ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet27e03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ006296.1|HVU6296 Hordeum vulgare partial mRNA for chloroph... 325 3e-86
2emb|Z50801.1|ZMCABCP29 Z.mays mRNA for chlorophyll a/b-binding p... 44 0.14
3gb|AY103995.1| Zea mays PCO102677 mRNA sequence 44 0.14
4gb|AC003680.3| Arabidopsis thaliana chromosome 2 BAC F17K2 genom... 42 0.56
5ref|XM_477163.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.2
6emb|BX842653.1| Bdellovibrio bacteriovorus complete genome, stra... 40 2.2
7gb|AC026101.24| Homo sapiens 3 BAC RP11-441D23 (Roswell Park Can... 40 2.2
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.2
9dbj|AP005764.5| Oryza sativa (japonica cultivar-group) genomic D... 40 2.2
10dbj|AP000805.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 2.2
11ref|XM_425070.1| PREDICTED: Gallus gallus similar to one cut dom... 38 8.7
12gb|AY365233.1| Human poliovirus 2 isolate A107IND2000 polyprotei... 38 8.7
13gb|BC051257.1| Mus musculus transporter 2, ATP-binding cassette,... 38 8.7
14gb|AE006204.1| Pasteurella multocida subsp. multocida str. Pm70 ... 38 8.7
15ref|NM_011530.2| Mus musculus transporter 2, ATP-binding cassett... 38 8.7
16gb|DQ481665.1| Takifugu rubripes HoxBa gene cluster, complete se... 38 8.7
17gb|AC166178.10| Mus musculus 6 BAC RP24-414G20 (Roswell Park Can... 38 8.7
18emb|CT010387.1| Mus musculus full open reading frame cDNA clone ... 38 8.7
19gb|AC146757.19| Medicago truncatula clone mth2-16n21, complete s... 38 8.7
20gb|AC144403.2| Felis catus clone RP86-60G24, complete sequence 38 8.7
21gb|BC005578.1| Mus musculus transporter 2, ATP-binding cassette,... 38 8.7
22emb|BX537340.15| Zebrafish DNA sequence from clone DKEYP-93A2 in... 38 8.7
23dbj|AK138890.1| Mus musculus 0 day neonate thymus cDNA, RIKEN fu... 38 8.7
24dbj|AK151657.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 38 8.7
25dbj|AK159200.1| Mus musculus osteoclast-like cell cDNA, RIKEN fu... 38 8.7
26dbj|AK151483.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 38 8.7
27dbj|AK151376.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 38 8.7
28dbj|AK161091.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 38 8.7
29dbj|AK153287.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 38 8.7
30dbj|AK020022.1| Mus musculus adult male thymus cDNA, RIKEN full-... 38 8.7
31dbj|AK079667.1| Mus musculus adult male spinal cord cDNA, RIKEN ... 38 8.7
32gb|AC092176.4| Homo sapiens BAC clone RP13-547G9 from 2, complet... 38 8.7
33gb|BC091945.1| Danio rerio cDNA clone IMAGE:7148721 38 8.7
34gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 38 8.7
35emb|AM233362.1| Francisella tularensis subsp. holarctica strain ... 38 8.7
36emb|AJ749949.1| Francisella tularensis subsp. tularensis SCHU S4... 38 8.7
37emb|CR974422.14| Mouse DNA sequence from clone RP23-123G8 on chr... 38 8.7
38gb|BC057668.1| Mus musculus cDNA clone IMAGE:4489104, containing... 38 8.7
39gb|AC136640.2| Mus musculus BAC clone RP23-2E24 from 12, complet... 38 8.7
40gb|AF027865.1|MMMMH461 Mus musculus Major Histocompatibility Loc... 38 8.7
41gb|U60092.1|MCU60092 Mus musculus castaneus TAP2 (TAP2-sw) mRNA,... 38 8.7
42gb|M90459.1|MUSMHHAM2A Mouse MHC HAM2 (required for antigenic pe... 38 8.7 
>emb|AJ006296.1|HVU6296 Hordeum vulgare partial mRNA for chlorophyll a/b-binding protein
          Length = 470

 Score =  325 bits (164), Expect = 3e-86
 Identities = 173/176 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagtcaccattggttcatattttacaaatcaccaagtcccagcagctctcctatgtgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tgagtcaccattggttcatattttacaaatcaccaagtcccagcagctctcctatgtgat 377

