbjct: 1308 gaga 1305



 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                        
Query: 56   gattacacgagaccataacatccagacgggaagggaaaacaatcaaccaaatactggagt 115
            ||||||||||||||||| ||||||||||| |||||  |||||||| ||| |||||| |||
Sbjct: 1454 gattacacgagaccatagcatccagacggcaagggttaacaatcacccanatactgtagt 1395

                    
Query: 116  aattttgt 123
            ||| ||||
Sbjct: 1394 aatcttgt 1387
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>gb|DQ124210.1| Triticum aestivum glutamine synthetase isoform GS1b (GS1) mRNA,
            complete cds
          Length = 1496

 Score =  115 bits (58), Expect = 8e-23
 Identities = 91/102 (89%), Gaps = 5/102 (4%)
 Strand = Plus / Minus

                                                                        
Query: 5    gcgtggtaccacggctgcggtacggaccattttattaccatttcaatcgatgattacacg 64
            ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 1484 gcgtggtaccacggctgcggtacggaccattttattaccatatcaattgatgattacacg 1425

                                                      
Query: 65   agac-----cataacatccagacgggaagggaaaacaatcaa 101
            ||||     || | || |||||||| ||||||||||||||||
Sbjct: 1424 agacgagaccagagcacccagacggcaagggaaaacaatcaa 1383



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                      
Query: 194  gatgatgtgacctacctaagcggactaggagtagtatgcaaccaaacgtaaaaggaaa 251
            ||||||||||||||||||| ||||||| | |||||||||||||||||| |||||||||
Sbjct: 1296 gatgatgtgacctacctaaacggactacgcgtagtatgcaaccaaacggaaaaggaaa 1239



 Score = 44.1 bits (22), Expect = 0.23
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 126  tttgacacgccccttgccacccatcaccca 155
            ||||||||||| ||||||||||| ||||||
Sbjct: 1367 tttgacacgcctcttgccacccaccaccca 1338
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>gb|DQ124209.1| Triticum aestivum glutamine synthetase isoform GS1a (GS1) mRNA,
            complete cds
          Length = 1292

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 67/74 (90%), Gaps = 1/74 (1%)
 Strand = Plus / Minus

                                                                        
Query: 194  gatgatgtgacctacctaagcggactaggagtagtatgcaaccaaacgtaaaaggaaa-a 252
            ||||||| ||||||||||||||||||| | |||||||||||||||||| ||||| ||| |
Sbjct: 1290 gatgatgcgacctacctaagcggactacgcgtagtatgcaaccaaacggaaaagcaaata 1231

                          
Query: 253  tgctggaagaattt 266
            || |||||||||||
Sbjct: 1230 tgttggaagaattt 1217
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>gb|DQ124211.1| Triticum aestivum glutamine synthetase isoform GS1c (GS1) mRNA,
            complete cds
          Length = 1223

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                      
Query: 194  gatgatgtgacctacctaagcggactaggagtagtatgcaaccaaacgtaaaaggaaa 251
            ||||||||||||||||||| ||||||| | |||||||||||||||||| ||| |||||
Sbjct: 1221 gatgatgtgacctacctaaacggactacgcgtagtatgcaaccaaacggaaacggaaa 1164
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>gb|AC096777.1| Mus musculus clone RP23-106L19, complete sequence
          Length = 209671

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 142   ccacccatcacccaccacccacc 164
             |||||||||||||||||||||||
Sbjct: 96144 ccacccatcacccaccacccacc 96122
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>emb|BX255951.13| Zebrafish DNA sequence from clone DKEYP-31E5 in linkage group 5, complete
              sequence
          Length = 171425

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 178    gagaagagatgaccatgatgatg 200
              |||||||||||||||||||||||
Sbjct: 151412 gagaagagatgaccatgatgatg 151434
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>ref|NM_118686.2| Arabidopsis thaliana MSH3 AT4G25540 (MSH3) mRNA, complete cds
          Length = 3487

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 186  atgaccatgatgatgtgacctaccta 211
            |||| |||||||||||||||||||||
Sbjct: 2986 atgatcatgatgatgtgacctaccta 3011
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>gb|AC121481.6| Rattus norvegicus  NOVECTOR CH230-218J9 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 236244

