ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet26e08 |
|---|---|
| Clone Library Name | barley_pub |
>PCOA_ECOLI (Q47452) Copper resistance protein A precursor| Length = 605 Score = 32.3 bits (72), Expect = 0.28 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +1 Query: 94 YGHMAGLDSSRRHGVPSGRSDPATERGAANVQCHCHAMQPKL 219 + MAG+D SR G+P +S PA+E V ++ PKL Sbjct: 415 HSSMAGMDHSRMAGMPGMQSHPASETDNPLVDMQAMSVSPKL 456
>VG10_SHV21 (P24913) Hypothetical gene 10 protein| Length = 407 Score = 31.6 bits (70), Expect = 0.48 Identities = 21/64 (32%), Positives = 29/64 (45%) Frame = +2 Query: 38 DQNTKFSHRRHHTLHNLSGMGIWQGSTRLDVMVYQVVDRIQQQNGGQPMCSATAMPCSQN 217 DQ F +HT + IW T L + VY +RI G C A A+PC + Sbjct: 294 DQPALFVASSNHTTKYVVKPQIWYPITPLSITVYNPSNRIIFIKRG--FCVAVAVPCFFH 351 Query: 218 LRSP 229 L++P Sbjct: 352 LKAP 355
>POLG_HCVVN (O92530) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3012 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = -2 Query: 165 CCWIRSTTWYTMTSRRVEPCHMPIPDKLCSV*CLR 61 C W+ ST YT T PCH+ PD+ C C R Sbjct: 552 CTWMNSTG-YTKTCG-APPCHIGPPDQFCPTDCFR 584
>VAL1_CLVN (P14972) AL1 protein (40.4 kDa protein)| Length = 358 Score = 29.6 bits (65), Expect = 1.8 Identities = 22/72 (30%), Positives = 32/72 (44%) Frame = +2 Query: 146 VDRIQQQNGGQPMCSATAMPCSQNLRSPPLLTIAGSDRVTDKLAHTH*PNEKEDDGTSKS 325 +DRI Q+ P + PCS + P L +D V D A PN +G S++ Sbjct: 168 LDRIFQE---PPAPYVSPFPCSSFDQVPDELEEWVADNVRDSAARPWRPNSIVIEGDSRT 224 Query: 326 GKRLYTLVLHAH 361 GK ++ L H Sbjct: 225 GKTIWARSLGPH 236
>SOX8_HUMAN (P57073) Transcription factor SOX-8| Length = 446 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/55 (34%), Positives = 26/55 (47%) Frame = +1 Query: 88 IGYGHMAGLDSSRRHGVPSGRSDPATERGAANVQCHCHAMQPKLEVAPPVDDRRQ 252 +G GH G + + HG P+ + P TE A + + KLE PVD RQ Sbjct: 208 LGDGHHHGDHTGQTHGPPTPPTTPKTELQQAGAK-----PELKLEGRRPVDSGRQ 257
>VAL1_CLVK (P14982) AL1 protein (40.4 kDa protein)| Length = 358 Score = 28.5 bits (62), Expect = 4.1 Identities = 21/72 (29%), Positives = 32/72 (44%) Frame = +2 Query: 146 VDRIQQQNGGQPMCSATAMPCSQNLRSPPLLTIAGSDRVTDKLAHTH*PNEKEDDGTSKS 325 +DRI Q+ P + PCS + P + +D V D A PN +G S++ Sbjct: 168 LDRIFQE---PPAPYVSPFPCSSFDQVPVEIEEWVADNVRDSAARPWRPNSIVIEGDSRT 224 Query: 326 GKRLYTLVLHAH 361 GK ++ L H Sbjct: 225 GKTIWARSLGPH 236
>TM86B_MOUSE (Q497J1) Transmembrane protein 86B| Length = 226 Score = 28.1 bits (61), Expect = 5.4 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 14/56 (25%) Frame = -3 Query: 374 SRTWHVHGALVCIAVSRFCL--------------SRHLLFR*VSGCVPVCPSLDHC 249 S TW + GALVC AV CL HL + G P+ P L C Sbjct: 72 SSTWLLQGALVCSAVGDACLIWPEAFFYGTAAFSVAHLFYLGAFGLTPLQPGLLLC 127
>FANCA_HUMAN (O15360) Fanconi anemia group A protein (Protein FACA)| Length = 1455 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/47 (23%), Positives = 22/47 (46%) Frame = -1 Query: 271 FVRHSITAGDRQQGGRPQVLAAWHGSGTAHWLPPVLLLDPIDHLVHH 131 F ++ AG +++ +++ W G + H L V+ DP+ H Sbjct: 276 FALDALAAGVQEESSTHKIVRCWFGVFSGHTLGSVISTDPLKRFFSH 322
>NIFK_METBA (P51754) Nitrogenase molybdenum-iron protein beta chain (EC| 1.18.6.1) (Nitrogenase component I) (Dinitrogenase) Length = 456 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -3 Query: 362 HVHGALVCIAVSRFCLSRH 306 H HG+ C++ R CLSRH Sbjct: 41 HSHGSQGCLSYLRMCLSRH 59
>GALT3_MOUSE (P70419) Polypeptide N-acetylgalactosaminyltransferase 3 (EC| 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 3) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 3) (Polypeptide GalNAc transferase 3) (GalNAc-T3) (pp-GaNTase 3) Length = 633 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Frame = -1 Query: 313 PVIFFFVRLVG--VCQFVRHSITAGDRQQGGRPQVLAAWHGSG 191 PVI +++ VG +C + G+ QGG+P +L HG G Sbjct: 503 PVISGYIKSVGQPLC------LDVGENNQGGKPLILYTCHGLG 539
