| Clone Name | rbaet27b05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY104341.1| Zea mays PCO142367 mRNA sequence Length = 1295 Score = 127 bits (64), Expect = 3e-26 Identities = 85/92 (92%) Strand = Plus / Minus Query: 256 aggagggagagagcctcggtgatgctgagctcgagccggaacttgggcccgtcgtagtgg 315 ||||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||| Sbjct: 876 aggagggcgagggcctcggtgacggagagctcgagccggaacttgggcccgtcgtagtgg 817 Query: 316 tgcaggatagggcggaatgcgtcctcctccag 347 |||||||| |||||||| |||||||||||||| Sbjct: 816 tgcaggatggggcggaaggcgtcctcctccag 785
>dbj|AK061870.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-A03, full insert sequence Length = 1418 Score = 119 bits (60), Expect = 6e-24 Identities = 102/116 (87%) Strand = Plus / Minus Query: 232 tcatccttgtcttcaaatatatcaaggagggagagagcctcggtgatgctgagctcgagc 291 |||||||||||| |||| || ||||| |||||||| ||||||| || ||||||||| ||| Sbjct: 1047 tcatccttgtctgcaaagatgtcaagaagggagagcgcctcggcgacgctgagctccagc 988 Query: 292 cggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctcctccag 347 | ||||||||| |||||||||||||| ||||| || ||||| |||||||||||||| Sbjct: 987 ctgaacttggggccgtcgtagtggtggaggatcggccggaaggcgtcctcctccag 932
>dbj|AK106151.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-H09, full insert sequence Length = 1489 Score = 119 bits (60), Expect = 6e-24 Identities = 102/116 (87%) Strand = Plus / Minus Query: 232 tcatccttgtcttcaaatatatcaaggagggagagagcctcggtgatgctgagctcgagc 291 |||||||||||| |||| || ||||| |||||||| ||||||| || ||||||||| ||| Sbjct: 1119 tcatccttgtctgcaaagatgtcaagaagggagagcgcctcggcgacgctgagctccagc 1060 Query: 292 cggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctcctccag 347 | ||||||||| |||||||||||||| ||||| || ||||| |||||||||||||| Sbjct: 1059 ctgaacttggggccgtcgtagtggtggaggatcggccggaaggcgtcctcctccag 1004
>dbj|AK067529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108E24, full insert sequence Length = 1622 Score = 119 bits (60), Expect = 6e-24 Identities = 102/116 (87%) Strand = Plus / Minus Query: 232 tcatccttgtcttcaaatatatcaaggagggagagagcctcggtgatgctgagctcgagc 291 |||||||||||| |||| || ||||| |||||||| ||||||| || ||||||||| ||| Sbjct: 1120 tcatccttgtctgcaaagatgtcaagaagggagagcgcctcggcgacgctgagctccagc 1061 Query: 292 cggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctcctccag 347 | ||||||||| |||||||||||||| ||||| || ||||| |||||||||||||| Sbjct: 1060 ctgaacttggggccgtcgtagtggtggaggatcggccggaaggcgtcctcctccag 1005
>gb|DQ427343.1| Sorghum propinquum locus CDSC56 genomic sequence Length = 658 Score = 107 bits (54), Expect = 2e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 282 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 341 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 650 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 591 Query: 342 ctccag 347 |||||| Sbjct: 590 ctccag 585
>gb|DQ427342.1| Sorghum bicolor voucher PI585454 locus CDSC56 genomic sequence Length = 668 Score = 107 bits (54), Expect = 2e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 282 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 341 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 660 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 601 Query: 342 ctccag 347 |||||| Sbjct: 600 ctccag 595
>gb|DQ427341.1| Sorghum bicolor voucher PI267539 locus CDSC56 genomic sequence Length = 668 Score = 107 bits (54), Expect = 2e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 282 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 341 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 660 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 601 Query: 342 ctccag 347 |||||| Sbjct: 600 ctccag 595
>gb|DQ427340.1| Sorghum bicolor voucher PI267408 locus CDSC56 genomic sequence Length = 668 Score = 107 bits (54), Expect = 2e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 282 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 341 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 660 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 601 Query: 342 ctccag 347 |||||| Sbjct: 600 ctccag 595
>gb|DQ427339.1| Sorghum bicolor voucher PI221607 locus CDSC56 genomic sequence Length = 668 Score = 107 bits (54), Expect = 2e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 282 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 341 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 660 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 601 Query: 342 ctccag 347 |||||| Sbjct: 600 ctccag 595