                                                                       
Query: 61  cggaccatctttataatcaacaaaggatctttgcgataccctttcatccatcactcgtca 120
           ||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 376 cggaccagcattataatcaacaaaggatctttgcgataccctctcatccatcactcgtca 317

                                                                   
Query: 121 tacaaaaccaaagcacgttcgttacacggacgcgcgttcgtccattttgcagctga 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tacaaaaccaaagcacgttcgttacacggacgcgcgttcgtccattttgcagctga 261
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>emb|Z50801.1|ZMCABCP29 Z.mays mRNA for chlorophyll a/b-binding protein CP29
          Length = 1162

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 11   ttggttcatattttacaaatcaccaagtcccagc 44
            |||| |||||| ||||||| ||||||||||||||
Sbjct: 1104 ttggatcatatattacaaaccaccaagtcccagc 1071
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>gb|AY103995.1| Zea mays PCO102677 mRNA sequence
          Length = 1225

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 11   ttggttcatattttacaaatcaccaagtcccagc 44
            |||| |||||| ||||||| ||||||||||||||
Sbjct: 1153 ttggatcatatattacaaaccaccaagtcccagc 1120
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>gb|AC003680.3| Arabidopsis thaliana chromosome 2 BAC F17K2 genomic sequence, complete
             sequence
          Length = 91854

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 9     cattggttcatattttacaaa 29
             |||||||||||||||||||||
Sbjct: 52509 cattggttcatattttacaaa 52489
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>ref|XM_477163.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 267

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                       
Query: 138 ttcgttacacggacgcgcgttcgtccat 165
           ||||||||||||||| ||||||||||||
Sbjct: 27  ttcgttacacggacg-gcgttcgtccat 1
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>emb|BX842653.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 8/11
          Length = 347636

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    aaaccaaagcacgttcgtta 144
              ||||||||||||||||||||
Sbjct: 227818 aaaccaaagcacgttcgtta 227837
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>gb|AC026101.24| Homo sapiens 3 BAC RP11-441D23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 164728

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     ttcatattttacaaatcacc 34
              ||||||||||||||||||||
Sbjct: 147265 ttcatattttacaaatcacc 147246
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                           
Query: 138     ttcgttacacggacgcgcgttcgtccat 165
               ||||||||||||||| ||||||||||||
Sbjct: 7208546 ttcgttacacggacg-gcgttcgtccat 7208572
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>dbj|AP005764.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0016A21
          Length = 144076

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 138   ttcgttacacggacgcgcgttcgtccat 165
             ||||||||||||||| ||||||||||||
Sbjct: 49030 ttcgttacacggacg-gcgttcgtccat 49056
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>dbj|AP000805.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-698L23, complete
             sequence
          Length = 180996

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    caccaagtcccagcagctct 50
             ||||||||||||||||||||
Sbjct: 38344 caccaagtcccagcagctct 38325
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>ref|XM_425070.1| PREDICTED: Gallus gallus similar to one cut domain, family member 1;
            Hepatocyte nuclear factor 6 (LOC427498), mRNA
          Length = 1950

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                       
Query: 23   ttacaaatcaccaagtcccagcagctc 49
            |||||||||||||  ||||||||||||
Sbjct: 1795 ttacaaatcaccatttcccagcagctc 1821
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>gb|AY365233.1| Human poliovirus 2 isolate A107IND2000 polyprotein gene, partial
           cds
          Length = 293

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 64  accatctttataatcaaca 82
           |||||||||||||||||||
Sbjct: 135 accatctttataatcaaca 117
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>gb|BC051257.1| Mus musculus transporter 2, ATP-binding cassette, sub-family B
           (MDR/TAP), mRNA (cDNA clone MGC:58908 IMAGE:6530488),
           complete cds
          Length = 2425

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 34  caagtcccagcagctctcc 52
           |||||||||||||||||||
Sbjct: 250 caagtcccagcagctctcc 232
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>gb|AE006204.1| Pasteurella multocida subsp. multocida str. Pm70 section 171 of 204
            of the complete genome
          Length = 13594

