ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet26e09 |
|---|---|
| Clone Library Name | barley_pub |
>A4_CAEEL (Q10651) Beta-amyloid-like protein precursor| Length = 686 Score = 26.9 bits (58), Expect(2) = 0.72 Identities = 9/19 (47%), Positives = 10/19 (52%) Frame = +1 Query: 91 HTNVHDTCTDYTTWESSAG 147 H N D C DY W+ AG Sbjct: 139 HVNSRDQCNDYQHWKDEAG 157 Score = 23.5 bits (49), Expect(2) = 0.72 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%) Frame = +2 Query: 191 ISCSHDWIYRT--QQTKPDEDIFDDE 262 + C +D +T Q+TK DED DDE Sbjct: 193 VCCPNDQTNKTDVQKTKEDEDDDDDE 218
>RPOC_THEFY (Q47LI6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1291 Score = 30.0 bits (66), Expect = 2.4 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Frame = +3 Query: 297 DRARGVVHDVIADTAQEHPLELAKAPAPND---QAADGHVMDGLA 422 +RAR VV DV+ + EHP+ L +AP + QA + +++G A Sbjct: 477 ERARPVVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLVEGKA 521
>RPOC_BLOFL (Q7VRP8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1420 Score = 30.0 bits (66), Expect = 2.4 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +3 Query: 297 DRARGVVHDVIADTAQEHPLELAKAP 374 DR VV D++ D +EHP+ L +AP Sbjct: 404 DREESVVWDILEDVIKEHPVMLNRAP 429
>RPOC_LEUPS (P94899) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) (Fragment) Length = 989 Score = 29.6 bits (65), Expect = 3.2 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +3 Query: 297 DRARGVVHDVIADTAQEHPLELAKAP 374 D+A G V DV+ D +EHP+ L +AP Sbjct: 325 DKADGDVMDVLEDVIKEHPVLLNRAP 350
>RPOC_LEUME (P94892) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) (Fragment) Length = 989 Score = 29.6 bits (65), Expect = 3.2 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +3 Query: 297 DRARGVVHDVIADTAQEHPLELAKAP 374 D+A G V DV+ D +EHP+ L +AP Sbjct: 325 DKADGDVMDVLEDVIKEHPVLLNRAP 350
>RPOC_STRCO (Q8CJT1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1299 Score = 29.6 bits (65), Expect = 3.2 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Frame = +3 Query: 297 DRARGVVHDVIADTAQEHPLELAKAPAPND---QAADGHVMDGLA 422 +R R VV+DV+ + EHP+ L +AP + QA + +++G A Sbjct: 477 ERGRTVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKA 521
>RPOC_STRAW (Q82DQ4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1299 Score = 29.6 bits (65), Expect = 3.2 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Frame = +3 Query: 297 DRARGVVHDVIADTAQEHPLELAKAPAPND---QAADGHVMDGLA 422 +R R VV+DV+ + EHP+ L +AP + QA + +++G A Sbjct: 477 ERGRTVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKA 521
>ELP3_ARATH (Q93ZR1) Probable histone acetyltransferase ELO3 (EC 2.3.1.48)| (Protein ELONGATA 3) (Elongator component 3) (Elongation protein 3) Length = 565 Score = 29.6 bits (65), Expect = 3.2 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +3 Query: 87 EAHKRTRHMHRLHNLGIIRGLIVNHYYKQ 173 EA + R HR + +G+I G+ HYY++ Sbjct: 522 EAERIARREHRSNKIGVISGVGTRHYYRK 550
>RPOC_PASMU (Q9CK92) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1417 Score = 29.3 bits (64), Expect = 4.1 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +3 Query: 297 DRARGVVHDVIADTAQEHPLELAKAP 374 +R +V D++AD +EHP+ L +AP Sbjct: 403 EREDAIVWDILADVIREHPILLNRAP 428