>gb|DQ427338.1| Sorghum bicolor voucher PI152702 locus CDSC56 genomic sequence Length = 658 Score = 107 bits (54), Expect = 2e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 282 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 341 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 650 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 591 Query: 342 ctccag 347 |||||| Sbjct: 590 ctccag 585
>gb|DQ427337.1| Sorghum bicolor voucher NSL92371 locus CDSC56 genomic sequence Length = 668 Score = 107 bits (54), Expect = 2e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 282 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 341 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 660 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 601 Query: 342 ctccag 347 |||||| Sbjct: 600 ctccag 595
>gb|DQ427336.1| Sorghum bicolor voucher NSL87902 locus CDSC56 genomic sequence Length = 651 Score = 107 bits (54), Expect = 2e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 282 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 341 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 643 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 584 Query: 342 ctccag 347 |||||| Sbjct: 583 ctccag 578
>gb|DQ427335.1| Sorghum bicolor voucher NSL77217 locus CDSC56 genomic sequence Length = 875 Score = 107 bits (54), Expect = 2e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 282 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 341 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 867 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 808 Query: 342 ctccag 347 |||||| Sbjct: 807 ctccag 802
>gb|DQ427334.1| Sorghum bicolor voucher NSL77034 locus CDSC56 genomic sequence Length = 658 Score = 107 bits (54), Expect = 2e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 282 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 341 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 650 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 591 Query: 342 ctccag 347 |||||| Sbjct: 590 ctccag 585
>gb|DQ427333.1| Sorghum bicolor voucher NSL56174 locus CDSC56 genomic sequence Length = 658 Score = 107 bits (54), Expect = 2e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 282 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 341 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 650 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 591 Query: 342 ctccag 347 |||||| Sbjct: 590 ctccag 585
>gb|DQ427332.1| Sorghum bicolor voucher NSL56003 locus CDSC56 genomic sequence Length = 658 Score = 107 bits (54), Expect = 2e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 282 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 341 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 650 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 591 Query: 342 ctccag 347 |||||| Sbjct: 590 ctccag 585
>gb|DQ427331.1| Sorghum bicolor voucher NSL55243 locus CDSC56 genomic sequence Length = 879 Score = 107 bits (54), Expect = 2e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 282 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 341 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 871 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 812 Query: 342 ctccag 347 |||||| Sbjct: 811 ctccag 806
>gb|DQ427330.1| Sorghum bicolor voucher NSL51365 locus CDSC56 genomic sequence Length = 658 Score = 107 bits (54), Expect = 2e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 282 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 341 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 650 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 591 Query: 342 ctccag 347 |||||| Sbjct: 590 ctccag 585
>gb|DQ427329.1| Sorghum bicolor voucher NSL51030 locus CDSC56 genomic sequence Length = 668 Score = 107 bits (54), Expect = 2e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 282 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 341 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 660 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 601 Query: 342 ctccag 347 |||||| Sbjct: 600 ctccag 595
>gb|DQ427328.1| Sorghum bicolor voucher NSL50875 locus CDSC56 genomic sequence Length = 668 Score = 107 bits (54), Expect = 2e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 282 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 341 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 660 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 601 Query: 342 ctccag 347 |||||| Sbjct: 600 ctccag 595
>gb|DQ427327.1| Sorghum bicolor voucher BTx623 locus CDSC56 genomic sequence Length = 658 Score = 107 bits (54), Expect = 2e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 282 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 341 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 650 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 591 Query: 342 ctccag 347 |||||| Sbjct: 590 ctccag 585
