ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet26d07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470112.1| Oryza sativa (japonica cultivar-group), mRNA 107 1e-20
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 107 1e-20
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 107 1e-20
4gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genom... 107 1e-20
5dbj|AK104541.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 1e-20
6dbj|AK065071.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 1e-20
7dbj|AK061407.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 1e-20
8gb|AY108866.1| Zea mays PCO116267 mRNA sequence 94 2e-16
9dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 64 2e-07
10dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic D... 64 2e-07
11dbj|AP005760.3| Oryza sativa (japonica cultivar-group) genomic D... 64 2e-07
12dbj|AK106651.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 2e-07
13ref|XM_479393.1| Oryza sativa (japonica cultivar-group), mRNA 62 8e-07
14dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 62 8e-07
15dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic D... 62 8e-07
16ref|NM_192390.1| Oryza sativa (japonica cultivar-group), predic... 52 7e-04
17ref|XM_473115.1| Oryza sativa (japonica cultivar-group), predic... 52 7e-04
18emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4,... 52 7e-04
19emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4,... 52 7e-04
20dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 52 7e-04
21dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 52 7e-04
22dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic D... 52 7e-04
23dbj|AK073036.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 7e-04
24dbj|AK071432.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 7e-04
25dbj|AK069291.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 7e-04
26ref|XM_470109.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.045
27dbj|AK111450.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.045
28gb|AC121364.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.18
29gb|AC137634.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.18
30dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.18
31dbj|AK110898.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.18
32gb|AF109220.1|AF109220 Ramalina culbersoniorum strain 5a 18S rib... 44 0.18
33gb|BT024109.1| Zea mays clone EL01N0518E03 mRNA sequence 44 0.18
34dbj|AK065359.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.18
35gb|AY111065.1| Zea mays CL4363_2 mRNA sequence 44 0.18
36gb|AY111273.1| Zea mays CL33564_1 mRNA sequence 42 0.71
37gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 40 2.8
38gb|AC120877.15| Mus musculus chromosome 6, clone RP24-548D19, co... 40 2.8
39gb|AE014075.1| Escherichia coli CFT073, complete genome 40 2.8
40gb|CP000243.1| Escherichia coli UTI89, complete genome 40 2.8
41gb|U00096.2| Escherichia coli K-12 MG1655, complete genome 40 2.8
42gb|U00006.1|ECOUW89 E. coli chromosomal region from 89.2 to 92.8... 40 2.8
43dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome 40 2.8
44gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 40 2.8
45emb|X16584.1|ECMTHM E. coli metH gene for 5-Methyltetrahydrofola... 40 2.8
46gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 40 2.8
47dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 40 2.8
48gb|CP000034.1| Shigella dysenteriae Sd197, complete genome 40 2.8
49gb|DQ272318.1| Escherichia coli strain B834 cobalamin-dependent ... 40 2.8
50gb|CP000036.1| Shigella boydii Sb227, complete genome 40 2.8
51gb|CP000038.1| Shigella sonnei Ss046, complete genome 40 2.8
52gb|J04975.1|ECOMETH E.coli methionine synthase (metH) gene, comp... 40 2.8 
>ref|XM_470112.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1454

 Score =  107 bits (54), Expect = 1e-20
 Identities = 78/86 (90%)
 Strand = Plus / Minus

                                                                        
Query: 134  gtcagagcgcctggtcgctggccgggaagaagagcttccagtacagcagctcgttccatg 193
            |||||| ||||| |||||  || |||||||||||||||||||| |||||||||||||| |
Sbjct: 1222 gtcagatcgcctcgtcgcgcgcggggaagaagagcttccagtagagcagctcgttccacg 1163

                                      
Query: 194  cgtcgggcacgccggggaggcaccag 219
            ||||||| ||||||||||||||||||
Sbjct: 1162 cgtcggggacgccggggaggcaccag 1137
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  107 bits (54), Expect = 1e-20
 Identities = 78/86 (90%)
 Strand = Plus / Plus

