ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet29c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473089.1| Oryza sativa (japonica cultivar-group), predic... 182 6e-43
2emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4,... 182 6e-43
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 182 6e-43
4dbj|AK104903.1| Oryza sativa (japonica cultivar-group) cDNA clon... 182 6e-43
5dbj|AK066703.1| Oryza sativa (japonica cultivar-group) cDNA clon... 182 6e-43
6emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 182 6e-43
7gb|AC053544.5| Homo sapiens BAC clone RP11-793B9 from 4, complet... 48 0.024
8gb|AC114001.5| Mus musculus BAC clone RP23-162H9 from X, complet... 44 0.38
9gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 42 1.5
10gb|AC091495.4| Homo sapiens chromosome 18, clone RP11-894D23, co... 42 1.5
11gb|AC009899.12| Homo sapiens chromosome 18, clone RP11-19F9, com... 42 1.5
12gb|AY110587.1| Zea mays CL36199_1 mRNA sequence 42 1.5
13ref|NM_194512.1| Oryza sativa (japonica cultivar-group) putative... 40 5.9
14gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 5.9
15gb|AC069324.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
16gb|AC123819.2| Mus musculus BAC clone RP23-460M11 from chromosom... 40 5.9
17gb|AC007030.3| Homo sapiens PAC clone RP5-1112I4 from 7, complet... 40 5.9
18emb|CR812472.9| Zebrafish DNA sequence from clone DKEY-110G7 in ... 40 5.9
19emb|AL356454.15| Human DNA sequence from clone RP11-458J24 on ch... 40 5.9
20gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
21emb|AL626785.26| Mouse DNA sequence from clone RP23-220F20 on ch... 40 5.9
22emb|BX897692.16| Zebrafish DNA sequence from clone DKEY-34F9 in ... 40 5.9
23gb|AC091991.2| Homo sapiens chromosome 5 clone RP11-86C20, compl... 40 5.9
24dbj|AK027276.1| Homo sapiens cDNA FLJ14370 fis, clone HEMBA1001235 40 5.9
25gb|AC103969.4| Homo sapiens chromosome 15, clone RP11-876F5, com... 40 5.9
26gb|AC022099.8| Homo sapiens chromosome 5 clone CTB-63N19, comple... 40 5.9
27gb|AC095063.2| Homo sapiens BAC clone RP11-533K12 from 4, comple... 40 5.9
28gb|AF165818.4|AF165818 Guillardia theta nucleomorph chromosome 1... 40 5.9
29gb|AC010244.6| Homo sapiens chromosome 5 clone CTC-364B20, compl... 40 5.9
30dbj|AK036131.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 40 5.9
31emb|BX322541.12| Zebrafish DNA sequence from clone DKEY-78P10 in... 40 5.9
32dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
33gb|AC079816.31| Mus musculus strain C57BL/6J chromosome 11 clone... 40 5.9
34emb|AJ457052.1|LES457052 Lycopersicon esculentum hero gene for h... 40 5.9
35dbj|AK072615.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
36dbj|AK061301.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
37emb|BX004815.6| Zebrafish DNA sequence from clone CH211-31O18 in... 40 5.9
38dbj|AK114005.1| Ciona intestinalis cDNA, clone:cicl021d23, full ... 40 5.9
39gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9 
>ref|XM_473089.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1365

 Score =  182 bits (92), Expect = 6e-43
 Identities = 125/136 (91%)
 Strand = Plus / Minus

                                                                        
Query: 302  ggtcttggtcctgtggaagaagccggcgcactcctcgtgcgaccgctggttgggcgcata 361
            ||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct: 1233 ggtcttggtccggtggaagaaggcggcgcactcgtcgtgcgaccgctggttgggcgcgta 1174

                                                                        
Query: 362  ggggatgcagttgcgggcgacgttgagcttcccctgcttgatcagggcccagcagcacga 421
             ||||||||||||||| |||||||||||||||||| |||||||||| |||||||||| ||
Sbjct: 1173 cgggatgcagttgcggtcgacgttgagcttcccctccttgatcaggtcccagcagcagga 1114