>gb|AY109212.1| Zea mays PCO142361 mRNA sequence Length = 562 Score = 99.6 bits (50), Expect = 6e-18 Identities = 62/66 (93%) Strand = Plus / Minus Query: 282 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 341 |||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 260 gagctcgagccgaaacttgggcccgtcgtagtggtgaaggatggggcggaaggcgtcctc 201 Query: 342 ctccag 347 |||||| Sbjct: 200 ctccag 195
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 85.7 bits (43), Expect = 9e-14 Identities = 70/79 (88%) Strand = Plus / Plus Query: 269 cctcggtgatgctgagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggc 328 |||||| || ||||||||| |||| ||||||||| |||||||||||||| ||||| || | Sbjct: 20596110 cctcggcgacgctgagctccagcctgaacttggggccgtcgtagtggtggaggatcggcc 20596169 Query: 329 ggaatgcgtcctcctccag 347 |||| |||||||||||||| Sbjct: 20596170 ggaaggcgtcctcctccag 20596188 Score = 40.1 bits (20), Expect = 4.6 Identities = 35/40 (87%) Strand = Plus / Plus Query: 232 tcatccttgtcttcaaatatatcaaggagggagagagcct 271 |||||||||||| |||| || ||||| |||||||| |||| Sbjct: 20595926 tcatccttgtctgcaaagatgtcaagaagggagagcgcct 20595965
>dbj|AP004258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0024F24 Length = 172642 Score = 85.7 bits (43), Expect = 9e-14 Identities = 70/79 (88%) Strand = Plus / Plus Query: 269 cctcggtgatgctgagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggc 328 |||||| || ||||||||| |||| ||||||||| |||||||||||||| ||||| || | Sbjct: 58086 cctcggcgacgctgagctccagcctgaacttggggccgtcgtagtggtggaggatcggcc 58145 Query: 329 ggaatgcgtcctcctccag 347 |||| |||||||||||||| Sbjct: 58146 ggaaggcgtcctcctccag 58164 Score = 40.1 bits (20), Expect = 4.6 Identities = 35/40 (87%) Strand = Plus / Plus Query: 232 tcatccttgtcttcaaatatatcaaggagggagagagcct 271 |||||||||||| |||| || ||||| |||||||| |||| Sbjct: 57902 tcatccttgtctgcaaagatgtcaagaagggagagcgcct 57941
>dbj|AP004225.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1156H12 Length = 159509 Score = 85.7 bits (43), Expect = 9e-14 Identities = 70/79 (88%) Strand = Plus / Plus Query: 269 cctcggtgatgctgagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggc 328 |||||| || ||||||||| |||| ||||||||| |||||||||||||| ||||| || | Sbjct: 119932 cctcggcgacgctgagctccagcctgaacttggggccgtcgtagtggtggaggatcggcc 119991 Query: 329 ggaatgcgtcctcctccag 347 |||| |||||||||||||| Sbjct: 119992 ggaaggcgtcctcctccag 120010 Score = 40.1 bits (20), Expect = 4.6 Identities = 35/40 (87%) Strand = Plus / Plus Query: 232 tcatccttgtcttcaaatatatcaaggagggagagagcct 271 |||||||||||| |||| || ||||| |||||||| |||| Sbjct: 119748 tcatccttgtctgcaaagatgtcaagaagggagagcgcct 119787
>ref|NM_193396.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1098 Score = 83.8 bits (42), Expect = 3e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 270 ctcggtgatgctgagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcg 329 ||||| || ||||||||| |||| ||||||||| |||||||||||||| ||||| || || Sbjct: 1014 ctcggcgacgctgagctccagcctgaacttggggccgtcgtagtggtggaggatcggccg 955 Query: 330 gaatgcgtcctcctccag 347 ||| |||||||||||||| Sbjct: 954 gaaggcgtcctcctccag 937
>gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0030I14, complete sequence Length = 159035 Score = 77.8 bits (39), Expect = 2e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 253 tcaaggagggagagagcctcggtgatgctgagctcgagccggaacttgggcccgtcgtag 312 ||||| ||||| || ||||||| || | |||||||||| ||||||||||| ||||||||| Sbjct: 12804 tcaagaagggatagggcctcggcgacggtgagctcgaggcggaacttggggccgtcgtag 12863 Query: 313 tggtgcaggatagggcggaatgcgtcctcctccag 347 |||||||| | || | ||| |||||||||||||| Sbjct: 12864 tggtgcagcacgggcctgaaggcgtcctcctccag 12898
>gb|AC130727.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560F03, complete sequence Length = 45160 Score = 77.8 bits (39), Expect = 2e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 253 tcaaggagggagagagcctcggtgatgctgagctcgagccggaacttgggcccgtcgtag 312 ||||| ||||| || ||||||| || | |||||||||| ||||||||||| ||||||||| Sbjct: 28486 tcaagaagggatagggcctcggcgacggtgagctcgaggcggaacttggggccgtcgtag 28427 Query: 313 tggtgcaggatagggcggaatgcgtcctcctccag 347 |||||||| | || | ||| |||||||||||||| Sbjct: 28426 tggtgcagcacgggcctgaaggcgtcctcctccag 28392
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 77.8 bits (39), Expect = 2e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 253 tcaaggagggagagagcctcggtgatgctgagctcgagccggaacttgggcccgtcgtag 312 ||||| ||||| || ||||||| || | |||||||||| ||||||||||| ||||||||| Sbjct: 29364779 tcaagaagggatagggcctcggcgacggtgagctcgaggcggaacttggggccgtcgtag 29364838 Query: 313 tggtgcaggatagggcggaatgcgtcctcctccag 347 |||||||| | || | ||| |||||||||||||| Sbjct: 29364839 tggtgcagcacgggcctgaaggcgtcctcctccag 29364873