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 143   cacccatcacccaccacccacc 164
             ||||||||||||||||||||||
Sbjct: 35906 cacccatcacccaccacccacc 35927
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>gb|AC131786.3| Mus musculus BAC clone RP24-397H7 from chromosome 5, complete sequence
          Length = 176338

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 142    ccacccatcacccaccacccacccaa 167
              ||||||| ||||||||||||||||||
Sbjct: 162207 ccacccaccacccaccacccacccaa 162232
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>emb|AJ007791.1|ATH7791 Arabidopsis thaliana mRNA for mismatch repair protein (Msh3)
          Length = 3521

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 186  atgaccatgatgatgtgacctaccta 211
            |||| |||||||||||||||||||||
Sbjct: 2986 atgatcatgatgatgtgacctaccta 3011
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>emb|AL161563.2|ATCHRIV63 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 63
          Length = 198777

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 186    atgaccatgatgatgtgacctaccta 211
              |||| |||||||||||||||||||||
Sbjct: 125460 atgatcatgatgatgtgacctaccta 125435
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>emb|AL022197.2|ATM7J2 Arabidopsis thaliana DNA chromosome 4, P1 clone M7J2 (ESSA project)
          Length = 80386

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 186   atgaccatgatgatgtgacctaccta 211
             |||| |||||||||||||||||||||
Sbjct: 29358 atgatcatgatgatgtgacctaccta 29383
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>dbj|AK222004.1| Arabidopsis thaliana mRNA for putative DNA mismatch repair protein,
           partial cds, clone: RAFL22-65-J17
          Length = 1307

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 186 atgaccatgatgatgtgacctaccta 211
           |||| |||||||||||||||||||||
Sbjct: 803 atgatcatgatgatgtgacctaccta 828
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>gb|AC118685.10| Mus musculus chromosome 5, clone RP23-412L2, complete sequence
          Length = 200341

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 142   ccacccatcacccaccacccacccaa 167
             ||||||| ||||||||||||||||||
Sbjct: 26695 ccacccaccacccaccacccacccaa 26720
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>gb|AC154050.1| Drosophila melanogaster clone BACR22M24, complete sequence
          Length = 161653

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 144   acccatcacccaccacccacc 164
             |||||||||||||||||||||
Sbjct: 82833 acccatcacccaccacccacc 82853
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>emb|CT010519.5| Mouse DNA sequence from clone RP23-305D10 on chromosome 14, complete
              sequence
          Length = 224463

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 142    ccacccatcacccaccacccaccca 166
              ||||||| |||||||||||||||||
Sbjct: 128545 ccacccaccacccaccacccaccca 128569
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>emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072F16,
             complete sequence
          Length = 176383

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 228   tatgcaaccaaacgtaaaaggaaaatgctggaa 260
             ||||||||||||||||| || |||||| |||||
Sbjct: 55014 tatgcaaccaaacgtaacagtaaaatgatggaa 54982
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>emb|AL591126.18| Mouse DNA sequence from clone RP23-188A3 on chromosome 11 Contains a
              glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene,
              the 5' end of the Nf1 gene for neurofibromatosis 1 and a
              ribosomal protein L17 (Rpl17) pseudogene, complete sequence
          Length = 190048

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 142    ccacccatcacccaccacccaccca 166
              ||||||||||||||||| |||||||
Sbjct: 169205 ccacccatcacccaccatccaccca 169181



 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 142    ccacccatcacccaccacccaccca 166
              ||||||||||||||||| |||||||
Sbjct: 169146 ccacccatcacccaccatccaccca 169122



 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 142    ccacccatcacccaccacccaccca 166
              ||||||||||||||||| |||||||
Sbjct: 169080 ccacccatcacccaccatccaccca 169056
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>emb|AL807395.8| Mouse DNA sequence from clone RP23-81P12 on chromosome 11 Contains the 5'
              end of the Tcn2 gene for transcobalamin 2, two novel genes,
              a glyceraldehyde-3-phosphate dehydrogenase (Gapd)
              pseudogene, the Pes1 gene for BRCT domain containing
              pescadillo homolog 1 (zebrafish), the Gcst gene for
              galactosylceramide sulfotransferase, a
              ubiquitin-conjugating enzyme E2L 3 (Ube2l3) pseuogene, the
              Sec14l4 and Sec14l2 genes for SEC14-like 4 (S. cerevisiae)
              and 2, the ortholog of human and rat SEC14-like 3 (S.
              cerevisiae) SEC14L3, a ribosomal protein L29 (Rpl29)
              pseudogene, a transformer 2 alpha homolog (Drosophila)
              (Tra2a) pseudogene and a CpG island, complete sequence
          Length = 201238