                                                                            
Query: 134      gtcagagcgcctggtcgctggccgggaagaagagcttccagtacagcagctcgttccatg 193
                |||||| ||||| |||||  || |||||||||||||||||||| |||||||||||||| |
Sbjct: 34007642 gtcagatcgcctcgtcgcgcgcggggaagaagagcttccagtagagcagctcgttccacg 34007701

                                          
Query: 194      cgtcgggcacgccggggaggcaccag 219
                ||||||| ||||||||||||||||||
Sbjct: 34007702 cgtcggggacgccggggaggcaccag 34007727



 Score = 46.1 bits (23), Expect = 0.045
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                       
Query: 181      agctcgttccatgcgtcgggcacgccggggaggcaccag 219
                |||| ||||||  ||||||| ||||||||||||||||||
Sbjct: 33986116 agctggttccagacgtcggggacgccggggaggcaccag 33986154



 Score = 44.1 bits (22), Expect = 0.18
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 186      gttccatgcgtcgggcacgccggggaggcaccag 219
                |||||||| ||| ||||||||||||| |||||||
Sbjct: 10092152 gttccatgtgtccggcacgccggggatgcaccag 10092119
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  107 bits (54), Expect = 1e-20
 Identities = 78/86 (90%)
 Strand = Plus / Plus

                                                                            
Query: 134      gtcagagcgcctggtcgctggccgggaagaagagcttccagtacagcagctcgttccatg 193
                |||||| ||||| |||||  || |||||||||||||||||||| |||||||||||||| |
Sbjct: 34098114 gtcagatcgcctcgtcgcgcgcggggaagaagagcttccagtagagcagctcgttccacg 34098173

                                          
Query: 194      cgtcgggcacgccggggaggcaccag 219
                ||||||| ||||||||||||||||||
Sbjct: 34098174 cgtcggggacgccggggaggcaccag 34098199



 Score = 46.1 bits (23), Expect = 0.045
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                       
Query: 181      agctcgttccatgcgtcgggcacgccggggaggcaccag 219
                |||| ||||||  ||||||| ||||||||||||||||||
Sbjct: 34076588 agctggttccagacgtcggggacgccggggaggcaccag 34076626



 Score = 44.1 bits (22), Expect = 0.18
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 186      gttccatgcgtcgggcacgccggggaggcaccag 219
                |||||||| ||| ||||||||||||| |||||||
Sbjct: 10090273 gttccatgtgtccggcacgccggggatgcaccag 10090240
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>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete
             sequence
          Length = 172337

 Score =  107 bits (54), Expect = 1e-20
 Identities = 78/86 (90%)
 Strand = Plus / Minus

                                                                         
Query: 134   gtcagagcgcctggtcgctggccgggaagaagagcttccagtacagcagctcgttccatg 193
             |||||| ||||| |||||  || |||||||||||||||||||| |||||||||||||| |
Sbjct: 50049 gtcagatcgcctcgtcgcgcgcggggaagaagagcttccagtagagcagctcgttccacg 49990

                                       
Query: 194   cgtcgggcacgccggggaggcaccag 219
             ||||||| ||||||||||||||||||
Sbjct: 49989 cgtcggggacgccggggaggcaccag 49964



 Score = 46.1 bits (23), Expect = 0.045
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 181   agctcgttccatgcgtcgggcacgccggggaggcaccag 219
             |||| ||||||  ||||||| ||||||||||||||||||
Sbjct: 71575 agctggttccagacgtcggggacgccggggaggcaccag 71537
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>dbj|AK104541.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-A10, full
            insert sequence
          Length = 1392

 Score =  107 bits (54), Expect = 1e-20
 Identities = 78/86 (90%)
 Strand = Plus / Minus

                                                                        
Query: 134  gtcagagcgcctggtcgctggccgggaagaagagcttccagtacagcagctcgttccatg 193
            |||||| ||||| |||||  || |||||||||||||||||||| |||||||||||||| |
Sbjct: 1207 gtcagatcgcctcgtcgcgcgcggggaagaagagcttccagtagagcagctcgttccacg 1148