>dbj|AK106130.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F10, full insert sequence Length = 1306 Score = 77.8 bits (39), Expect = 2e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 253 tcaaggagggagagagcctcggtgatgctgagctcgagccggaacttgggcccgtcgtag 312 ||||| ||||| || ||||||| || | |||||||||| ||||||||||| ||||||||| Sbjct: 1038 tcaagaagggatagggcctcggcgacggtgagctcgaggcggaacttggggccgtcgtag 979 Query: 313 tggtgcaggatagggcggaatgcgtcctcctccag 347 |||||||| | || | ||| |||||||||||||| Sbjct: 978 tggtgcagcacgggcctgaaggcgtcctcctccag 944
>dbj|AK060122.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-G03, full insert sequence Length = 1187 Score = 77.8 bits (39), Expect = 2e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 253 tcaaggagggagagagcctcggtgatgctgagctcgagccggaacttgggcccgtcgtag 312 ||||| ||||| || ||||||| || | |||||||||| ||||||||||| ||||||||| Sbjct: 918 tcaagaagggatagggcctcggcgacggtgagctcgaggcggaacttggggccgtcgtag 859 Query: 313 tggtgcaggatagggcggaatgcgtcctcctccag 347 |||||||| | || | ||| |||||||||||||| Sbjct: 858 tggtgcagcacgggcctgaaggcgtcctcctccag 824
>gb|AC113106.9| Mus musculus chromosome 9, clone RP23-325C1, complete sequence Length = 191609 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Minus Query: 134 taaatcgtatgtatgtatgtatact 158 ||||||||||||||||||||||||| Sbjct: 49985 taaatcgtatgtatgtatgtatact 49961
>gb|AC113127.6| Mus musculus chromosome 9, clone RP23-352H13, complete sequence Length = 185801 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Plus Query: 134 taaatcgtatgtatgtatgtatact 158 ||||||||||||||||||||||||| Sbjct: 24053 taaatcgtatgtatgtatgtatact 24077
>ref|NM_123570.2| Arabidopsis thaliana unknown protein AT5G42050 mRNA, complete cds Length = 1552 Score = 48.1 bits (24), Expect = 0.019 Identities = 36/40 (90%) Strand = Plus / Minus Query: 280 ctgagctcgagccggaacttgggcccgtcgtagtggtgca 319 ||||| ||||| |||||||| || |||||||||||||||| Sbjct: 1139 ctgagttcgagtcggaacttaggaccgtcgtagtggtgca 1100
>gb|AY114057.1| Arabidopsis thaliana unknown protein (At5g42050) mRNA, complete cds Length = 1081 Score = 48.1 bits (24), Expect = 0.019 Identities = 36/40 (90%) Strand = Plus / Minus Query: 280 ctgagctcgagccggaacttgggcccgtcgtagtggtgca 319 ||||| ||||| |||||||| || |||||||||||||||| Sbjct: 998 ctgagttcgagtcggaacttaggaccgtcgtagtggtgca 959
>gb|AY080773.1| Arabidopsis thaliana unknown protein (At5g42050) mRNA, complete cds Length = 1497 Score = 48.1 bits (24), Expect = 0.019 Identities = 36/40 (90%) Strand = Plus / Minus Query: 280 ctgagctcgagccggaacttgggcccgtcgtagtggtgca 319 ||||| ||||| |||||||| || |||||||||||||||| Sbjct: 1108 ctgagttcgagtcggaacttaggaccgtcgtagtggtgca 1069
>gb|AY088465.1| Arabidopsis thaliana clone 6903 mRNA, complete sequence Length = 1513 Score = 48.1 bits (24), Expect = 0.019 Identities = 36/40 (90%) Strand = Plus / Minus Query: 280 ctgagctcgagccggaacttgggcccgtcgtagtggtgca 319 ||||| ||||| |||||||| || |||||||||||||||| Sbjct: 1140 ctgagttcgagtcggaacttaggaccgtcgtagtggtgca 1101
>dbj|AB017067.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJC20 Length = 83689 Score = 48.1 bits (24), Expect = 0.019 Identities = 36/40 (90%) Strand = Plus / Minus Query: 280 ctgagctcgagccggaacttgggcccgtcgtagtggtgca 319 ||||| ||||| |||||||| || |||||||||||||||| Sbjct: 39029 ctgagttcgagtcggaacttaggaccgtcgtagtggtgca 38990
>emb|X72385.1|DCB2P D.carota mRNA for B2 protein Length = 935 Score = 48.1 bits (24), Expect = 0.019 Identities = 48/56 (85%) Strand = Plus / Minus Query: 262 gagagagcctcggtgatgctgagctcgagccggaacttgggcccgtcgtagtggtg 317 |||| |||||||| |||| ||||||| || |||||||| || || ||||||||||| Sbjct: 613 gagatagcctcggggatgttgagctccaggcggaacttaggaccatcgtagtggtg 558
>emb|BX323574.12| Zebrafish DNA sequence from clone DKEY-180F8, complete sequence Length = 171724 Score = 46.1 bits (23), Expect = 0.075 Identities = 23/23 (100%) Strand = Plus / Minus Query: 133 ataaatcgtatgtatgtatgtat 155 ||||||||||||||||||||||| Sbjct: 1250 ataaatcgtatgtatgtatgtat 1228
>gb|AF421468.1| Canis familiaris clone INU032 genomic sequence Length = 557 Score = 46.1 bits (23), Expect = 0.075 Identities = 23/23 (100%) Strand = Plus / Minus Query: 77 atgagatggaaaacccaataaag 99 ||||||||||||||||||||||| Sbjct: 149 atgagatggaaaacccaataaag 127
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.075 Identities = 23/23 (100%) Strand = Plus / Minus Query: 140 gtatgtatgtatgtatactccag 162 ||||||||||||||||||||||| Sbjct: 457912 gtatgtatgtatgtatactccag 457890 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 atcaccattaattgataatg 130 |||||||||||||||||||| Sbjct: 19904579 atcaccattaattgataatg 19904560