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 142    ccacccatcacccaccacccaccca 166
              ||||||||||||||||| |||||||
Sbjct: 139785 ccacccatcacccaccatccaccca 139761
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>gb|AC151529.20| Medicago truncatula clone mth2-7n23, complete sequence
          Length = 134908

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 178   gagaagagatgaccatgatga 198
             |||||||||||||||||||||
Sbjct: 30097 gagaagagatgaccatgatga 30117
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>gb|AC021639.5| Drosophila melanogaster, chromosome X, region 12E-12E, BAC clone
              BACR02C24, complete sequence
          Length = 234783

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 144    acccatcacccaccacccacc 164
              |||||||||||||||||||||
Sbjct: 152206 acccatcacccaccacccacc 152186
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 228      tatgcaaccaaacgtaaaaggaaaatgctggaa 260
                ||||||||||||||||| || |||||| |||||
Sbjct: 22960558 tatgcaaccaaacgtaacagtaaaatgatggaa 22960526
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>gb|AC135977.5| Homo sapiens chromosome 11, clone RP11-61N20, complete sequence
          Length = 152868

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 33    attttattaccatttcaatcg 53
             |||||||||||||||||||||
Sbjct: 88525 attttattaccatttcaatcg 88545
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>gb|AC118942.4| Homo sapiens chromosome 11, clone RP11-15P23, complete sequence
          Length = 161527

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 33  attttattaccatttcaatcg 53
           |||||||||||||||||||||
Sbjct: 117 attttattaccatttcaatcg 137
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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 86      aagggaaaacaatcaaccaaa 106
               |||||||||||||||||||||
Sbjct: 3994553 aagggaaaacaatcaaccaaa 3994573
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>gb|AC116411.7| Mus musculus chromosome 3, clone RP24-485O3, complete sequence
          Length = 143601

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 145   cccatcacccaccacccaccc 165
             |||||||||||||||||||||
Sbjct: 82487 cccatcacccaccacccaccc 82507
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>gb|AE003494.4| Drosophila melanogaster chromosome X, section 46 of 74 of the complete
              sequence
          Length = 310498

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 144    acccatcacccaccacccacc 164
              |||||||||||||||||||||
Sbjct: 181498 acccatcacccaccacccacc 181518
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>gb|AC165078.2| Mus musculus BAC clone RP24-287O1 from chromosome 12, complete sequence
          Length = 172492

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 142    ccacccatcacccaccacccaccc 165
              ||||||| ||||||||||||||||
Sbjct: 105273 ccacccaccacccaccacccaccc 105296
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>gb|AC119876.9| Mus musculus chromosome 3, clone RP24-309A12, complete sequence
          Length = 165926

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    ccatcacccaccacccaccc 165
              ||||||||||||||||||||
Sbjct: 105970 ccatcacccaccacccaccc 105989
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>gb|AC010124.6| Drosophila melanogaster clone BACR06O03, complete sequence
          Length = 193483

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 141    gccacccatcacccaccacccacc 164
              |||||||| |||||||||||||||
Sbjct: 171765 gccacccaccacccaccacccacc 171788
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>ref|XM_718384.1| Candida albicans SC5314 hypothetical protein (CaO19_4791), mRNA
          Length = 2931

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 90   gaaaacaatcaaccaaatac 109
            ||||||||||||||||||||
Sbjct: 1212 gaaaacaatcaaccaaatac 1193
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>ref|XM_718195.1| Candida albicans SC5314 hypothetical protein (CaO19_12255), mRNA
          Length = 2931

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 90   gaaaacaatcaaccaaatac 109
            ||||||||||||||||||||
Sbjct: 1212 gaaaacaatcaaccaaatac 1193
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>gb|AC108949.4| Mus musculus BAC clone RP23-451K2 from 6, complete sequence
          Length = 181571