                            
Query: 422  ccccagcgacgtgaag 437
             || ||||||||||||
Sbjct: 1113 gccgagcgacgtgaag 1098



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 198  tgcagcgccgagtaggtccggtacttgttctcctccgacgccg 240
            |||||||||||||| |||| |||||||| |||||||| |||||
Sbjct: 1358 tgcagcgccgagtaagtcctgtacttgtcctcctccgccgccg 1316
to top
>emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0116K07,
             complete sequence
          Length = 130779

 Score =  182 bits (92), Expect = 6e-43
 Identities = 125/136 (91%)
 Strand = Plus / Minus

                                                                         
Query: 302   ggtcttggtcctgtggaagaagccggcgcactcctcgtgcgaccgctggttgggcgcata 361
             ||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct: 76162 ggtcttggtccggtggaagaaggcggcgcactcgtcgtgcgaccgctggttgggcgcgta 76103

                                                                         
Query: 362   ggggatgcagttgcgggcgacgttgagcttcccctgcttgatcagggcccagcagcacga 421
              ||||||||||||||| |||||||||||||||||| |||||||||| |||||||||| ||
Sbjct: 76102 cgggatgcagttgcggtcgacgttgagcttcccctccttgatcaggtcccagcagcagga 76043

                             
Query: 422   ccccagcgacgtgaag 437
              || ||||||||||||
Sbjct: 76042 gccgagcgacgtgaag 76027



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                        
Query: 198   tgcagcgccgagtaggtccggtacttgttctcctccgacgccg 240
             |||||||||||||| |||| |||||||| |||||||| |||||
Sbjct: 76287 tgcagcgccgagtaagtcctgtacttgtcctcctccgccgccg 76245
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  182 bits (92), Expect = 6e-43
 Identities = 125/136 (91%)
 Strand = Plus / Minus

                                                                            
Query: 302      ggtcttggtcctgtggaagaagccggcgcactcctcgtgcgaccgctggttgggcgcata 361
                ||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct: 25194495 ggtcttggtccggtggaagaaggcggcgcactcgtcgtgcgaccgctggttgggcgcgta 25194436

                                                                            
Query: 362      ggggatgcagttgcgggcgacgttgagcttcccctgcttgatcagggcccagcagcacga 421
                 ||||||||||||||| |||||||||||||||||| |||||||||| |||||||||| ||
Sbjct: 25194435 cgggatgcagttgcggtcgacgttgagcttcccctccttgatcaggtcccagcagcagga 25194376

                                
Query: 422      ccccagcgacgtgaag 437
                 || ||||||||||||
Sbjct: 25194375 gccgagcgacgtgaag 25194360



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                           
Query: 198      tgcagcgccgagtaggtccggtacttgttctcctccgacgccg 240
                |||||||||||||| |||| |||||||| |||||||| |||||
Sbjct: 25194620 tgcagcgccgagtaagtcctgtacttgtcctcctccgccgccg 25194578
to top
>dbj|AK104903.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-F07, full
            insert sequence
          Length = 1666

 Score =  182 bits (92), Expect = 6e-43
 Identities = 125/136 (91%)
 Strand = Plus / Minus

                                                                        
Query: 302  ggtcttggtcctgtggaagaagccggcgcactcctcgtgcgaccgctggttgggcgcata 361
            ||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct: 1261 ggtcttggtccggtggaagaaggcggcgcactcgtcgtgcgaccgctggttgggcgcgta 1202

                                                                        
Query: 362  ggggatgcagttgcgggcgacgttgagcttcccctgcttgatcagggcccagcagcacga 421
             ||||||||||||||| |||||||||||||||||| |||||||||| |||||||||| ||
Sbjct: 1201 cgggatgcagttgcggtcgacgttgagcttcccctccttgatcaggtcccagcagcagga 1142

                            
Query: 422  ccccagcgacgtgaag 437
             || ||||||||||||
Sbjct: 1141 gccgagcgacgtgaag 1126



