| Clone Name | rbaet26h05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY105945.1| Zea mays PCO115682 mRNA sequence Length = 947 Score = 73.8 bits (37), Expect = 3e-10 Identities = 81/95 (85%), Gaps = 3/95 (3%) Strand = Plus / Minus Query: 249 ggcggcacggcgcagccgcagtcgttgacgagcagctggagggcgaggggcacgtaaagg 308 ||||| |||||||||||||||| ||||||||| || ||| |||| ||||||||| | | Sbjct: 631 ggcgggacggcgcagccgcagt---tgacgagcacctcgagcgcgatgggcacgtagacg 575 Query: 309 gcgaggttgaccaccttggccttgatggcggtgca 343 | || || || |||||||||||||||||||||||| Sbjct: 574 gagatgtcgagcaccttggccttgatggcggtgca 540
>gb|L37070.1|WHTHSP169L Triticum aestivum clone 17LC3 heat shock protein 16.9 (hsp16.9-17LC3) mRNA, partial cds Length = 440 Score = 69.9 bits (35), Expect = 5e-09 Identities = 64/74 (86%), Gaps = 6/74 (8%) Strand = Plus / Plus Query: 100 gtagcactaaatgaacaaaccggaagcgagtggcttcatcgac------acaaccttgat 153 |||| ||||||||||||||| |||||||| ||||||||||||| ||||||||||| Sbjct: 294 gtagtactaaatgaacaaacaggaagcgactggcttcatcgaccgaacaacaaccttgat 353 Query: 154 ttcaaactcgtggc 167 |||||||| ||||| Sbjct: 354 ttcaaacttgtggc 367 Score = 63.9 bits (32), Expect = 3e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 215 ggacggacggacggatcaggcgcaggtgtatcccggcggcacgg 258 |||||||||| ||||||||||||||||||| ||||| ||||||| Sbjct: 390 ggacggacgggcggatcaggcgcaggtgtagcccgggggcacgg 433
>ref|XM_474092.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 783 Score = 60.0 bits (30), Expect = 5e-06 Identities = 92/112 (82%), Gaps = 3/112 (2%) Strand = Plus / Minus Query: 232 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 291 ||||||||||||| || ||||| ||| |||||||||||| ||||||| |||| ||| | Sbjct: 781 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 725 Query: 292 cgaggggcacgtaaagggcgaggttgaccaccttggccttgatggcggtgca 343 ||| ||| | ||| | | || || || |||||||||||||||||||||||| Sbjct: 724 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgca 673
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 60.0 bits (30), Expect = 5e-06 Identities = 92/112 (82%), Gaps = 3/112 (2%) Strand = Plus / Plus Query: 232 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 291 ||||||||||||| || ||||| ||| |||||||||||| ||||||| |||| ||| | Sbjct: 32827138 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 32827194 Query: 292 cgaggggcacgtaaagggcgaggttgaccaccttggccttgatggcggtgca 343 ||| ||| | ||| | | || || || |||||||||||||||||||||||| Sbjct: 32827195 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgca 32827246 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 322 ccttggccttgatggcggtgca 343 |||||||||||||||||||||| Sbjct: 31096020 ccttggccttgatggcggtgca 31095999 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 322 ccttggccttgatggcggtgca 343 |||||||||||||||||||||| Sbjct: 31085601 ccttggccttgatggcggtgca 31085580 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 gacgagcagctggagggcga 294 |||||||||||||||||||| Sbjct: 28874424 gacgagcagctggagggcga 28874405
>dbj|AK105903.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F11, full insert sequence Length = 1255 Score = 60.0 bits (30), Expect = 5e-06 Identities = 92/112 (82%), Gaps = 3/112 (2%) Strand = Plus / Minus Query: 232 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 291 ||||||||||||| || ||||| ||| |||||||||||| ||||||| |||| ||| | Sbjct: 931 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 875 Query: 292 cgaggggcacgtaaagggcgaggttgaccaccttggccttgatggcggtgca 343 ||| ||| | ||| | | || || || |||||||||||||||||||||||| Sbjct: 874 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgca 823
>dbj|AK105778.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-F10, full insert sequence Length = 1242 Score = 60.0 bits (30), Expect = 5e-06 Identities = 92/112 (82%), Gaps = 3/112 (2%) Strand = Plus / Minus Query: 232 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 291 ||||||||||||| || ||||| ||| |||||||||||| ||||||| |||| ||| | Sbjct: 931 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 875 Query: 292 cgaggggcacgtaaagggcgaggttgaccaccttggccttgatggcggtgca 343 ||| ||| | ||| | | || || || |||||||||||||||||||||||| Sbjct: 874 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgca 823