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 145    cccatcacccaccacccacc 164
              ||||||||||||||||||||
Sbjct: 151460 cccatcacccaccacccacc 151479
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>gb|AC092728.2| Canis familiaris clone RP81-237O17, complete sequence
          Length = 141578

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 142    ccacccatcacccaccacccaccc 165
              ||||||| ||||||||||||||||
Sbjct: 122983 ccacccaccacccaccacccaccc 123006
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>emb|AL512450.15| Human DNA sequence from clone RP11-52K20 on chromosome 10, complete
            sequence
          Length = 35681

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 33   attttattaccatttcaatc 52
            ||||||||||||||||||||
Sbjct: 1962 attttattaccatttcaatc 1943
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>gb|AC103419.6| Rattus norvegicus 9 BAC CH230-145A24 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 217001

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 142   ccacccatcacccaccacccaccc 165
             ||||||| ||||||||||||||||
Sbjct: 85757 ccacccaccacccaccacccaccc 85734
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>emb|CR381704.5| Zebrafish DNA sequence from clone CH211-202F6 in linkage group 14,
              complete sequence
          Length = 130789

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 191    catgatgatgtgacctacct 210
              ||||||||||||||||||||
Sbjct: 105516 catgatgatgtgacctacct 105497
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>emb|BX324195.8| Zebrafish DNA sequence from clone CH211-288O15 in linkage group 14,
             complete sequence
          Length = 156128

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   catgatgatgtgacctacct 210
             ||||||||||||||||||||
Sbjct: 73533 catgatgatgtgacctacct 73552
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>gb|AC161763.3| Mus musculus BAC clone RP23-294B14 from chromosome 7, complete sequence
          Length = 221679

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 142    ccacccatcacccaccacccaccc 165
              ||||||| ||||||||||||||||
Sbjct: 180420 ccacccaccacccaccacccaccc 180397
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>gb|AC010032.10| Drosophila melanogaster 3L BAC RP98-2N23 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 192399

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 141    gccacccatcacccaccacccacc 164
              |||||||| |||||||||||||||
Sbjct: 100732 gccacccaacacccaccacccacc 100709
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>gb|AC010688.6| Drosophila melanogaster 3L BAC RP98-11G5 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 201313

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 141    gccacccatcacccaccacccacc 164
              |||||||| |||||||||||||||
Sbjct: 159539 gccacccaccacccaccacccacc 159562
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>gb|AC091127.3| Drosophila melanogaster 3L BAC RP98-27E18 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 177835

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 141   gccacccatcacccaccacccacc 164
             |||||||| |||||||||||||||
Sbjct: 18241 gccacccaacacccaccacccacc 18218
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>gb|AC023508.16| Homo sapiens 3 BAC RP11-18O13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 136105

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    attttattaccatttcaatc 52
             ||||||||||||||||||||
Sbjct: 27152 attttattaccatttcaatc 27133
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>gb|AC027670.6| Homo sapiens chromosome 10 clone RP11-176H12, complete sequence
          Length = 191805

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     attttattaccatttcaatc 52
              ||||||||||||||||||||
Sbjct: 191767 attttattaccatttcaatc 191748
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>gb|AC010751.5| Drosophila melanogaster 3L BAC RP98-9A23 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 181437

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 141    gccacccatcacccaccacccacc 164
              |||||||| |||||||||||||||
Sbjct: 170190 gccacccaccacccaccacccacc 170167
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>gb|AC009560.10| Homo sapiens chromosome 15, clone RP11-219B17, complete sequence
          Length = 177308

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 231    gcaaccaaacgtaaaaggaaaatg 254
              ||||||||||||||||||| ||||
Sbjct: 141191 gcaaccaaacgtaaaaggacaatg 141168
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>gb|AC010594.7| Homo sapiens chromosome 5 clone CTC-478B9, complete sequence
          Length = 78389

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    ggaaaacaatcaaccaaata 108
             ||||||||||||||||||||
Sbjct: 41909 ggaaaacaatcaaccaaata 41890
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>gb|AC093101.1| Drosophila melanogaster, chromosome 2L, region 35X-35X, BAC clone
              BACR06I01, complete sequence
          Length = 175167

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 141    gccacccatcacccaccacccacc 164
              |||||||| |||||||||||||||
Sbjct: 153346 gccacccaccacccaccacccacc 153323
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>gb|AC018763.6| Homo sapiens chromosome 5 clone CTD-2305C23, complete sequence
          Length = 119974

