ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet29d08 |
|---|---|
| Clone Library Name | barley_pub |
>RS26_ORYSA (P49216) 40S ribosomal protein S26 (S31)| Length = 133 Score = 42.4 bits (98), Expect = 4e-04 Identities = 17/17 (100%), Positives = 17/17 (100%) Frame = -1 Query: 422 LYAKVHHCVSCAIHAHI 372 LYAKVHHCVSCAIHAHI Sbjct: 67 LYAKVHHCVSCAIHAHI 83
>RS26_ARATH (P49206) 40S ribosomal protein S26| Length = 131 Score = 33.9 bits (76), Expect = 0.16 Identities = 12/17 (70%), Positives = 15/17 (88%) Frame = -1 Query: 422 LYAKVHHCVSCAIHAHI 372 LYAK +CVSCAIH+H+ Sbjct: 67 LYAKTQYCVSCAIHSHV 83
>RS26_DROME (P13008) 40S ribosomal protein S26 (DS31)| Length = 114 Score = 33.9 bits (76), Expect = 0.16 Identities = 12/17 (70%), Positives = 16/17 (94%) Frame = -1 Query: 422 LYAKVHHCVSCAIHAHI 372 LYAK+H+CVSCAIH+ + Sbjct: 67 LYAKLHYCVSCAIHSKV 83
>RS26_ANOGA (Q9GT45) 40S ribosomal protein S26| Length = 114 Score = 33.9 bits (76), Expect = 0.16 Identities = 12/17 (70%), Positives = 16/17 (94%) Frame = -1 Query: 422 LYAKVHHCVSCAIHAHI 372 LYAK+H+CVSCAIH+ + Sbjct: 66 LYAKLHYCVSCAIHSKV 82
>RS26_SCHCO (O93931) 40S ribosomal protein S26| Length = 126 Score = 32.3 bits (72), Expect = 0.46 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = -1 Query: 422 LYAKVHHCVSCAIHAHI 372 LY K+ +CVSCAIH+H+ Sbjct: 67 LYIKIAYCVSCAIHSHV 83
>RS26_SHEEP (Q6Q312) 40S ribosomal protein S26| Length = 114 Score = 32.3 bits (72), Expect = 0.46 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = -1 Query: 422 LYAKVHHCVSCAIHAHI 372 LY K+H+CVSCAIH+ + Sbjct: 66 LYVKLHYCVSCAIHSKV 82
>RS26_RAT (P62856) 40S ribosomal protein S26| Length = 114 Score = 32.3 bits (72), Expect = 0.46 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = -1 Query: 422 LYAKVHHCVSCAIHAHI 372 LY K+H+CVSCAIH+ + Sbjct: 66 LYVKLHYCVSCAIHSKV 82
>RS26_PIG (P49171) 40S ribosomal protein S26| Length = 114 Score = 32.3 bits (72), Expect = 0.46 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = -1 Query: 422 LYAKVHHCVSCAIHAHI 372 LY K+H+CVSCAIH+ + Sbjct: 66 LYVKLHYCVSCAIHSKV 82
>RS26_MOUSE (P62855) 40S ribosomal protein S26| Length = 114 Score = 32.3 bits (72), Expect = 0.46 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = -1 Query: 422 LYAKVHHCVSCAIHAHI 372 LY K+H+CVSCAIH+ + Sbjct: 66 LYVKLHYCVSCAIHSKV 82
>RS26_MACFA (P61251) 40S ribosomal protein S26| Length = 114 Score = 32.3 bits (72), Expect = 0.46 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = -1 Query: 422 LYAKVHHCVSCAIHAHI 372 LY K+H+CVSCAIH+ + Sbjct: 66 LYVKLHYCVSCAIHSKV 82
>RS26_HUMAN (P62854) 40S ribosomal protein S26| Length = 114 Score = 32.3 bits (72), Expect = 0.46 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = -1 Query: 422 LYAKVHHCVSCAIHAHI 372 LY K+H+CVSCAIH+ + Sbjct: 66 LYVKLHYCVSCAIHSKV 82
>RS26B_YEAST (P39939) 40S ribosomal protein S26-B| Length = 119 Score = 32.0 bits (71), Expect = 0.61 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = -1 Query: 419 YAKVHHCVSCAIHAHI 372 Y K+H+CVSCAIHA I Sbjct: 68 YNKLHYCVSCAIHARI 83
>RS26A_YEAST (P39938) 40S ribosomal protein S26-A| Length = 119 Score = 32.0 bits (71), Expect = 0.61 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = -1 Query: 419 YAKVHHCVSCAIHAHI 372 Y K+H+CVSCAIHA I Sbjct: 68 YNKLHYCVSCAIHARI 83
>RS26_BRUPA (P41959) 40S ribosomal protein S26 (Fragment)| Length = 83 Score = 31.6 bits (70), Expect = 0.79 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = -1 Query: 422 LYAKVHHCVSCAIHAHI 372 LY K+H+CVSCAIH+ + Sbjct: 67 LYHKLHYCVSCAIHSKV 83
