>YD89_SCHPO (Q10414) Hypothetical protein C1F3.09 in chromosome I|
          Length = 561

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 23/85 (27%), Positives = 40/85 (47%)
 Frame = -3

Query: 351 PESSDFFNLIKELTAPAFSSFAGTFSCLEAARSLEKESAYDHSLRADTCKAFYHRASYFA 172
           P+ ++ F+  K  TA  F S   + S L      E  SA ++  ++++  +  +R S   
Sbjct: 285 PQQTNKFHKSKSSTA-LFKSKKDSSSSLNKMHKSESHSALNNLHKSESGTSLNNRRSKVG 343

Query: 171 VFSSFFCPPLPNVVIVHSLSCNSEA 97
             S FFC   PNV +   ++  +EA
Sbjct: 344 PGSCFFCLSNPNVALHLIVAIGNEA 368

>TNR1A_MOUSE (P25118) Tumor necrosis factor receptor superfamily member 1A|
           precursor (p60) (TNF-R1) (TNF-RI) (TNFR-I) (p55)
          Length = 454

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 254 RWRKKVHTIIH*EPIHVKPFTIERAILPFSLPFFAP 147
           RWR +V++II  +P+ VK     + + P   P F+P
Sbjct: 239 RWRPEVYSIICRDPVPVKEEKAGKPLTPAPSPAFSP 274

>CCA_FRATT (Q5NIG4) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA|
           nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-
           transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT)
          Length = 360

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 38  QKYLLILTIITSHRLYQFYSASLLQLKECTITTL 139
           +KYL I   IT HR YQ    ++  +K  +I +L
Sbjct: 308 KKYLKICDTITPHRNYQLLQTTINTIKNASIDSL 341

>ATM_NEUCR (Q7RZT9) Serine/threonine-protein kinase tel-1 (EC 2.7.11.1)|
           (DNA-damage checkpoint kinase tel-1) (Telomere length
           regulation protein 1) (ATM homolog)
          Length = 2953

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 351 PESSDFFNLIKELTAP 304
           P+S DFFNL+ E++AP
Sbjct: 810 PQSEDFFNLVLEVSAP 825

>MST2_SCHPO (Q10325) Protein mst2|
          Length = 407

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
 Frame = +2

Query: 26  TTSQQKYLLILTIITSHRLYQFYSASLLQL-KECTITTLGNGGQXXXXXXXXXXXXXXXX 202
           +T+  K LLI+   T+   Y FY   LL+L  E T   L   GQ                
Sbjct: 8   STASSKTLLIIKFDTNSSRYPFYKKHLLELNSESTFLGLLTKGQADTSITRLNQDDVRLF 67

Query: 203 XHVSALNE*SYALSFS-SDLAASKQLKVP 286
                + + +  +++S SD   S QL+ P
Sbjct: 68  EKAKTVADRTKDVAYSFSDPILSTQLRTP 96


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,563,944
Number of Sequences: 219361
Number of extensions: 865749
Number of successful extensions: 1908
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1908
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)