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 237    aaacgtaaaaggaaaatgct 256
              ||||||||||||||||||||
Sbjct: 112536 aaacgtaaaaggaaaatgct 112555
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>gb|AC092247.1|AC092247 Drosophila melanogaster, chromosome 2L, region 35X-35X, BAC clone
           BACR36B06, complete sequence
          Length = 183436

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 141 gccacccatcacccaccacccacc 164
           |||||||| |||||||||||||||
Sbjct: 412 gccacccaccacccaccacccacc 389
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>gb|AC009209.6|AC009209 Drosophila melanogaster, chromosome 2R, region 47D-47D, BAC clone
             BACR24G16, complete sequence
          Length = 165974

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 141   gccacccatcacccaccacccacc 164
             |||||||| |||||||||||||||
Sbjct: 14666 gccacccaccacccaccacccacc 14689
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>gb|AC018616.5|AC018616 Homo sapiens chromosome 8, clone RP11-157I4, complete sequence
          Length = 165948

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    attttattaccatttcaatc 52
             ||||||||||||||||||||
Sbjct: 71266 attttattaccatttcaatc 71247
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 145      cccatcacccaccacccacc 164
                ||||||||||||||||||||
Sbjct: 38034700 cccatcacccaccacccacc 38034719



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 244     aaaggaaaatgctggaagaatttt 267
               |||||||||||||||| |||||||
Sbjct: 2219791 aaaggaaaatgctggatgaatttt 2219814
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>gb|AC034247.4|AC034247 Homo sapiens chromosome 5 clone RP11-343P16, complete sequence
          Length = 171482

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 237    aaacgtaaaaggaaaatgct 256
              ||||||||||||||||||||
Sbjct: 171450 aaacgtaaaaggaaaatgct 171431
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>gb|AC008260.5|AC008260 Drosophila melanogaster, chromosome 2R, region 47B-47C, BAC clone
              BACR13J10, complete sequence
          Length = 140940

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 141    gccacccatcacccaccacccacc 164
              |||||||| |||||||||||||||
Sbjct: 131284 gccacccaccacccaccacccacc 131307
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>emb|BX004830.7| Zebrafish DNA sequence from clone CH211-159I8 in linkage group 14,
              complete sequence
          Length = 201070

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 191    catgatgatgtgacctacct 210
              ||||||||||||||||||||
Sbjct: 137181 catgatgatgtgacctacct 137200
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>gb|AC008316.3|AC008316 Drosophila melanogaster, chromosome 3R, region 85F-85F, BAC clone
              BACR23O04, complete sequence
          Length = 160817

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 141    gccacccatcacccaccacccacc 164
              |||||||| |||||||||||||||
Sbjct: 137788 gccacccaccacccaccacccacc 137765
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>gb|AC008824.6|AC008824 Homo sapiens chromosome 5 clone CTD-2132K6, complete sequence
          Length = 121178

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    ggaaaacaatcaaccaaata 108
             ||||||||||||||||||||
Sbjct: 44746 ggaaaacaatcaaccaaata 44765
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>gb|AC026753.5|AC026753 Homo sapiens chromosome 5 clone RP11-72L14, complete sequence
          Length = 148491

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 237    aaacgtaaaaggaaaatgct 256
              ||||||||||||||||||||
Sbjct: 141619 aaacgtaaaaggaaaatgct 141600
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>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0698A10
          Length = 137348

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 145    cccatcacccaccacccacc 164
              ||||||||||||||||||||
Sbjct: 115644 cccatcacccaccacccacc 115663
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>dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0471B04
          Length = 138025

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 145  cccatcacccaccacccacc 164
            ||||||||||||||||||||
Sbjct: 2734 cccatcacccaccacccacc 2753
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>gb|AC097004.3| Papio anubis clone RP41-290N16, complete sequence
          Length = 166987

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 143   cacccatcacccaccacccaccca 166
             |||||| |||||||||||||||||
Sbjct: 85198 cacccaccacccaccacccaccca 85175
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>dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0480E02
          Length = 141862

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 244    aaaggaaaatgctggaagaatttt 267
              |||||||||||||||| |||||||
Sbjct: 140903 aaaggaaaatgctggatgaatttt 140926
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>dbj|AP002483.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
            clone:P0019D06
          Length = 167405