                                      
Query: 194  cgtcgggcacgccggggaggcaccag 219
            ||||||| ||||||||||||||||||
Sbjct: 1147 cgtcggggacgccggggaggcaccag 1122
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>dbj|AK065071.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001K07, full
            insert sequence
          Length = 3436

 Score =  107 bits (54), Expect = 1e-20
 Identities = 78/86 (90%)
 Strand = Plus / Minus

                                                                        
Query: 134  gtcagagcgcctggtcgctggccgggaagaagagcttccagtacagcagctcgttccatg 193
            |||||| ||||| |||||  || |||||||||||||||||||| |||||||||||||| |
Sbjct: 3190 gtcagatcgcctcgtcgcgcgcggggaagaagagcttccagtagagcagctcgttccacg 3131

                                      
Query: 194  cgtcgggcacgccggggaggcaccag 219
            ||||||| ||||||||||||||||||
Sbjct: 3130 cgtcggggacgccggggaggcaccag 3105
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>dbj|AK061407.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A07, full
            insert sequence
          Length = 1437

 Score =  107 bits (54), Expect = 1e-20
 Identities = 78/86 (90%)
 Strand = Plus / Minus

                                                                        
Query: 134  gtcagagcgcctggtcgctggccgggaagaagagcttccagtacagcagctcgttccatg 193
            |||||| ||||| |||||  || |||||||||||||||||||| |||||||||||||| |
Sbjct: 1252 gtcagatcgcctcgtcgcgcgcggggaagaagagcttccagtagagcagctcgttccacg 1193

                                      
Query: 194  cgtcgggcacgccggggaggcaccag 219
            ||||||| ||||||||||||||||||
Sbjct: 1192 cgtcggggacgccggggaggcaccag 1167
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>gb|AY108866.1| Zea mays PCO116267 mRNA sequence
          Length = 858

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 59/63 (93%)
 Strand = Plus / Minus

                                                                       
Query: 157 gggaagaagagcttccagtacagcagctcgttccatgcgtcgggcacgccggggaggcac 216
           |||||||||||||||||||| |||||||||||||| | ||| ||||||||||||||||||
Sbjct: 537 gggaagaagagcttccagtagagcagctcgttccacgtgtccggcacgccggggaggcac 478

              
Query: 217 cag 219
           |||
Sbjct: 477 cag 475
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                        
Query: 180      cagctcgttccatgcgtcgggcacgccggggaggcaccag 219
                |||||||||||| ||||| |||||||||||||||||||||
Sbjct: 26766904 cagctcgttccacgcgtccggcacgccggggaggcaccag 26766865
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>dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0051O02
          Length = 169532

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                     
Query: 180   cagctcgttccatgcgtcgggcacgccggggaggcaccag 219
             |||||||||||| ||||| |||||||||||||||||||||
Sbjct: 21530 cagctcgttccacgcgtccggcacgccggggaggcaccag 21491
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>dbj|AP005760.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1047G05
          Length = 145431

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                      
Query: 180    cagctcgttccatgcgtcgggcacgccggggaggcaccag 219
              |||||||||||| ||||| |||||||||||||||||||||
Sbjct: 124367 cagctcgttccacgcgtccggcacgccggggaggcaccag 124328
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>dbj|AK106651.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-F10, full
            insert sequence
          Length = 1621

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                    
Query: 180  cagctcgttccatgcgtcgggcacgccggggaggcaccag 219
            |||||||||||| ||||| |||||||||||||||||||||
Sbjct: 1427 cagctcgttccacgcgtccggcacgccggggaggcaccag 1388
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>ref|XM_479393.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1326