>WDHD1_MOUSE (P59328) WD repeat and HMG-box DNA-binding protein 1 (Acidic| nucleoplasmic DNA-binding protein 1) (And-1) Length = 1117 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = +2 Query: 47 TKFSHRRHHTLHNLSGMGIWQGSTRLDVMVYQVVDRIQQQ 166 T+F+ +H + N +G I GS+ V V V+D QQQ Sbjct: 91 TRFTTNANHVVFNGAGNKIAAGSSDFLVKVVDVMDNSQQQ 130
>ISPH_SHIFL (Q7UDT8) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 316 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +2 Query: 95 MGIWQGSTRLDVMVYQVVDRIQQQNGGQ 178 +G+ G++ D++V VV R+QQ GG+ Sbjct: 262 VGVTAGASAPDILVQNVVARLQQLGGGE 289
>ISPH_ECOLI (P62623) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 316 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +2 Query: 95 MGIWQGSTRLDVMVYQVVDRIQQQNGGQ 178 +G+ G++ D++V VV R+QQ GG+ Sbjct: 262 VGVTAGASAPDILVQNVVARLQQLGGGE 289
>ISPH_ECOL6 (P62624) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 316 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +2 Query: 95 MGIWQGSTRLDVMVYQVVDRIQQQNGGQ 178 +G+ G++ D++V VV R+QQ GG+ Sbjct: 262 VGVTAGASAPDILVQNVVARLQQLGGGE 289
>ISPH_ECO57 (P62625) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 316 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +2 Query: 95 MGIWQGSTRLDVMVYQVVDRIQQQNGGQ 178 +G+ G++ D++V VV R+QQ GG+ Sbjct: 262 VGVTAGASAPDILVQNVVARLQQLGGGE 289
>CSKI1_RAT (Q8VHK2) Caskin-1 (CASK-interacting protein 1)| Length = 1430 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/50 (36%), Positives = 23/50 (46%) Frame = -1 Query: 241 RQQGGRPQVLAAWHGSGTAHWLPPVLLLDPIDHLVHHDVETSRALPYAHT 92 + Q G PQ L HG TA P LL P D + + R+LP + T Sbjct: 785 KAQPGSPQALGGPHGPATAKVKPTPQLLPPTDRPM-----SPRSLPQSPT 829
>NHR91_CAEEL (Q9U2R6) Nuclear hormone receptor family member nhr-91| Length = 474 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = +2 Query: 230 PLLTIAGSDRVTDKLAHTH*PNEKEDDGTSKSGKRLYTLV 349 P + + D +T + T PN + DD TS + K L++++ Sbjct: 41 PPMKLDMRDSMTPSFSQTESPNSETDDSTSAANKVLFSIL 80
>CSKI1_MOUSE (Q6P9K8) Caskin-1 (CASK-interacting protein 1)| Length = 1431 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/50 (36%), Positives = 23/50 (46%) Frame = -1 Query: 241 RQQGGRPQVLAAWHGSGTAHWLPPVLLLDPIDHLVHHDVETSRALPYAHT 92 + Q G PQ L HG TA P LL P D + + R+LP + T Sbjct: 786 KAQPGSPQALGGPHGPATAKVKPTPQLLPPTDRPM-----SPRSLPQSPT 830
>GPC2_HUMAN (Q8N158) Glypican-2 precursor| Length = 579 Score = 27.3 bits (59), Expect = 9.1 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%) Frame = -1 Query: 271 FVRHSITA-GDRQQGGRPQVLAA--WHGSGTAHWLPPVLLLDPIDHLVHHDVETSRALPY 101 + R S+T GD + + AA W G+G +LPPV+ P + + + +++ + P Sbjct: 405 WARLSLTVCGDSRMAADASLEAAPCWTGAGRGRYLPPVVGGSPAEQVNNPELKVDASGPD 464 Query: 100 AHTR 89 TR Sbjct: 465 VPTR 468
>SWI6_YEAST (P09959) Regulatory protein SWI6 (Cell-cycle box factor, chain| SWI6) (Trans-acting activator of HO endonuclease gene) (MBF subunit P90) Length = 803 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = -1 Query: 202 HGSGTAHWLPPVLLLDPIDHLVHH 131 HG+ HWL + L+ + HLV H Sbjct: 317 HGNTPLHWLTSIANLELVKHLVKH 340 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,688,202 Number of Sequences: 219361 Number of extensions: 1327295 Number of successful extensions: 3415 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3311 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3410 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