>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)| Length = 3530 Score = 28.9 bits (63), Expect = 5.4 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = -1 Query: 310 PRARSPLSSQRAPMPDLVIENILIWFSLLSPIYP 209 PRARS ++R P P + W +LLSP P Sbjct: 633 PRARSSNDARRPPAPQPAPRTLSHWSALLSPPVP 666
>SDK1_CHICK (Q8AV58) Protein sidekick-1 precursor| Length = 2169 Score = 28.9 bits (63), Expect = 5.4 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = +2 Query: 50 HGLTHGAKVRLKRSTQTYTTHAQITQPGNHPRANCQSL 163 HG+ G LK+ T YT+ T PG+ PR+ Q L Sbjct: 880 HGVHSGCITNLKKYTTYYTSVLCFTTPGDGPRSAPQLL 917
>RPOC_HAEI8 (Q4QN34) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1416 Score = 28.5 bits (62), Expect = 7.1 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = +3 Query: 297 DRARGVVHDVIADTAQEHPLELAKAP 374 +R +V D++A+ +EHP+ L +AP Sbjct: 403 EREEAIVWDILAEVIREHPILLNRAP 428
>RPOC_PROAC (Q6A6K7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1293 Score = 28.5 bits (62), Expect = 7.1 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Frame = +3 Query: 297 DRARGVVHDVIADTAQEHPLELAKAPAPND---QAADGHVMDGLA 422 +R R VV DV+ + +EHP+ L +AP + QA + +++G A Sbjct: 477 ERQRPVVWDVLEEVIKEHPVLLNRAPTLHRLGIQAFEPQLIEGKA 521
>RPOC_LEGPL (Q5WZL8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 28.1 bits (61), Expect = 9.2 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +3 Query: 297 DRARGVVHDVIADTAQEHPLELAKAP 374 +R VV D++ D +EHP+ L +AP Sbjct: 402 EREESVVWDILDDVIREHPILLNRAP 427
>RPOC_LEGPH (Q5ZYP9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 28.1 bits (61), Expect = 9.2 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +3 Query: 297 DRARGVVHDVIADTAQEHPLELAKAP 374 +R VV D++ D +EHP+ L +AP Sbjct: 402 EREESVVWDILDDVIREHPILLNRAP 427
>RPOC_LEGPA (Q5X865) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 28.1 bits (61), Expect = 9.2 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +3 Query: 297 DRARGVVHDVIADTAQEHPLELAKAP 374 +R VV D++ D +EHP+ L +AP Sbjct: 402 EREESVVWDILDDVIREHPILLNRAP 427
>RAD50_THEAC (Q9HLR8) DNA double-strand break repair rad50 ATPase| Length = 896 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/61 (22%), Positives = 30/61 (49%) Frame = +2 Query: 71 KVRLKRSTQTYTTHAQITQPGNHPRANCQSLLQTTTLHGSISCSHDWIYRTQQTKPDEDI 250 ++ + TY IT+ +P +N ++ + L S+ ++D+I + TK +D+ Sbjct: 70 EMEFRHGGHTYIIRRSITRRSKNPESNAMIMVDGSALSQSVKDANDYIEKNIITK-SKDV 128 Query: 251 F 253 F Sbjct: 129 F 129
>SDK1_MOUSE (Q3UH53) Protein sidekick-1 precursor| Length = 2193 Score = 28.1 bits (61), Expect = 9.2 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +2 Query: 50 HGLTHGAKVRLKRSTQTYTTHAQITQPGNHPRANCQ 157 HG+ HG LK+ T +T+ T PG+ P ++ Q Sbjct: 910 HGIHHGYITNLKKFTAYFTSVLCFTTPGDGPPSSPQ 945
>VE7_HPV50 (Q80928) Protein E7| Length = 93 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/45 (31%), Positives = 20/45 (44%) Frame = -1 Query: 148 SPRMIPRLCNLCMCRVRLCASLQPNFCTVSQSVLLFAACVMFIQF 14 SP I C C CRVRLC C + + + C++ +F Sbjct: 39 SPFKIDSTCKHCHCRVRLC-------CVATDAAIRVFECLLQSEF 76 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,366,969 Number of Sequences: 219361 Number of extensions: 1123151 Number of successful extensions: 2908 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2817 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2908 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
