ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet27e07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_627338.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd8_4520), partial mRNA Length = 6669 Score = 40.1 bits (20), Expect = 0.72 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 attaatgcaagaattaatct 30 |||||||||||||||||||| Sbjct: 3234 attaatgcaagaattaatct 3215
>gb|AC139171.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0024B09, complete sequence Length = 132563 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 ttaatgcaagaattaatct 30 ||||||||||||||||||| Sbjct: 81883 ttaatgcaagaattaatct 81901
>ref|XM_660216.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.20432) partial mRNA Length = 2466 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 ttaattaatgcaagaatta 26 ||||||||||||||||||| Sbjct: 82 ttaattaatgcaagaatta 100
>gb|AC092668.2| Homo sapiens BAC clone RP11-553F8 from 4, complete sequence Length = 167570 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 tcttaattaatgcaagaat 24 ||||||||||||||||||| Sbjct: 27476 tcttaattaatgcaagaat 27458
>ref|XM_626587.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd2_4050), partial mRNA Length = 2466 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 ttaattaatgcaagaatta 26 ||||||||||||||||||| Sbjct: 82 ttaattaatgcaagaatta 100
>gb|AY987040.1| Oryza sativa (japonica cultivar-group) EUI gene, complete cds Length = 13120 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 taattaatgcaagaattaa 27 ||||||||||||||||||| Sbjct: 5179 taattaatgcaagaattaa 5197
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 ttaatgcaagaattaatct 30 ||||||||||||||||||| Sbjct: 10341978 ttaatgcaagaattaatct 10341996
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 taattaatgcaagaattaa 27 ||||||||||||||||||| Sbjct: 23586109 taattaatgcaagaattaa 23586127
>gb|AC007947.5|AC007947 Drosophila melanogaster, chromosome 3R, region 98F-98F, BAC clone BACR11O03, complete sequence Length = 168505 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 23 attaatcttggagcacaaa 41 ||||||||||||||||||| Sbjct: 104077 attaatcttggagcacaaa 104095
>gb|AE003768.2| Drosophila melanogaster chromosome 3R, section 106 of 118 of the complete sequence Length = 243118 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 23 attaatcttggagcacaaa 41 ||||||||||||||||||| Sbjct: 34780 attaatcttggagcacaaa 34798
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 ttaatgcaagaattaatct 30 ||||||||||||||||||| Sbjct: 10413675 ttaatgcaagaattaatct 10413693
>gb|AC172110.2| Rhesus Macaque CHR7 BAC CH250-119L7 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 219949 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 5 atcttaattaatgcaagaa 23 ||||||||||||||||||| Sbjct: 46295 atcttaattaatgcaagaa 46313
>gb|AC137619.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0095J22, complete sequence Length = 151730 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 taattaatgcaagaattaa 27 ||||||||||||||||||| Sbjct: 123281 taattaatgcaagaattaa 123299 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 464,313 Number of Sequences: 3902068 Number of extensions: 464313 Number of successful extensions: 32509 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32409 Number of HSP's gapped (non-prelim): 100 length of query: 72 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 51 effective length of database: 17,151,101,840 effective search space: 874706193840 effective search space used: 874706193840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