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.075 Identities = 23/23 (100%) Strand = Plus / Minus Query: 140 gtatgtatgtatgtatactccag 162 ||||||||||||||||||||||| Sbjct: 457912 gtatgtatgtatgtatactccag 457890 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 atcaccattaattgataatg 130 |||||||||||||||||||| Sbjct: 19830793 atcaccattaattgataatg 19830774
>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141089 Score = 46.1 bits (23), Expect = 0.075 Identities = 23/23 (100%) Strand = Plus / Plus Query: 140 gtatgtatgtatgtatactccag 162 ||||||||||||||||||||||| Sbjct: 88860 gtatgtatgtatgtatactccag 88882
>emb|CR933529.9| Zebrafish DNA sequence from clone DKEY-206N17 in linkage group 8, complete sequence Length = 59760 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 134 taaatcgtatgtatgtatgtat 155 |||||||||||||||||||||| Sbjct: 5907 taaatcgtatgtatgtatgtat 5928
>gb|AC084855.4| Homo sapiens chromosome 15, clone CTD-3076O17, complete sequence Length = 180944 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 219 ccttcatcatgcatcatccttg 240 |||||||||||||||||||||| Sbjct: 110686 ccttcatcatgcatcatccttg 110707
>dbj|AK057529.1| Homo sapiens cDNA FLJ32967 fis, clone TESTI2008715 Length = 1857 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 219 ccttcatcatgcatcatccttg 240 |||||||||||||||||||||| Sbjct: 126 ccttcatcatgcatcatccttg 105
>dbj|AK057331.1| Homo sapiens cDNA FLJ32769 fis, clone TESTI2001894 Length = 1737 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 219 ccttcatcatgcatcatccttg 240 |||||||||||||||||||||| Sbjct: 1521 ccttcatcatgcatcatccttg 1500
>emb|BX294375.7| Zebrafish DNA sequence from clone DKEY-176M20 in linkage group 17, complete sequence Length = 188455 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 131 atataaatcgtatgtatgtatgtata 156 |||||||| ||||||||||||||||| Sbjct: 14700 atataaattgtatgtatgtatgtata 14675
>gb|AC015720.20| Homo sapiens chromosome 15, clone RP11-151H2, complete sequence Length = 174559 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 255 aaggagggagagagcctcggtg 276 |||||||||||||||||||||| Sbjct: 66305 aaggagggagagagcctcggtg 66284
>ref|NM_116890.1| Arabidopsis thaliana unknown protein AT4G08210 mRNA, complete cds Length = 2061 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 gatggaaaacccaataaagct 101 ||||||||||||||||||||| Sbjct: 250 gatggaaaacccaataaagct 270
>gb|AC125101.3| Mus musculus BAC clone RP24-207F9 from chromosome 19, complete sequence Length = 162162 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 aaatcgtatgtatgtatgtat 155 ||||||||||||||||||||| Sbjct: 10807 aaatcgtatgtatgtatgtat 10827
>gb|AC125133.2| Mus musculus BAC clone RP24-316A22 from chromosome 18, complete sequence Length = 175583 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 131 atataaatcgtatgtatgtatgtat 155 |||||||| |||||||||||||||| Sbjct: 121036 atataaattgtatgtatgtatgtat 121012
>gb|AC124693.4| Mus musculus BAC clone RP24-167O14 from chromosome 19, complete sequence Length = 160363 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 aaatcgtatgtatgtatgtat 155 ||||||||||||||||||||| Sbjct: 149569 aaatcgtatgtatgtatgtat 149589
>gb|AC100491.9| Mus musculus chromosome 9, clone RP23-142M14, complete sequence Length = 222845 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 141 tatgtatgtatgtatactcca 161 ||||||||||||||||||||| Sbjct: 104314 tatgtatgtatgtatactcca 104294
>emb|AL929359.1|PFA929359 Plasmodium falciparum strain 3D7, chromosome 9; segment 5/5 Length = 281723 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 136 aatcgtatgtatgtatgtata 156 ||||||||||||||||||||| Sbjct: 99352 aatcgtatgtatgtatgtata 99332 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tatgtatgtatgtatactcc 160 |||||||||||||||||||| Sbjct: 192564 tatgtatgtatgtatactcc 192545
>emb|AL161510.2|ATCHRIV22 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 22 Length = 198131 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 gatggaaaacccaataaagct 101 ||||||||||||||||||||| Sbjct: 152559 gatggaaaacccaataaagct 152539
>emb|AL080252.2|ATT12G13 Arabidopsis thaliana DNA chromosome 4, BAC clone T12G13, partial sequence (ESSA project) Length = 91226 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 gatggaaaacccaataaagct 101 ||||||||||||||||||||| Sbjct: 23656 gatggaaaacccaataaagct 23636
>emb|BX072572.8| Zebrafish DNA sequence from clone CH211-119A17, complete sequence Length = 173988 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 132 tataaatcgtatgtatgtatgtata 156 |||||| |||||||||||||||||| Sbjct: 62850 tataaaccgtatgtatgtatgtata 62874