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 244  aaaggaaaatgctggaagaatttt 267
            |||||||||||||||| |||||||
Sbjct: 3375 aaaggaaaatgctggatgaatttt 3398
to top
>gb|AC006933.3|AC006933 Drosophila melanogaster, chromosome 3L, region 73B7-73D6, BAC clone
              BACR48E21, complete sequence
          Length = 186002

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 141    gccacccatcacccaccacccacc 164
              |||||||| |||||||||||||||
Sbjct: 152682 gccacccaccacccaccacccacc 152659
to top
>gb|AE003684.4| Drosophila melanogaster chromosome 3R, section 22 of 118 of the complete
              sequence
          Length = 214323

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 141    gccacccatcacccaccacccacc 164
              |||||||| |||||||||||||||
Sbjct: 157511 gccacccaccacccaccacccacc 157488
to top
>gb|AE003646.3| Drosophila melanogaster chromosome 2L, section 55 of 83 of the complete
              sequence
          Length = 265413

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 141    gccacccatcacccaccacccacc 164
              |||||||| |||||||||||||||
Sbjct: 198399 gccacccaccacccaccacccacc 198376
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>gb|AE003827.3| Drosophila melanogaster chromosome 2R, section 23 of 73 of the complete
             sequence
          Length = 256227

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 141   gccacccatcacccaccacccacc 164
             |||||||| |||||||||||||||
Sbjct: 34387 gccacccaccacccaccacccacc 34410
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>emb|AL157971.4|CNS01RGG Human chromosome 14 DNA sequence BAC R-933I1 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176368

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     attttattaccatttcaatc 52
              ||||||||||||||||||||
Sbjct: 108245 attttattaccatttcaatc 108264
to top
>gb|AE003526.4| Drosophila melanogaster chromosome 3L, section 59 of 83 of the complete
              sequence
          Length = 281100

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 141    gccacccatcacccaccacccacc 164
              |||||||| |||||||||||||||
Sbjct: 163412 gccacccaccacccaccacccacc 163435
to top
>gb|AE003470.4| Drosophila melanogaster chromosome 3L, section 4 of 83 of the complete
             sequence
          Length = 318699

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 141   gccacccatcacccaccacccacc 164
             |||||||| |||||||||||||||
Sbjct: 32888 gccacccaacacccaccacccacc 32865
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>gb|AC005860.1|AC005860 Drosophila melanogaster DNA sequence (P1s DS04504 (D346) and DS00068
             (D348)), complete sequence
          Length = 83099

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 141   gccacccatcacccaccacccacc 164
             |||||||| |||||||||||||||
Sbjct: 35494 gccacccaccacccaccacccacc 35517
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>gb|AC149593.5| Mus musculus BAC clone RP23-34O23 from 7, complete sequence
          Length = 231000

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 142    ccacccatcacccaccacccaccc 165
              ||||||| ||||||||||||||||
Sbjct: 202692 ccacccaccacccaccacccaccc 202715
to top
>emb|AL953853.8| Mouse DNA sequence from clone RP23-6M16 on chromosome 2, complete
              sequence
          Length = 195971

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 142    ccacccatcacccaccacccaccc 165
              ||||||| ||||||||||||||||
Sbjct: 174878 ccacccaccacccaccacccaccc 174855
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>emb|AL845292.4| Mouse DNA sequence from clone RP23-386I21 on chromosome 2, complete
              sequence
          Length = 186607

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    cccatcacccaccacccacc 164
              ||||||||||||||||||||
Sbjct: 153652 cccatcacccaccacccacc 153633
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>gb|AC124539.4| Mus musculus BAC clone RP23-359M14 from chromosome 12, complete
             sequence
          Length = 183684

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 142   ccacccatcacccaccacccaccc 165
             ||||||| ||||||||||||||||
Sbjct: 77077 ccacccaccacccaccacccaccc 77054


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,486,945
Number of Sequences: 3902068
Number of extensions: 2486945
Number of successful extensions: 82882
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82640
Number of HSP's gapped (non-prelim): 221
length of query: 277
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 255
effective length of database: 17,147,199,772
effective search space: 4372535941860
effective search space used: 4372535941860
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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