>dbj|AK104623.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-H11, full insert sequence Length = 1251 Score = 60.0 bits (30), Expect = 5e-06 Identities = 92/112 (82%), Gaps = 3/112 (2%) Strand = Plus / Minus Query: 232 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 291 ||||||||||||| || ||||| ||| |||||||||||| ||||||| |||| ||| | Sbjct: 927 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 871 Query: 292 cgaggggcacgtaaagggcgaggttgaccaccttggccttgatggcggtgca 343 ||| ||| | ||| | | || || || |||||||||||||||||||||||| Sbjct: 870 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgca 819
>dbj|AK071989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094H13, full insert sequence Length = 1272 Score = 60.0 bits (30), Expect = 5e-06 Identities = 92/112 (82%), Gaps = 3/112 (2%) Strand = Plus / Minus Query: 232 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 291 ||||||||||||| || ||||| ||| |||||||||||| ||||||| |||| ||| | Sbjct: 935 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 879 Query: 292 cgaggggcacgtaaagggcgaggttgaccaccttggccttgatggcggtgca 343 ||| ||| | ||| | | || || || |||||||||||||||||||||||| Sbjct: 878 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgca 827
>dbj|AK061322.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-F03, full insert sequence Length = 1257 Score = 60.0 bits (30), Expect = 5e-06 Identities = 92/112 (82%), Gaps = 3/112 (2%) Strand = Plus / Minus Query: 232 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 291 ||||||||||||| || ||||| ||| |||||||||||| ||||||| |||| ||| | Sbjct: 933 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 877 Query: 292 cgaggggcacgtaaagggcgaggttgaccaccttggccttgatggcggtgca 343 ||| ||| | ||| | | || || || |||||||||||||||||||||||| Sbjct: 876 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgca 825
>emb|AL732331.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0413E07, complete sequence Length = 76546 Score = 60.0 bits (30), Expect = 5e-06 Identities = 92/112 (82%), Gaps = 3/112 (2%) Strand = Plus / Plus Query: 232 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 291 ||||||||||||| || ||||| ||| |||||||||||| ||||||| |||| ||| | Sbjct: 22373 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 22429 Query: 292 cgaggggcacgtaaagggcgaggttgaccaccttggccttgatggcggtgca 343 ||| ||| | ||| | | || || || |||||||||||||||||||||||| Sbjct: 22430 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgca 22481
>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05, complete sequence Length = 142556 Score = 60.0 bits (30), Expect = 5e-06 Identities = 92/112 (82%), Gaps = 3/112 (2%) Strand = Plus / Plus Query: 232 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 291 ||||||||||||| || ||||| ||| |||||||||||| ||||||| |||| ||| | Sbjct: 89424 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 89480 Query: 292 cgaggggcacgtaaagggcgaggttgaccaccttggccttgatggcggtgca 343 ||| ||| | ||| | | || || || |||||||||||||||||||||||| Sbjct: 89481 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgca 89532
>gb|AC154039.17| Mus musculus 10 BAC RP23-282M20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 210923 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 213 acggacggacggacggatcagg 234 |||||||||||||||||||||| Sbjct: 171016 acggacggacggacggatcagg 170995
>ref|XM_473863.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 465 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 322 ccttggccttgatggcggtgca 343 |||||||||||||||||||||| Sbjct: 370 ccttggccttgatggcggtgca 349
>ref|XM_473862.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 609 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 322 ccttggccttgatggcggtgca 343 |||||||||||||||||||||| Sbjct: 496 ccttggccttgatggcggtgca 475
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17, complete sequence Length = 160484 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 322 ccttggccttgatggcggtgca 343 |||||||||||||||||||||| Sbjct: 78101 ccttggccttgatggcggtgca 78080 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 322 ccttggccttgatggcggtgca 343 |||||||||||||||||||||| Sbjct: 67682 ccttggccttgatggcggtgca 67661
>dbj|AK062781.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-B03, full insert sequence Length = 713 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 322 ccttggccttgatggcggtgca 343 |||||||||||||||||||||| Sbjct: 230 ccttggccttgatggcggtgca 209