>gb|AC010853.11| Homo sapiens chromosome 18, clone RP11-349D12, complete sequence Length = 184396 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 139 cgtatgtatgtatgtatactc 159 ||||||||||||||||||||| Sbjct: 55285 cgtatgtatgtatgtatactc 55265
>gb|AC177797.3| Mus musculus BAC clone RP24-558G11 from chromosome y, complete sequence Length = 174066 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 136 aatcgtatgtatgtatgtata 156 ||||||||||||||||||||| Sbjct: 60464 aatcgtatgtatgtatgtata 60444
>gb|AC067796.11| Homo sapiens chromosome 18, clone RP11-609K12, complete sequence Length = 201861 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 139 cgtatgtatgtatgtatactc 159 ||||||||||||||||||||| Sbjct: 199302 cgtatgtatgtatgtatactc 199282
>dbj|AK156919.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830107I15 product:unclassifiable, full insert sequence Length = 3926 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 141 tatgtatgtatgtatactcca 161 ||||||||||||||||||||| Sbjct: 3539 tatgtatgtatgtatactcca 3519
>emb|AL929507.37| Zebrafish DNA sequence from clone DKEY-7C18 in linkage group 20, complete sequence Length = 214404 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 132 tataaatcgtatgtatgtatgtata 156 |||||| |||||||||||||||||| Sbjct: 191022 tataaaccgtatgtatgtatgtata 190998
>emb|AL831756.8| Mouse DNA sequence from clone RP23-300P20 on chromosome 4, complete sequence Length = 164883 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 cgtatgtatgtatgtatactc 159 ||||||||||||||||||||| Sbjct: 84329 cgtatgtatgtatgtatactc 84349
>ref|XM_635999.1| Dictyostelium discoideum hypothetical protein (DDB0206085), partial mRNA Length = 2658 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 tatcaccattaattgataat 129 |||||||||||||||||||| Sbjct: 694 tatcaccattaattgataat 675
>gb|AC159008.2| Mus musculus BAC clone RP23-14E14 from chromosome 7, complete sequence Length = 239149 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 tatactccagtccatcttat 172 |||||||||||||||||||| Sbjct: 42267 tatactccagtccatcttat 42248
>gb|AC147568.5| Mus musculus chromosome 7 clone RP23-15J23, complete sequence Length = 211115 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 gtatgtatgtatgtatactc 159 |||||||||||||||||||| Sbjct: 189275 gtatgtatgtatgtatactc 189256
>gb|AC102931.10| Mus musculus chromosome 7, clone RP24-221B5, complete sequence Length = 164298 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gtatgtatgtatgtatactc 159 |||||||||||||||||||| Sbjct: 120878 gtatgtatgtatgtatactc 120897
>gb|AC127171.54| Mus musculus strain C57BL/6J clone rp23-202i7 map 10, complete sequence Length = 194193 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 gtatgtatgtatgtatactc 159 |||||||||||||||||||| Sbjct: 53020 gtatgtatgtatgtatactc 53001
>gb|AC102999.7| Rattus norvegicus 7 BAC CH230-33J22 (Children's Hospital Oakland Research Institute) complete sequence Length = 209654 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 aatcgtatgtatgtatgtat 155 |||||||||||||||||||| Sbjct: 142862 aatcgtatgtatgtatgtat 142843
>gb|AC118017.15| Mus musculus chromosome 7, clone RP23-457C1, complete sequence Length = 196427 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 tcgtatgtatgtatgtatac 157 |||||||||||||||||||| Sbjct: 114182 tcgtatgtatgtatgtatac 114201
>gb|AC161289.2| Pan troglodytes BAC clone CH251-170B19 from chromosome 7, complete sequence Length = 151213 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 aatcgtatgtatgtatgtat 155 |||||||||||||||||||| Sbjct: 99612 aatcgtatgtatgtatgtat 99631
>gb|AC183672.2| Pan troglodytes BAC clone CH251-546K4 from chromosome 7, complete sequence Length = 231124 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 aatcgtatgtatgtatgtat 155 |||||||||||||||||||| Sbjct: 40321 aatcgtatgtatgtatgtat 40302
>gb|AC152938.3| Mus musculus BAC clone RP23-469O12 from chromosome 7, complete sequence Length = 183468 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 tatactccagtccatcttat 172 |||||||||||||||||||| Sbjct: 173875 tatactccagtccatcttat 173856
>gb|AC163285.3| Mus musculus BAC clone RP23-379H2 from chromosome 16, complete sequence Length = 184951 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 245 caaatatatcaaggagggagagagcctc 272 |||||| ||| ||||||||||||||||| Sbjct: 82581 caaatagatccaggagggagagagcctc 82608
>gb|AC102125.13| Mus musculus chromosome 6, clone RP23-190E16, complete sequence Length = 219870 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gtatgtatgtatgtatactc 159 |||||||||||||||||||| Sbjct: 187048 gtatgtatgtatgtatactc 187067
