>SMYD4_PONPY (Q5R5X9) SET and MYND domain-containing protein 4|
          Length = 804

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 329 YCHRCIKLLAGVLSCSGCS 385
           YCHRC+K     + C GCS
Sbjct: 295 YCHRCLKHTLATVPCDGCS 313

>SMYD4_HUMAN (Q8IYR2) SET and MYND domain-containing protein 4|
          Length = 804

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 329 YCHRCIKLLAGVLSCSGCS 385
           YCHRC+K     + C GCS
Sbjct: 295 YCHRCLKHTLATVPCDGCS 313

>SMYD4_CHICK (Q5F3V0) SET and MYND domain-containing protein 4|
          Length = 742

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 329 YCHRCIKLLAGVLSCSGCS 385
           YCH C+K L   + C GCS
Sbjct: 294 YCHHCLKQLLASIPCCGCS 312

>LIPA3_MOUSE (P60469) Liprin-alpha-3 (Protein tyrosine phosphatase receptor type|
           f polypeptide-interacting protein alpha-3)
           (PTPRF-interacting protein alpha-3)
          Length = 1043

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 5/81 (6%)
 Frame = -3

Query: 423 PPGGGHQGARLLPEQPEQLSTPANNLMQRWQYCSSCPSGAS*PQTDGLRVGSTAPPSCPS 244
           PP  GH   RL P  P +  T   N + + +        A  P+ +G  V    PP  P 
Sbjct: 518 PPSSGHSTPRLAPPSPAREGTDKTNHVSKEE--------AGVPRGEGPAVPGDTPPPTPR 569

Query: 243 G-----LVQCLCMHVSEREKG 196
                 + Q L +     E G
Sbjct: 570 SARLERMAQALALQAGSPEDG 590

>COL39_CAEEL (Q09455) Cuticle collagen 39 precursor|
          Length = 323

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 22/60 (36%), Positives = 27/60 (45%)
 Frame = +2

Query: 245 DGHDGGAVLPTRSPSVCG*LAPDGHEEQYCHRCIKLLAGVLSCSGCSGRSRAP*WPPPGG 424
           DG  GGA  P + P V G   P  HE+Q C +C          +G  G + AP  P P G
Sbjct: 107 DGQPGGAGNPGQ-PGVAG---PKSHEQQECIKC---------PAGSPGPAGAPGAPGPQG 153

>NRBP_PONPY (Q5RBH9) Nuclear receptor-binding protein|
          Length = 535

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 133 IRQH*RRQGVITEE*KRRSMVAFLSLTHMHAQTLNEAGWARW 258
           I+++  R   ITE     S+  FL  T  + +T+NE  W RW
Sbjct: 139 IKENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRW 180

>NRBP_MACFA (Q4R8X0) Nuclear receptor-binding protein|
          Length = 535

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 133 IRQH*RRQGVITEE*KRRSMVAFLSLTHMHAQTLNEAGWARW 258
           I+++  R   ITE     S+  FL  T  + +T+NE  W RW
Sbjct: 139 IKENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRW 180

>NRBP_HUMAN (Q9UHY1) Nuclear receptor-binding protein|
          Length = 535

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 133 IRQH*RRQGVITEE*KRRSMVAFLSLTHMHAQTLNEAGWARW 258
           I+++  R   ITE     S+  FL  T  + +T+NE  W RW
Sbjct: 139 IKENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRW 180

>CRTA_RHOCA (P17055) Spheroidene monooxygenase (EC 1.-.-.-)|
          Length = 241

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = +1

Query: 190 MVAFLSLTHMHAQTLNEAGWARWRSSTANTKPVRLWLASAGWTRGAVLP 336
           M AF +       T N   W RWR+  A T  + L   SA  T G V P
Sbjct: 63  MAAFDTEADARDVTANHPVWKRWRAHAAETLVLHLQPLSARGTWGGVNP 111

>CATA_BACST (P14412) Peroxidase/catalase (EC 1.11.1.6) (Catalase-peroxidase)|
          Length = 735

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 191 WWPFSLSLTCMHRH*TRPDGHD 256
           WWP  L+L+ +H+H  + + HD
Sbjct: 31  WWPNQLNLSILHQHDRKTNPHD 52

>NRBP_MOUSE (Q99J45) Nuclear receptor-binding protein (MLF1 adapter molecule)|
           (HLS7-interacting protein kinase)
          Length = 535

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 133 IRQH*RRQGVITEE*KRRSMVAFLSLTHMHAQTLNEAGWARW 258
           ++++  R   ITE     S+  FL  T  + +T+NE  W RW
Sbjct: 139 VKENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRW 180

>EX5B_HAEIN (P45157) Exodeoxyribonuclease V beta chain (EC 3.1.11.5)|
          Length = 1211

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 19/61 (31%), Positives = 25/61 (40%)
 Frame = +1

Query: 202 LSLTHMHAQTLNEAGWARWRSSTANTKPVRLWLASAGWTRGAVLPPLH*IIGRRAQLLRL 381
           L+   +H    NEA W RW  S A  +          W R  +L  LH I+  +    RL
Sbjct: 651 LNAADIHQIQQNEADWQRWADSFAQYQQT--------WQRQGILAMLHQILLEQGISERL 702

Query: 382 L 384
           L
Sbjct: 703 L 703

>SMYD4_MOUSE (Q8BTK5) SET and MYND domain-containing protein 4|
          Length = 799

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 329 YCHRCIKLLAGVLSCSGCS 385
           YCHRC+K     + C  CS
Sbjct: 295 YCHRCLKHTLATVPCGSCS 313

>LIPA3_HUMAN (O75145) Liprin-alpha-3 (Protein tyrosine phosphatase receptor type|
           f polypeptide-interacting protein alpha-3)
           (PTPRF-interacting protein alpha-3)
          Length = 1194

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 5/81 (6%)
 Frame = -3

Query: 423 PPGGGHQGARLLPEQPEQLSTPANNLMQRWQYCSSCPSGAS*PQTDGLRVGSTAPPSCPS 244
           PP  GH   RL P  P +  T   N + + +        A  P+ +G  +    PP  P 
Sbjct: 669 PPSSGHSTPRLAPPSPAREGTDKANHVPKEE--------AGAPRGEGPAIPGDTPPPTPR 720

Query: 243 G-----LVQCLCMHVSEREKG 196
                 + Q L +     E G
Sbjct: 721 SARLERMTQALALQAGSLEDG 741

>POL_HV1A2 (P03369) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1436

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 417 GGGHQGARLLPEQPEQLSTPANNLMQRWQY 328
           G GH+ AR+L E   Q++ PAN +MQR  +
Sbjct: 356 GPGHK-ARVLAEAMSQVTNPANIMMQRGNF 384

>GAG_HV1A2 (P03349) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 501

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 417 GGGHQGARLLPEQPEQLSTPANNLMQRWQY 328
           G GH+ AR+L E   Q++ PAN +MQR  +
Sbjct: 356 GPGHK-ARVLAEAMSQVTNPANIMMQRGNF 384

>BAI2_HUMAN (O60241) Brain-specific angiogenesis inhibitor 2 precursor|
          Length = 1572

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 423 PPGGGHQGARLLPEQPEQLS 364
           PPG GH   RLLP  P++ S
Sbjct: 781 PPGPGHSHQRLLPADPDESS 800


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,779,584
Number of Sequences: 219361
Number of extensions: 1154954
Number of successful extensions: 2862
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2862
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)