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 198  tgcagcgccgagtaggtccggtacttgttctcctccgacgccg 240
            |||||||||||||| |||| |||||||| |||||||| |||||
Sbjct: 1386 tgcagcgccgagtaagtcctgtacttgtcctcctccgccgccg 1344
to top
>dbj|AK066703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075O17, full
            insert sequence
          Length = 1794

 Score =  182 bits (92), Expect = 6e-43
 Identities = 125/136 (91%)
 Strand = Plus / Minus

                                                                        
Query: 302  ggtcttggtcctgtggaagaagccggcgcactcctcgtgcgaccgctggttgggcgcata 361
            ||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct: 1394 ggtcttggtccggtggaagaaggcggcgcactcgtcgtgcgaccgctggttgggcgcgta 1335

                                                                        
Query: 362  ggggatgcagttgcgggcgacgttgagcttcccctgcttgatcagggcccagcagcacga 421
             ||||||||||||||| |||||||||||||||||| |||||||||| |||||||||| ||
Sbjct: 1334 cgggatgcagttgcggtcgacgttgagcttcccctccttgatcaggtcccagcagcagga 1275

                            
Query: 422  ccccagcgacgtgaag 437
             || ||||||||||||
Sbjct: 1274 gccgagcgacgtgaag 1259



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 198  tgcagcgccgagtaggtccggtacttgttctcctccgacgccg 240
            |||||||||||||| |||| |||||||| |||||||| |||||
Sbjct: 1519 tgcagcgccgagtaagtcctgtacttgtcctcctccgccgccg 1477
to top
>emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0014K14,
              complete sequence
          Length = 150187

 Score =  182 bits (92), Expect = 6e-43
 Identities = 125/136 (91%)
 Strand = Plus / Minus

                                                                          
Query: 302    ggtcttggtcctgtggaagaagccggcgcactcctcgtgcgaccgctggttgggcgcata 361
              ||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct: 141922 ggtcttggtccggtggaagaaggcggcgcactcgtcgtgcgaccgctggttgggcgcgta 141863

                                                                          
Query: 362    ggggatgcagttgcgggcgacgttgagcttcccctgcttgatcagggcccagcagcacga 421
               ||||||||||||||| |||||||||||||||||| |||||||||| |||||||||| ||
Sbjct: 141862 cgggatgcagttgcggtcgacgttgagcttcccctccttgatcaggtcccagcagcagga 141803

                              
Query: 422    ccccagcgacgtgaag 437
               || ||||||||||||
Sbjct: 141802 gccgagcgacgtgaag 141787



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                         
Query: 198    tgcagcgccgagtaggtccggtacttgttctcctccgacgccg 240
              |||||||||||||| |||| |||||||| |||||||| |||||
Sbjct: 142047 tgcagcgccgagtaagtcctgtacttgtcctcctccgccgccg 142005
to top
>gb|AC053544.5| Homo sapiens BAC clone RP11-793B9 from 4, complete sequence
          Length = 187332

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 114  tgcattcccaatttgtttttcagc 137
            ||||||||||||||||||||||||
Sbjct: 4192 tgcattcccaatttgtttttcagc 4169
to top
>gb|AC114001.5| Mus musculus BAC clone RP23-162H9 from X, complete sequence
          Length = 210319

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 170    ctgctgctgggagccacggact 191
              ||||||||||||||||||||||
Sbjct: 148366 ctgctgctgggagccacggact 148345
to top
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 408     gcccagcagcacgaccccagcgacg 432
               |||||||||||||||||| ||||||
Sbjct: 4846757 gcccagcagcacgaccccggcgacg 4846781
to top
>gb|AC091495.4| Homo sapiens chromosome 18, clone RP11-894D23, complete sequence
          Length = 158458

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 50     aaataaaatatcaacacaaac 70
              |||||||||||||||||||||
Sbjct: 115243 aaataaaatatcaacacaaac 115263
to top
>gb|AC009899.12| Homo sapiens chromosome 18, clone RP11-19F9, complete sequence
          Length = 164359

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 50     aaataaaatatcaacacaaac 70
              |||||||||||||||||||||
Sbjct: 129321 aaataaaatatcaacacaaac 129301
to top
>gb|AY110587.1| Zea mays CL36199_1 mRNA sequence
          Length = 714