>gb|AC087801.69| Mus musculus strain C57BL/6J clone rp23-396i23 map 1, complete sequence Length = 197679 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 gggctcatcttctgcagcca 31 |||||||||||||||||||| Sbjct: 21975 gggctcatcttctgcagcca 21956
>gb|AC124481.2| Mus musculus BAC clone RP24-119I10 from chromosome 1, complete sequence Length = 182261 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 aatcgtatgtatgtatgtat 155 |||||||||||||||||||| Sbjct: 115058 aatcgtatgtatgtatgtat 115039
>gb|AC121989.2| Mus musculus BAC clone RP24-298C8 from 7, complete sequence Length = 175515 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 gtatgtatgtatgtatactc 159 |||||||||||||||||||| Sbjct: 77251 gtatgtatgtatgtatactc 77232
>gb|AC146024.3| Pan troglodytes BAC clone RP43-119C21 from 7, complete sequence Length = 139947 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 aatcgtatgtatgtatgtat 155 |||||||||||||||||||| Sbjct: 43653 aatcgtatgtatgtatgtat 43634
>emb|AL606526.10| Human DNA sequence from clone RP13-534F18 on chromosome 1, complete sequence Length = 113654 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 133 ataaatcgtatgtatgtatgtata 156 ||||||| |||||||||||||||| Sbjct: 49444 ataaatcatatgtatgtatgtata 49421
>emb|AL050342.42|HSDJ655K7 Human DNA sequence from clone RP4-655K7 on chromosome 1p35.3-36.13 Contains part of a gene encoding a novel protein,, complete sequence Length = 116857 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 catcttctgcagccatcacc 36 |||||||||||||||||||| Sbjct: 87309 catcttctgcagccatcacc 87328
>gb|AC158575.3| Mus musculus chromosome 7, clone RP23-275H16, complete sequence Length = 221489 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 gtatgtatgtatgtatactc 159 |||||||||||||||||||| Sbjct: 142814 gtatgtatgtatgtatactc 142795
>gb|AC084026.14| Homo sapiens chromosome 8, clone RP11-486M23, complete sequence Length = 185759 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 catgcatcatccttgtcttc 245 |||||||||||||||||||| Sbjct: 66349 catgcatcatccttgtcttc 66368
>gb|AC183922.3| Pan troglodytes BAC clone CH251-344F10 from chromosome unknown, complete sequence Length = 146184 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 aatcgtatgtatgtatgtat 155 |||||||||||||||||||| Sbjct: 127879 aatcgtatgtatgtatgtat 127860
>emb|CR352288.9| Zebrafish DNA sequence from clone CH211-123P18 in linkage group 16, complete sequence Length = 103979 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gtatgtatgtatgtatactc 159 |||||||||||||||||||| Sbjct: 65673 gtatgtatgtatgtatactc 65692
>gb|AC010941.6| Homo sapiens chromosome 8, clone RP11-115C6, complete sequence Length = 166129 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 agagagcctcggtgatgctgagct 286 ||||||||| |||||||||||||| Sbjct: 127175 agagagcctaggtgatgctgagct 127198
>gb|DQ397629.1| Cenarchaeum symbiosum clone C01B12, complete sequence Length = 34772 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 tcatccttgtcttcaaatat 251 |||||||||||||||||||| Sbjct: 34039 tcatccttgtcttcaaatat 34058
>gb|DQ397558.1| Cenarchaeum symbiosum clone C19H10, complete sequence Length = 43787 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 tcatccttgtcttcaaatat 251 |||||||||||||||||||| Sbjct: 1525 tcatccttgtcttcaaatat 1544
>gb|AC119416.15| Medicago truncatula clone mth2-31m16, complete sequence Length = 120889 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 tatgtatgtatgtatactcc 160 |||||||||||||||||||| Sbjct: 100243 tatgtatgtatgtatactcc 100262
>gb|AC134836.6| Mus musculus BAC clone RP24-323I5 from chromosome 6, complete sequence Length = 150705 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gtatgtatgtatgtatactc 159 |||||||||||||||||||| Sbjct: 12426 gtatgtatgtatgtatactc 12445
>gb|AC148988.5| Mus musculus BAC clone RP23-85B15 from chromosome 7, complete sequence Length = 154177 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 tcgtatgtatgtatgtatac 157 |||||||||||||||||||| Sbjct: 132292 tcgtatgtatgtatgtatac 132273
>dbj|AK049512.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length enriched library, clone:C430018J02 product:unclassifiable, full insert sequence Length = 2357 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tatgtatgtatgtatactcc 160 |||||||||||||||||||| Sbjct: 1004 tatgtatgtatgtatactcc 985
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gtatgtatgtatgtatactc 159 |||||||||||||||||||| Sbjct: 28740794 gtatgtatgtatgtatactc 28740813
>emb|BX833882.1|CNS09Z8S Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL81ZF07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 802 Score = 40.1 bits (20), Expect = 4.6 Identities = 35/40 (87%) Strand = Plus / Minus Query: 280 ctgagctcgagccggaacttgggcccgtcgtagtggtgca 319 ||||| ||||| ||||||| || |||||||||||||||| Sbjct: 430 ctgagttcgagtcggaactgaggaccgtcgtagtggtgca 391