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 56   gtgatcggaccatctttat 74
            |||||||||||||||||||
Sbjct: 5796 gtgatcggaccatctttat 5778
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>ref|NM_011530.2| Mus musculus transporter 2, ATP-binding cassette, sub-family B
           (MDR/TAP) (Tap2), mRNA
          Length = 2425

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 34  caagtcccagcagctctcc 52
           |||||||||||||||||||
Sbjct: 250 caagtcccagcagctctcc 232
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>gb|DQ481665.1| Takifugu rubripes HoxBa gene cluster, complete sequence
          Length = 294716

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 54     atgtgatcggaccatcttt 72
              |||||||||||||||||||
Sbjct: 285482 atgtgatcggaccatcttt 285500
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>gb|AC166178.10| Mus musculus 6 BAC RP24-414G20 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 173015

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 98    accctttcatccatcactc 116
             |||||||||||||||||||
Sbjct: 64954 accctttcatccatcactc 64936
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>emb|CT010387.1| Mus musculus full open reading frame cDNA clone RZPDo836E0653D for
           gene Tap2, Transporter 2, ATP-binding cassette,
           sub-family B (MDR/TAP); complete cds, incl. stopcodon
          Length = 2109

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 34  caagtcccagcagctctcc 52
           |||||||||||||||||||
Sbjct: 184 caagtcccagcagctctcc 166
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>gb|AC146757.19| Medicago truncatula clone mth2-16n21, complete sequence
          Length = 135915

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 66    catctttataatcaacaaa 84
             |||||||||||||||||||
Sbjct: 15195 catctttataatcaacaaa 15177
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>gb|AC144403.2| Felis catus clone RP86-60G24, complete sequence
          Length = 147664

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 69    ctttataatcaacaaagga 87
             |||||||||||||||||||
Sbjct: 51457 ctttataatcaacaaagga 51439
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>gb|BC005578.1| Mus musculus transporter 2, ATP-binding cassette, sub-family B
           (MDR/TAP), mRNA (cDNA clone MGC:11732 IMAGE:3968225),
           complete cds
          Length = 2408

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 34  caagtcccagcagctctcc 52
           |||||||||||||||||||
Sbjct: 237 caagtcccagcagctctcc 219
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>emb|BX537340.15| Zebrafish DNA sequence from clone DKEYP-93A2 in linkage group 7, complete
              sequence
          Length = 192070

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 8      ccattggttcatattttac 26
              |||||||||||||||||||
Sbjct: 168272 ccattggttcatattttac 168254
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>dbj|AK138890.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A430106J10 product:hypothetical
            DNA-binding RFX/Leucine-rich region profile/Winged helix
            DNA-binding containing protein, full insert sequence
          Length = 3240

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 34   caagtcccagcagctctcc 52
            |||||||||||||||||||
Sbjct: 1291 caagtcccagcagctctcc 1273
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>dbj|AK151657.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830032M09 product:transporter
           2, ATP-binding cassette, sub-family B (MDR/TAP), full
           insert sequence
          Length = 2413

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 34  caagtcccagcagctctcc 52
           |||||||||||||||||||
Sbjct: 270 caagtcccagcagctctcc 252
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>dbj|AK159200.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
           library, clone:I420008H08 product:transporter 2,
           ATP-binding cassette, sub-family B (MDR/TAP), full
           insert sequence
          Length = 2454

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 34  caagtcccagcagctctcc 52
           |||||||||||||||||||
Sbjct: 303 caagtcccagcagctctcc 285
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>dbj|AK151483.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830030M24 product:transporter
           2, ATP-binding cassette, sub-family B (MDR/TAP), full
           insert sequence
          Length = 2398

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 34  caagtcccagcagctctcc 52
           |||||||||||||||||||
Sbjct: 250 caagtcccagcagctctcc 232
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>dbj|AK151376.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830028M01 product:transporter
           2, ATP-binding cassette, sub-family B (MDR/TAP), full
           insert sequence
          Length = 2398

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 34  caagtcccagcagctctcc 52
           |||||||||||||||||||
Sbjct: 250 caagtcccagcagctctcc 232
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>dbj|AK161091.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
           library, clone:4732416E04 product:transporter 2,
           ATP-binding cassette, sub-family B (MDR/TAP), full
           insert sequence
          Length = 2404