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 48  tgaaataaaatatcaacacaa 68
           |||||||||||||||||||||
Sbjct: 636 tgaaataaaatatcaacacaa 656
to top
>ref|NM_194512.1| Oryza sativa (japonica cultivar-group) putative maize transposon MuDR
            mudrA-like protein (OSJNBa0071K19.12), mRNA
          Length = 2814

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 109  acaggtgcattcccaatttg 128
            ||||||||||||||||||||
Sbjct: 2487 acaggtgcattcccaatttg 2468
to top
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 288     ctgacggggcacgtggtctt 307
               ||||||||||||||||||||
Sbjct: 1711673 ctgacggggcacgtggtctt 1711692
to top
>gb|AC069324.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0071K19,
              complete sequence
          Length = 174752

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    acaggtgcattcccaatttg 128
              ||||||||||||||||||||
Sbjct: 106165 acaggtgcattcccaatttg 106184
to top
>gb|AC123819.2| Mus musculus BAC clone RP23-460M11 from chromosome 8, complete sequence
          Length = 202899

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    tgaaataaaatatcaacaca 67
             ||||||||||||||||||||
Sbjct: 74047 tgaaataaaatatcaacaca 74066
to top
>gb|AC007030.3| Homo sapiens PAC clone RP5-1112I4 from 7, complete sequence
          Length = 117853

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 397    gcttgatcagggcccagcag 416
              ||||||||||||||||||||
Sbjct: 115757 gcttgatcagggcccagcag 115776
to top
>emb|CR812472.9| Zebrafish DNA sequence from clone DKEY-110G7 in linkage group 3,
             complete sequence
          Length = 194804

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 383   gttgagcttcccctgcttga 402
             ||||||||||||||||||||
Sbjct: 84842 gttgagcttcccctgcttga 84823
to top
>emb|AL356454.15| Human DNA sequence from clone RP11-458J24 on chromosome 6, complete
             sequence
          Length = 174333

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    ataataaatacttagaaaag 35
             ||||||||||||||||||||
Sbjct: 66493 ataataaatacttagaaaag 66474
to top
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
              Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    acaggtgcattcccaatttg 128
              ||||||||||||||||||||
Sbjct: 341107 acaggtgcattcccaatttg 341126
to top
>emb|AL626785.26| Mouse DNA sequence from clone RP23-220F20 on chromosome 11 Contains a
             novel gene, the 3'  end of the Mmd gene for monocyte to
             macrophage differentiation-associated and the 3' end of
             the Hlf gene for hepatic leukemia factor, complete
             sequence
          Length = 172696

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 178   gggagccacggactcacgggtgca 201
             ||||||||| ||||||||||||||
Sbjct: 61203 gggagccacagactcacgggtgca 61180
to top
>emb|BX897692.16| Zebrafish DNA sequence from clone DKEY-34F9 in linkage group 9, complete
              sequence
          Length = 185941

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    gtgcattcccaatttgtttt 132
              ||||||||||||||||||||
Sbjct: 160539 gtgcattcccaatttgtttt 160558
to top
>gb|AC091991.2| Homo sapiens chromosome 5 clone RP11-86C20, complete sequence
          Length = 170219

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 108   cacaggtgcattcccaatttgtttttca 135
             |||||||| | |||||||||||||||||
Sbjct: 67551 cacaggtgaaatcccaatttgtttttca 67578
to top
>dbj|AK027276.1| Homo sapiens cDNA FLJ14370 fis, clone HEMBA1001235
          Length = 1813

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 397  gcttgatcagggcccagcag 416
            ||||||||||||||||||||
Sbjct: 1608 gcttgatcagggcccagcag 1589
to top
>gb|AC103969.4| Homo sapiens chromosome 15, clone RP11-876F5, complete sequence
          Length = 121054

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    agaaaagtacacacgatttt 48
             ||||||||||||||||||||
Sbjct: 11007 agaaaagtacacacgatttt 10988
to top
>gb|AC022099.8| Homo sapiens chromosome 5 clone CTB-63N19, complete sequence
          Length = 122873

