ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaet29d10 |
|---|---|
| Clone Library Name | barley_pub |
>PSAN_HORVU (P31093) Photosystem I reaction center subunit N, chloroplast| precursor (PSI-N) Length = 145 Score = 169 bits (428), Expect = 2e-42 Identities = 78/78 (100%), Positives = 78/78 (100%) Frame = -3 Query: 371 EKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFITDDLEI 192 EKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFITDDLEI Sbjct: 68 EKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFITDDLEI 127 Query: 191 ECEGKEKFKCGSNVFWKW 138 ECEGKEKFKCGSNVFWKW Sbjct: 128 ECEGKEKFKCGSNVFWKW 145
>PSAN_MAIZE (O65107) Photosystem I reaction center subunit N, chloroplast| precursor (PSI-N) (Fragment) Length = 112 Score = 161 bits (407), Expect = 4e-40 Identities = 73/78 (93%), Positives = 76/78 (97%) Frame = -3 Query: 371 EKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFITDDLEI 192 EKSK NKELNDKKR ATSGANFARAYTV+FGSC+FPYNFTGCQDLAKQKKVPFI+DDLEI Sbjct: 35 EKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFISDDLEI 94 Query: 191 ECEGKEKFKCGSNVFWKW 138 ECEGKEKFKCGSNVFWKW Sbjct: 95 ECEGKEKFKCGSNVFWKW 112
>PSAN_ARATH (P49107) Photosystem I reaction center subunit N, chloroplast| precursor (PSI-N) Length = 171 Score = 150 bits (378), Expect = 9e-37 Identities = 66/78 (84%), Positives = 74/78 (94%) Frame = -3 Query: 371 EKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFITDDLEI 192 E+SK NKELNDKKR ATSGANFARA+TVQFGSCKFP NFTGCQDLAKQKKVPFI++D+ + Sbjct: 94 ERSKTNKELNDKKRLATSGANFARAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIAL 153 Query: 191 ECEGKEKFKCGSNVFWKW 138 ECEGK+K+KCGSNVFWKW Sbjct: 154 ECEGKDKYKCGSNVFWKW 171
>PSAN_VOLCA (Q9SBN5) Photosystem I reaction center subunit N, chloroplast| precursor (PSI-N) Length = 139 Score = 87.0 bits (214), Expect = 1e-17 Identities = 42/71 (59%), Positives = 52/71 (73%) Frame = -3 Query: 368 KSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFITDDLEIE 189 KS NK LN+KKR ATS AN AR+ TV G+C+FP NF GC++LA K V +I +DL+IE Sbjct: 62 KSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYIAEDLKIE 121 Query: 188 CEGKEKFKCGS 156 CEGK+ CGS Sbjct: 122 CEGKDAKSCGS 132
>POLG_PVYN (P18247) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral gen Length = 3063 Score = 32.0 bits (71), Expect = 0.38 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%) Frame = -3 Query: 293 TVQFGS--CKFPYNFTGCQDLAKQKKVPFITD---DLEIECEGK 177 T+ FGS CK PY+ C+ + K+++VP D DLE + + Sbjct: 7 TICFGSFECKLPYSPASCEHIVKEREVPASVDPFADLETQLSAR 50
>POLG_PVYO (P22602) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3] (Fragment) Length = 856 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%) Frame = -3 Query: 293 TVQFGS--CKFPYNFTGCQDLAKQKKVPFITD---DLEIECEGK 177 T+ FGS CK PY+ C + K+++VP D DLE + + Sbjct: 7 TICFGSFECKLPYSPASCGHIVKEREVPASVDPFADLETQLSAR 50
>OTOF_HUMAN (Q9HC10) Otoferlin (Fer-1-like protein 2)| Length = 1997 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/62 (29%), Positives = 28/62 (45%) Frame = -3 Query: 269 FPYNFTGCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW*SWSIWRVPMYVSQAV 90 + ++ G DL + K+ DLE K + CG + ++IWR PM SQ + Sbjct: 1562 YDWDLVGTDDLIGETKI-----DLENRFYSKHRATCGIAQTYSTHGYNIWRDPMKPSQIL 1616 Query: 89 PR 84 R Sbjct: 1617 TR 1618
>OTOF_RAT (Q9ERC5) Otoferlin (Fer-1-like protein 2) (Fragment)| Length = 266 Score = 29.6 bits (65), Expect = 1.9 Identities = 18/62 (29%), Positives = 28/62 (45%) Frame = -3 Query: 269 FPYNFTGCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW*SWSIWRVPMYVSQAV 90 + ++ G DL + K+ DLE K + CG + ++IWR PM SQ + Sbjct: 5 YDWDLVGTDDLIGETKI-----DLENRFYSKHRATCGIAQTYSIHGYNIWRDPMKPSQIL 59 Query: 89 PR 84 R Sbjct: 60 TR 61
>OTOF_MOUSE (Q9ESF1) Otoferlin (Fer-1-like protein 2)| Length = 1997 Score = 29.6 bits (65), Expect = 1.9 Identities = 18/62 (29%), Positives = 28/62 (45%) Frame = -3 Query: 269 FPYNFTGCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW*SWSIWRVPMYVSQAV 90 + ++ G DL + K+ DLE K + CG + ++IWR PM SQ + Sbjct: 1562 YDWDLVGTDDLIGETKI-----DLENRFYSKHRATCGIAQTYSIHGYNIWRDPMKPSQIL 1616 Query: 89 PR 84 R Sbjct: 1617 TR 1618
>THIE_HAEIN (P71350) Thiamine-phosphate pyrophosphorylase (EC 2.5.1.3) (TMP| pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate synthase) Length = 226 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 5/28 (17%) Frame = -3 Query: 248 CQDLAKQKKVPFITDD-----LEIECEG 180 C+DL ++ VPFI DD LEIE +G Sbjct: 69 CRDLCREYGVPFIVDDNVDLALEIEADG 96
>LIFR_RAT (O70535) Leukemia inhibitory factor receptor precursor (LIF| receptor) (LIF-R) (CD118 antigen) Length = 1093 Score = 27.7 bits (60), Expect = 7.1 Identities = 8/16 (50%), Positives = 10/16 (62%) Frame = -3 Query: 173 KFKCGSNVFWKW*SWS 126 + +C S FWKW WS Sbjct: 504 RVRCSSETFWKWSKWS 519
>XPP_YEAST (Q07825) Putative Xaa-Pro aminopeptidase (EC 3.4.11.9)| Length = 749 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = -3 Query: 371 EKSKLNKELNDKKRAATSGAN 309 +K KL K+LNDK +AT+G N Sbjct: 304 KKEKLLKKLNDKASSATTGRN 324
>LIFR_MOUSE (P42703) Leukemia inhibitory factor receptor precursor (LIF| receptor) (LIF-R) (D-factor/LIF receptor) (CD118 antigen) Length = 1092 Score = 27.3 bits (59), Expect = 9.3 Identities = 8/16 (50%), Positives = 10/16 (62%) Frame = -3 Query: 173 KFKCGSNVFWKW*SWS 126 + +C S FWKW WS Sbjct: 503 RVRCSSKTFWKWSRWS 518 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,799,720 Number of Sequences: 219361 Number of extensions: 568142 Number of successful extensions: 1489 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1464 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1488 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