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 34  caagtcccagcagctctcc 52
           |||||||||||||||||||
Sbjct: 251 caagtcccagcagctctcc 233
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>dbj|AK153287.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830135B21 product:transporter
           2, ATP-binding cassette, sub-family B (MDR/TAP), full
           insert sequence
          Length = 2398

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 34  caagtcccagcagctctcc 52
           |||||||||||||||||||
Sbjct: 250 caagtcccagcagctctcc 232
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>dbj|AK020022.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
           library, clone:5830434J04 product:ATP-binding cassette,
           sub-family B (MDR/TAP), member 3, full insert sequence
          Length = 2564

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 34  caagtcccagcagctctcc 52
           |||||||||||||||||||
Sbjct: 250 caagtcccagcagctctcc 232
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>dbj|AK079667.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length
           enriched library, clone:A330105B10 product:ATP-binding
           cassette, sub-family B (MDR/TAP), member 3, full insert
           sequence
          Length = 2402

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 34  caagtcccagcagctctcc 52
           |||||||||||||||||||
Sbjct: 250 caagtcccagcagctctcc 232
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>gb|AC092176.4| Homo sapiens BAC clone RP13-547G9 from 2, complete sequence
          Length = 17301

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 117  gtcatacaaaaccaaagca 135
            |||||||||||||||||||
Sbjct: 5041 gtcatacaaaaccaaagca 5059
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>gb|BC091945.1| Danio rerio cDNA clone IMAGE:7148721
          Length = 1590

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 8    ccattggttcatattttac 26
            |||||||||||||||||||
Sbjct: 1094 ccattggttcatattttac 1076
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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 64      accatctttataatcaaca 82
               |||||||||||||||||||
Sbjct: 2732884 accatctttataatcaaca 2732902
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>emb|AM233362.1| Francisella tularensis subsp. holarctica strain LVS complete genome
          Length = 1895994

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 64     accatctttataatcaaca 82
              |||||||||||||||||||
Sbjct: 367772 accatctttataatcaaca 367754
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>emb|AJ749949.1| Francisella tularensis subsp. tularensis SCHU S4 complete genome
          Length = 1892819

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 64     accatctttataatcaaca 82
              |||||||||||||||||||
Sbjct: 904478 accatctttataatcaaca 904460
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>emb|CR974422.14| Mouse DNA sequence from clone RP23-123G8 on chromosome 17, complete
             sequence
          Length = 189049

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    caagtcccagcagctctcc 52
             |||||||||||||||||||
Sbjct: 72593 caagtcccagcagctctcc 72575
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>gb|BC057668.1| Mus musculus cDNA clone IMAGE:4489104, containing frame-shift
           errors
          Length = 2840

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 34  caagtcccagcagctctcc 52
           |||||||||||||||||||
Sbjct: 623 caagtcccagcagctctcc 605
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>gb|AC136640.2| Mus musculus BAC clone RP23-2E24 from 12, complete sequence
          Length = 199358

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 11    ttggttcatattttacaaatcac 33
             ||||||||||||||| |||||||
Sbjct: 56235 ttggttcatattttaaaaatcac 56213
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>gb|AF027865.1|MMMMH461 Mus musculus Major Histocompatibility Locus class II region
          Length = 138187

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    caagtcccagcagctctcc 52
             |||||||||||||||||||
Sbjct: 40333 caagtcccagcagctctcc 40315
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>gb|U60092.1|MCU60092 Mus musculus castaneus TAP2 (TAP2-sw) mRNA, complete cds
          Length = 2109

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 34  caagtcccagcagctctcc 52
           |||||||||||||||||||
Sbjct: 184 caagtcccagcagctctcc 166
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>gb|M90459.1|MUSMHHAM2A Mouse MHC HAM2 (required for antigenic peptide loading onto class I
           MHC molecules) mRNA, complete cds
          Length = 2109

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 34  caagtcccagcagctctcc 52
           |||||||||||||||||||
Sbjct: 184 caagtcccagcagctctcc 166


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,659,293
Number of Sequences: 3902068
Number of extensions: 1659293
Number of successful extensions: 111501
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 111317
Number of HSP's gapped (non-prelim): 187
length of query: 178
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 156
effective length of database: 17,147,199,772
effective search space: 2674963164432
effective search space used: 2674963164432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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