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 108   cacaggtgcattcccaatttgtttttca 135
             |||||||| | |||||||||||||||||
Sbjct: 84148 cacaggtgaaatcccaatttgtttttca 84175
to top
>gb|AC095063.2| Homo sapiens BAC clone RP11-533K12 from 4, complete sequence
          Length = 153814

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    tgaaataaaatatcaacaca 67
             ||||||||||||||||||||
Sbjct: 17703 tgaaataaaatatcaacaca 17722
to top
>gb|AF165818.4|AF165818 Guillardia theta nucleomorph chromosome 1, complete sequence
          Length = 196216

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 44     attttgaaataaaatatcaa 63
              ||||||||||||||||||||
Sbjct: 146682 attttgaaataaaatatcaa 146701
to top
>gb|AC010244.6| Homo sapiens chromosome 5 clone CTC-364B20, complete sequence
          Length = 134937

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 108   cacaggtgcattcccaatttgtttttca 135
             |||||||| | |||||||||||||||||
Sbjct: 76686 cacaggtgaaatcccaatttgtttttca 76659
to top
>dbj|AK036131.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:9630038C08
            product:unclassifiable, full insert sequence
          Length = 3133

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 178  gggagccacggactcacgggtgca 201
            ||||||||| ||||||||||||||
Sbjct: 1953 gggagccacagactcacgggtgca 1930
to top
>emb|BX322541.12| Zebrafish DNA sequence from clone DKEY-78P10 in linkage group 5, complete
              sequence
          Length = 227940

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     aagtacacacgattttgaaa 52
              ||||||||||||||||||||
Sbjct: 145892 aagtacacacgattttgaaa 145873
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10,
              complete sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    acaggtgcattcccaatttg 128
              ||||||||||||||||||||
Sbjct: 341107 acaggtgcattcccaatttg 341126
to top
>gb|AC079816.31| Mus musculus strain C57BL/6J chromosome 11 clone rp23-220f20, complete
             sequence
          Length = 172680

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 178   gggagccacggactcacgggtgca 201
             ||||||||| ||||||||||||||
Sbjct: 61272 gggagccacagactcacgggtgca 61249
to top
>emb|AJ457052.1|LES457052 Lycopersicon esculentum hero gene for hero resistance protein, exons
            2-3
          Length = 11416

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 46   tttgaaataaaatatcaaca 65
            ||||||||||||||||||||
Sbjct: 2954 tttgaaataaaatatcaaca 2935
to top
>dbj|AK072615.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134C11, full
            insert sequence
          Length = 3124

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 109  acaggtgcattcccaatttg 128
            ||||||||||||||||||||
Sbjct: 2414 acaggtgcattcccaatttg 2395
to top
>dbj|AK061301.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-F03, full
            insert sequence
          Length = 1351

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 198  tgcagcgccgagtaggtccggtacttgt 225
            |||||||||||||| |||| ||||||||
Sbjct: 1071 tgcagcgccgagtaagtcctgtacttgt 1044
to top
>emb|BX004815.6| Zebrafish DNA sequence from clone CH211-31O18 in linkage group 9,
             complete sequence
          Length = 172899

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    attttgaaataaaatatcaa 63
             ||||||||||||||||||||
Sbjct: 42499 attttgaaataaaatatcaa 42480
to top
>dbj|AK114005.1| Ciona intestinalis cDNA, clone:cicl021d23, full insert sequence
          Length = 1936

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 50   aaataaaatatcaacacaaa 69
            ||||||||||||||||||||
Sbjct: 1912 aaataaaatatcaacacaaa 1931
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    acaggtgcattcccaatttg 128
              ||||||||||||||||||||
Sbjct: 341104 acaggtgcattcccaatttg 341123


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,782,488
Number of Sequences: 3902068
Number of extensions: 3782488
Number of successful extensions: 80764
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80526
Number of HSP's gapped (non-prelim): 238
length of query: 437
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 415
effective length of database: 17,147,199,772
effective search space: 7116087905380
effective search space used: 7116087905380
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top