>T22D2_HUMAN (O75157) TSC22 domain family protein 2 (TSC22-related-inducible| leucine zipper protein 4) Length = 780 Score = 30.8 bits (68), Expect = 1.4 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = -2 Query: 394 LVPSMLTLSVSAPVRTGGTVSPRSVSGAGTTALGLDKVARP 272 L+ L + +AP GG VS RSVSGA + L + P Sbjct: 89 LLDGQLAAAAAAPANGGGVVSARSVSGALASTLAAAATSAP 129
>RS26_CRICR (P30742) 40S ribosomal protein S26| Length = 114 Score = 30.8 bits (68), Expect = 1.4 Identities = 10/17 (58%), Positives = 15/17 (88%) Frame = -1 Query: 422 LYAKVHHCVSCAIHAHI 372 LY ++H+CVSCAIH+ + Sbjct: 66 LYVELHYCVSCAIHSKV 82
>RS26A_SCHPO (Q9UT56) 40S ribosomal protein S26-A| Length = 120 Score = 30.0 bits (66), Expect = 2.3 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = -1 Query: 422 LYAKVHHCVSCAIHAHI 372 +Y K+ +CVSCAIHA + Sbjct: 67 IYVKLQYCVSCAIHARV 83
>DHAS_PROMA (P49420) Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (ASA| dehydrogenase) (ASADH) Length = 343 Score = 30.0 bits (66), Expect = 2.3 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -2 Query: 415 PRCTTVFLVPSMLTLSVSAPVRTGGTVSPRSVSGAGTTAL 296 P CTT+ L + LS P++ + +S SGAG A+ Sbjct: 135 PNCTTILLALVLAPLSAQLPIKRVVVSTYQSASGAGARAM 174
>RS26_OXYNO (Q9BHU1) 40S ribosomal protein S26| Length = 125 Score = 30.0 bits (66), Expect = 2.3 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = -1 Query: 422 LYAKVHHCVSCAIHAHI 372 +Y K+ +CVSCAIHA I Sbjct: 69 IYVKLSYCVSCAIHARI 85
>RS26_OCTVU (P27085) 40S ribosomal protein S26| Length = 127 Score = 30.0 bits (66), Expect = 2.3 Identities = 12/17 (70%), Positives = 15/17 (88%) Frame = -1 Query: 422 LYAKVHHCVSCAIHAHI 372 LYAK+ +CVSCAIH+ I Sbjct: 67 LYAKLLYCVSCAIHSKI 83
>RS26_CAEEL (O45499) 40S ribosomal protein S26| Length = 117 Score = 30.0 bits (66), Expect = 2.3 Identities = 9/17 (52%), Positives = 15/17 (88%) Frame = -1 Query: 422 LYAKVHHCVSCAIHAHI 372 LY K+H+C++CAIH+ + Sbjct: 67 LYHKLHYCIACAIHSKV 83
>RS26B_SCHPO (Q9UTG4) 40S ribosomal protein S26-B| Length = 119 Score = 29.3 bits (64), Expect = 3.9 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = -1 Query: 422 LYAKVHHCVSCAIHAHI 372 LY K+ +CVSCAIH+ + Sbjct: 67 LYIKLQYCVSCAIHSRV 83
>GATA_CAUCR (Q9A5L0) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 489 Score = 28.9 bits (63), Expect = 5.1 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%) Frame = +2 Query: 38 EIVKI*RPDHKLCLTNQLSVQPIAAKTRIVQYPGMS---KTRAGTITEAYSQTRS 193 EIV I P K L V P A + + +Y GM + +TE Y TR+ Sbjct: 296 EIVDISLPHTKYALPAYYIVAPAEASSNLARYDGMRYGLREEGANLTEIYENTRA 350
>SYI_THETN (Q8R9L3) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 932 Score = 28.9 bits (63), Expect = 5.1 Identities = 15/57 (26%), Positives = 22/57 (38%) Frame = +2 Query: 8 QKVLSDIDSSEIVKI*RPDHKLCLTNQLSVQPIAAKTRIVQYPGMSKTRAGTITEAY 178 +++ D E P H C+ + S+ K R+ YP SK R T Y Sbjct: 695 KQLTESFDKYEFYDFFHPVHNFCVVDMSSLYLDILKDRLYTYPAKSKERKAAQTTLY 751
>SURE_DEHE1 (Q3Z8C0) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 265 Score = 28.9 bits (63), Expect = 5.1 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +2 Query: 26 IDSSEIVKI*RPDHKLCLTNQLSVQPIAAKTRI 124 I + + I PD LC N+L V P+A KT I Sbjct: 158 ISKNSFLNINTPDLPLCRINELRVTPLAHKTHI 190
>RS26_NEUCR (P21772) 40S ribosomal protein S26E (CRP5) (13.6 kDa ribosomal| protein) Length = 119 Score = 28.1 bits (61), Expect = 8.8 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -1 Query: 422 LYAKVHHCVSCAIHAHI 372 +Y K+ +CVSCAIH I Sbjct: 67 MYLKLQYCVSCAIHGKI 83 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,715,645 Number of Sequences: 219361 Number of extensions: 546107 Number of successful extensions: 1536 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 1516 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1536 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