>dbj|AK062295.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-F05, full insert sequence Length = 570 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 322 ccttggccttgatggcggtgca 343 |||||||||||||||||||||| Sbjct: 146 ccttggccttgatggcggtgca 125
>gb|AC160060.20| Mus musculus 10 BAC RP23-360L4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 229681 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 213 acggacggacggacggatcagg 234 |||||||||||||||||||||| Sbjct: 70676 acggacggacggacggatcagg 70655
>emb|X57568.1|SGAMYLASE S.griseus DNA for alpha amylase gene, amy Length = 2271 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 321 accttggccttgatggcggtg 341 ||||||||||||||||||||| Sbjct: 982 accttggccttgatggcggtg 962
>gb|DQ393975.1| Cydia pomonella clone Cp4.161 microsatellite sequence Length = 422 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 213 acggacggacggacggatcag 233 ||||||||||||||||||||| Sbjct: 113 acggacggacggacggatcag 93
>gb|M18244.1|STMAMYSL Streptomyces limosus alpha-amylase gene, complete cds Length = 2291 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 321 accttggccttgatggcggtg 341 ||||||||||||||||||||| Sbjct: 975 accttggccttgatggcggtg 955
>ref|XM_636462.1| Dictyostelium discoideum aldehyde dehydrogenase (DDB0231482), partial mRNA Length = 1770 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 acaaatcttacaagatttca 55 |||||||||||||||||||| Sbjct: 339 acaaatcttacaagatttca 358
>ref|NM_194617.1| Oryza sativa (japonica cultivar-group) putative G-protein (OSJNBa0023I19.15), mRNA Length = 1752 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 ccggcggcacggcgcagccg 266 |||||||||||||||||||| Sbjct: 256 ccggcggcacggcgcagccg 237
>ref|XM_467171.1| Oryza sativa (japonica cultivar-group), mRNA Length = 757 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 376 ttggccttgatggcggtgca 357
>ref|NM_197681.1| Oryza sativa (japonica cultivar-group) putative lipid transfer protein (OSJNBa0015J15.6), mRNA Length = 399 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 302 ttggccttgatggcggtgca 283
>ref|NM_197679.1| Oryza sativa (japonica cultivar-group) putative lipid transfer protein (OSJNBa0015J15.8), mRNA Length = 402 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 308 ttggccttgatggcggtgca 289
>ref|NM_197672.1| Oryza sativa (japonica cultivar-group) putative lipid transfer protein (OSJNBa0015J15.15), mRNA Length = 429 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 335 ttggccttgatggcggtgca 316
>ref|XM_473581.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1416 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 gacgagcagctggagggcga 294 |||||||||||||||||||| Sbjct: 93 gacgagcagctggagggcga 74
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 189850 ttggccttgatggcggtgca 189831 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 187146 ttggccttgatggcggtgca 187127
>gb|AY466108.1| Oryza sativa (japonica cultivar-group) lipid transfer protein-like protein (LTP1) mRNA, complete cds Length = 772 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 440 ttggccttgatggcggtgca 421
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 ccggcggcacggcgcagccg 266 |||||||||||||||||||| Sbjct: 1104096 ccggcggcacggcgcagccg 1104077
>emb|Z12103.1|ZMDELINM Z.mays mRNA that delineates a novel subset of cortical cells Length = 594 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 313 ttggccttgatggcggtgca 294
>emb|AL807799.5| Zebrafish DNA sequence from clone CH211-257P7 in linkage group 2, complete sequence Length = 175342 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ggaacggacggacggacgga 229 |||||||||||||||||||| Sbjct: 123816 ggaacggacggacggacgga 123797
>emb|AL929566.30| Zebrafish DNA sequence from clone CH211-159C13 in linkage group 8, complete sequence Length = 137166 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 gaacggacggacggacggat 230 |||||||||||||||||||| Sbjct: 63584 gaacggacggacggacggat 63603
>gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0080O10, from chromosome 3, complete sequence Length = 127917 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 26917 ttggccttgatggcggtgca 26898 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 24213 ttggccttgatggcggtgca 24194
>gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAb0079B22, from chromosome 3, complete sequence Length = 156933 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 123850 ttggccttgatggcggtgca 123831 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 121146 ttggccttgatggcggtgca 121127
>gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 genomic sequence, complete sequence Length = 144798 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 62072 ttggccttgatggcggtgca 62053 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 34187 ttggccttgatggcggtgca 34168 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 27473 ttggccttgatggcggtgca 27454
>gb|AC079037.3| Oryza sativa chromosome 10 clone OSJNBa0023I19, complete sequence Length = 157450 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 ccggcggcacggcgcagccg 266 |||||||||||||||||||| Sbjct: 101549 ccggcggcacggcgcagccg 101530
>emb|BX548249.13| Zebrafish DNA sequence from clone CH211-93A2 in linkage group 21, complete sequence Length = 153142 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ggaacggacggacggacgga 229 |||||||||||||||||||| Sbjct: 66734 ggaacggacggacggacgga 66715
>gb|AC154028.7| Mus musculus 10 BAC RP23-246J13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206191 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 13 caccttccatagccactggatatacaaa 40 |||||||||||||||||| |||||||| Sbjct: 41677 caccttccatagccactgtgtatacaaa 41650
>gb|AC158598.7| Mus musculus 10 BAC RP24-286B23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 162273 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 13 caccttccatagccactggatatacaaa 40 |||||||||||||||||| |||||||| Sbjct: 153678 caccttccatagccactgtgtatacaaa 153651
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 21178233 ttggccttgatggcggtgca 21178252 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 21171519 ttggccttgatggcggtgca 21171538 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 21143634 ttggccttgatggcggtgca 21143653 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 ccggcggcacggcgcagccg 266 |||||||||||||||||||| Sbjct: 1104096 ccggcggcacggcgcagccg 1104077
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 189850 ttggccttgatggcggtgca 189831 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 187146 ttggccttgatggcggtgca 187127
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 aacggacggacggacggatc 231 |||||||||||||||||||| Sbjct: 33695616 aacggacggacggacggatc 33695597 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 26833505 ttggccttgatggcggtgca 26833486
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 gctggagggcgaggggcacg 302 |||||||||||||||||||| Sbjct: 781004 gctggagggcgaggggcacg 780985
>emb|AL840636.10| Zebrafish DNA sequence from clone CH211-262K7 in linkage group 20, complete sequence Length = 174999 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ggaacggacggacggacgga 229 |||||||||||||||||||| Sbjct: 123472 ggaacggacggacggacgga 123453
>gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequence Length = 162241 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 75508 ttggccttgatggcggtgca 75527 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 72804 ttggccttgatggcggtgca 72823
>emb|BX842600.1| Neurospora crassa DNA linkage group II BAC clone B15P20 Length = 74452 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 gaacggacggacggacggat 230 |||||||||||||||||||| Sbjct: 73734 gaacggacggacggacggat 73753
>dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1001_D02 Length = 129081 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 12048 ttggccttgatggcggtgca 12029
>dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1249_F12 Length = 133205 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 aacggacggacggacggatc 231 |||||||||||||||||||| Sbjct: 64023 aacggacggacggacggatc 64004
>dbj|AP004883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0516F12 Length = 146364 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 99558 ttggccttgatggcggtgca 99539
>dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0700F06 Length = 139277 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 aacggacggacggacggatc 231 |||||||||||||||||||| Sbjct: 26483 aacggacggacggacggatc 26464
