>PURK_BRUME (P52559) Phosphoribosylaminoimidazole carboxylase ATPase subunit|
           (EC 4.1.1.21) (AIR carboxylase) (AIRC)
          Length = 362

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 127 TCTPNKYKSKYRRRGHVIPTACAGTSLMQSGVRHIAGVVWGNSPHRRRCV 276
           T   N++  +    GH    ACA  S  +  +R +AG+  GN+     CV
Sbjct: 266 TLLANEFAPRVHNSGHWTEAACA-ISQFEQHIRAVAGLPLGNTDRHSDCV 314

>SYI_PYRAE (Q8ZWU4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 981

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +3

Query: 69  YKG---LDLDPTATRTRKTKSNHVYTKQIQEQIPTTWACHS 182
           YKG    D+D   TR  ++K   V+ ++I+ + P  W C S
Sbjct: 367 YKGKHVYDVDKEVTRDLRSKGLLVFEEKIRHEYPHCWRCGS 407

>VP13B_MOUSE (Q80TY5) Vacuolar protein sorting 13B (Cohen syndrome protein 1|
           homolog) (Fragment)
          Length = 1603

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 162 TTWACHSHCMRWYLTHAEWRTSHSWSSVGQLSP 260
           T W   S CM +   H E+R  H    +G  SP
Sbjct: 55  TPWFVPSLCMSFQFAHLEFRLCHHLDQLGTASP 87

>SUR2_CAEEL (Q10669) Protein sur-2|
          Length = 1587

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 57   QHNTYKGLDLDPTATRTRKTKSNHVYTKQIQEQIP 161
            QH+T     +D +  +T + +SNH   +Q+Q QIP
Sbjct: 1453 QHHTSTHQMMDTSQHQTIQQQSNHPTQQQLQHQIP 1487

>GLTL1_MOUSE (Q9JJ61) Putative polypeptide|
           N-acetylgalactosaminyltransferase-like protein 1 (EC
           2.4.1.41) (Protein-UDP
           acetylgalactosaminyltransferase-like protein 1)
           (UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase-like protein 1)
           (Polypeptide G
          Length = 558

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 127 TCTPNKYKSKYRRRGHVIPTACAGTSL 207
           TC P + K K+RRRG  I  + +G  L
Sbjct: 505 TCNPKEGKQKWRRRGSFIQHSVSGLCL 531

>POLG_HRV89 (P07210) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome
          Length = 2163

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 145  YKSKYRRRGHVIPTACAGTSLMQSGVRHI 231
            YKSKY      +P+ CAGTS+  + + +I
Sbjct: 1977 YKSKYYEVEGGMPSGCAGTSIFNTIINNI 2005

>PALI_DEBHA (Q6BNJ2) pH-response regulator protein palI/RIM9|
          Length = 365

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 203 EVPAHAVGMTCPRRRYLLLYLFGVHVIAFCF 111
           E P  A      R RY++  L  VH++ FCF
Sbjct: 83  EYPDFAAAELPSRARYVISKLLVVHIVGFCF 113

>RAII_RHIET (O54451) Autoinducer synthesis protein raiI|
          Length = 212

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +3

Query: 84  LDPTATRTRKTKSNHVYTKQIQEQIPTTWACHSHCM 191
           L  T     K++  H + + I    PTTW C   C+
Sbjct: 72  LPTTGATMLKSEFRHFFDQPIDVDSPTTWECTRFCL 107


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,940,429
Number of Sequences: 219361
Number of extensions: 852563
Number of successful extensions: 2018
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2018
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)