>gb|BC044776.2| Mus musculus, clone IMAGE:5361456, mRNA Length = 2123 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 tcgtatgtatgtatgtatac 157 |||||||||||||||||||| Sbjct: 1766 tcgtatgtatgtatgtatac 1747
>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0459B01 Length = 163087 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gtatgtatgtatgtatactc 159 |||||||||||||||||||| Sbjct: 57367 gtatgtatgtatgtatactc 57386
>emb|AL773561.7| Mouse DNA sequence from clone RP23-71D9 on chromosome X, complete sequence Length = 174072 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tatgtatgtatgtatactcc 160 |||||||||||||||||||| Sbjct: 127453 tatgtatgtatgtatactcc 127434
>gb|AC154427.2| Mus musculus BAC clone RP24-200D20 from 16, complete sequence Length = 163687 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 245 caaatatatcaaggagggagagagcctc 272 |||||| ||| ||||||||||||||||| Sbjct: 969 caaatagatccaggagggagagagcctc 996
>emb|BX248499.12| Zebrafish DNA sequence from clone CH211-284A13 in linkage group 19, complete sequence Length = 148683 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gtatgtatgtatgtatactc 159 |||||||||||||||||||| Sbjct: 66401 gtatgtatgtatgtatactc 66420
>gb|AC116882.9| Mus musculus chromosome 8, clone RP24-435G18, complete sequence Length = 187290 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gtatgtatgtatgtatactc 159 |||||||||||||||||||| Sbjct: 122588 gtatgtatgtatgtatactc 122607
>emb|CT954231.1| Medicago truncatula chromosome 5 clone mth2-166e2, COMPLETE SEQUENCE Length = 122895 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tatgtatgtatgtatactcc 160 |||||||||||||||||||| Sbjct: 22631 tatgtatgtatgtatactcc 22612
>emb|AL928883.19| Mouse DNA sequence from clone RP23-60E18 on chromosome 2, complete sequence Length = 208470 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gtatgtatgtatgtatactc 159 |||||||||||||||||||| Sbjct: 103113 gtatgtatgtatgtatactc 103132
>emb|AL845506.6| Mouse DNA sequence from clone RP23-401M24 on chromosome 2, complete sequence Length = 92280 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 135 aaatcgtatgtatgtatgtatactccag 162 |||| |||||||||||||| |||||||| Sbjct: 73600 aaatggtatgtatgtatgtgtactccag 73627
>gb|L02306.1|RCCMETAL Ricinus communis metallothionein (RCMIT) mRNA, complete cds Length = 571 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 aatcgtatgtatgtatgtat 155 |||||||||||||||||||| Sbjct: 504 aatcgtatgtatgtatgtat 523
>emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118_C12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 165433 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 atcaccattaattgataatg 130 |||||||||||||||||||| Sbjct: 122681 atcaccattaattgataatg 122700
>gb|AC151579.2| Mus musculus BAC clone RP23-191P7 from 1, complete sequence Length = 204175 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tatgtatgtatgtatactcc 160 |||||||||||||||||||| Sbjct: 27293 tatgtatgtatgtatactcc 27274
>dbj|AP006704.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01O03, TM0588c, complete sequence Length = 16978 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 aatcgtatgtatgtatgtat 155 |||||||||||||||||||| Sbjct: 4029 aatcgtatgtatgtatgtat 4048
>gb|AC123793.5| Mus musculus BAC clone RP24-315L18 from chromosome 1, complete sequence Length = 206081 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tatgtatgtatgtatactcc 160 |||||||||||||||||||| Sbjct: 157120 tatgtatgtatgtatactcc 157101
>emb|AL626773.18| Mouse DNA sequence from clone RP23-273M9 on chromosome 4, complete sequence Length = 193852 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 gtatgtatgtatgtatactc 159 |||||||||||||||||||| Sbjct: 162012 gtatgtatgtatgtatactc 161993
>emb|AL844547.9| Mouse DNA sequence from clone RP23-216B20 on chromosome 2, complete sequence Length = 210589 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 aatcgtatgtatgtatgtat 155 |||||||||||||||||||| Sbjct: 177590 aatcgtatgtatgtatgtat 177609 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,928,638 Number of Sequences: 3902068 Number of extensions: 3928638 Number of successful extensions: 304527 Number of sequences better than 10.0: 112 Number of HSP's better than 10.0 without gapping: 114 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 303412 Number of HSP's gapped (non-prelim): 1115 length of query: 347 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 325 effective length of database: 17,147,199,772 effective search space: 5572839925900 effective search space used: 5572839925900 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)