>emb|AL929281.7| Zebrafish DNA sequence from clone CH211-237I22, complete sequence Length = 148678 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ggaacggacggacggacgga 229 |||||||||||||||||||| Sbjct: 124799 ggaacggacggacggacgga 124818
>dbj|AK121041.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052A13, full insert sequence Length = 1774 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 gacgagcagctggagggcga 294 |||||||||||||||||||| Sbjct: 353 gacgagcagctggagggcga 334
>dbj|AK103618.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133L09, full insert sequence Length = 780 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 461 ttggccttgatggcggtgca 442
>dbj|AK102086.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082M21, full insert sequence Length = 769 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 414 ttggccttgatggcggtgca 395
>dbj|AK069178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008D04, full insert sequence Length = 2067 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 gacgagcagctggagggcga 294 |||||||||||||||||||| Sbjct: 565 gacgagcagctggagggcga 546
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 319 ccaccttggccttgatggcggtgc 342 ||||||||||| |||||||||||| Sbjct: 554606 ccaccttggccgtgatggcggtgc 554583
>dbj|AK062911.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-G07, full insert sequence Length = 757 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 395 ttggccttgatggcggtgca 376
>dbj|AK062654.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-E10, full insert sequence Length = 736 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 422 ttggccttgatggcggtgca 403
>dbj|AK062381.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-B09, full insert sequence Length = 702 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 371 ttggccttgatggcggtgca 352
>dbj|AK061150.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-E04, full insert sequence Length = 1634 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 gacgagcagctggagggcga 294 |||||||||||||||||||| Sbjct: 139 gacgagcagctggagggcga 120
>dbj|AK058218.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-F04, full insert sequence Length = 757 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 376 ttggccttgatggcggtgca 357
>gb|AY104687.1| Zea mays PCO121733 mRNA sequence Length = 680 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 375 ttggccttgatggcggtgca 356
>gb|AY105236.1| Zea mays PCO121732 mRNA sequence Length = 763 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 381 ttggccttgatggcggtgca 362
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 271 cgttgacgagcagctggagggcga 294 ||||||||||| |||||||||||| Sbjct: 5613674 cgttgacgagcggctggagggcga 5613697
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 21189497 ttggccttgatggcggtgca 21189516 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 21182783 ttggccttgatggcggtgca 21182802 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 21154898 ttggccttgatggcggtgca 21154917 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 ccggcggcacggcgcagccg 266 |||||||||||||||||||| Sbjct: 1104093 ccggcggcacggcgcagccg 1104074
>gb|AF001634.1|AF001634 Zea mays physical impedance induced protein (IIG1) mRNA, complete cds Length = 677 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttggccttgatggcggtgca 343 |||||||||||||||||||| Sbjct: 388 ttggccttgatggcggtgca 369
>emb|AL606640.4|OSJN00071 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019K04, complete sequence Length = 154865 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 gacgagcagctggagggcga 294 |||||||||||||||||||| Sbjct: 86586 gacgagcagctggagggcga 86567 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,409,244 Number of Sequences: 3902068 Number of extensions: 2409244 Number of successful extensions: 61217 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60725 Number of HSP's gapped (non-prelim): 482 length of query: 343 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 321 effective length of database: 17,147,199,772 effective search space: 5504251126812 effective search space used: 5504251126812 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)