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                   
Query: 181  agctcgttccatgcgtcgggcacgccggggaggcaccag 219
            ||||||||||| ||||| |||||||||||||||||||||
Sbjct: 1292 agctcgttccacgcgtccggcacgccggggaggcaccag 1254
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 181      agctcgttccatgcgtcgggcacgccggggaggcaccag 219
                ||||||||||| ||||| |||||||||||||||||||||
Sbjct: 27533748 agctcgttccacgcgtccggcacgccggggaggcaccag 27533710
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>dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0018C07
          Length = 141707

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                    
Query: 181   agctcgttccatgcgtcgggcacgccggggaggcaccag 219
             ||||||||||| ||||| |||||||||||||||||||||
Sbjct: 97719 agctcgttccacgcgtccggcacgccggggaggcaccag 97681
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>ref|NM_192390.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1179

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 186  gttccatgcgtcgggcacgccggggaggcaccag 219
            |||||||||||| |||||||||| ||||||||||
Sbjct: 1149 gttccatgcgtccggcacgccggcgaggcaccag 1116
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>ref|XM_473115.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2136

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                          
Query: 174  gtacagcagctcgttccatgcgtcgggcacgccggggaggcaccag 219
            |||||||||||||||||| |  || ||||||||||| |||||||||
Sbjct: 2094 gtacagcagctcgttccaggaatccggcacgccgggcaggcaccag 2049
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>emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002J11,
              complete sequence
          Length = 143582

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                            
Query: 174    gtacagcagctcgttccatgcgtcgggcacgccggggaggcaccag 219
              |||||||||||||||||| |  || ||||||||||| |||||||||
Sbjct: 139390 gtacagcagctcgttccaggaatccggcacgccgggcaggcaccag 139435
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>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24,
             complete sequence
          Length = 164577

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                           
Query: 174   gtacagcagctcgttccatgcgtcgggcacgccggggaggcaccag 219
             |||||||||||||||||| |  || ||||||||||| |||||||||
Sbjct: 82010 gtacagcagctcgttccaggaatccggcacgccgggcaggcaccag 82055
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                              
Query: 174      gtacagcagctcgttccatgcgtcgggcacgccggggaggcaccag 219
                |||||||||||||||||| |  || ||||||||||| |||||||||
Sbjct: 25355451 gtacagcagctcgttccaggaatccggcacgccgggcaggcaccag 25355496
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                  
Query: 186      gttccatgcgtcgggcacgccggggaggcaccag 219
                |||||||||||| |||||||||| ||||||||||
Sbjct: 26363100 gttccatgcgtccggcacgccggcgaggcaccag 26363133
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>dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0032K15
          Length = 126195

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                               
Query: 186   gttccatgcgtcgggcacgccggggaggcaccag 219
             |||||||||||| |||||||||| ||||||||||
Sbjct: 36965 gttccatgcgtccggcacgccggcgaggcaccag 36998
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>dbj|AK073036.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023147O12, full
            insert sequence
          Length = 2659

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 186  gttccatgcgtcgggcacgccggggaggcaccag 219
            |||||||||||| |||||||||| ||||||||||
Sbjct: 1215 gttccatgcgtccggcacgccggcgaggcaccag 1182
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>dbj|AK071432.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092D01, full
            insert sequence
          Length = 2488

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                          
Query: 174  gtacagcagctcgttccatgcgtcgggcacgccggggaggcaccag 219
            |||||||||||||||||| |  || ||||||||||| |||||||||
Sbjct: 2186 gtacagcagctcgttccaggaatccggcacgccgggcaggcaccag 2141
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>dbj|AK069291.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013B17, full
            insert sequence
          Length = 1557

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 186  gttccatgcgtcgggcacgccggggaggcaccag 219
            |||||||||||| |||||||||| ||||||||||
Sbjct: 1197 gttccatgcgtccggcacgccggcgaggcaccag 1164
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>ref|XM_470109.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1422

 Score = 46.1 bits (23), Expect = 0.045
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 181  agctcgttccatgcgtcgggcacgccggggaggcaccag 219
            |||| ||||||  ||||||| ||||||||||||||||||
Sbjct: 1397 agctggttccagacgtcggggacgccggggaggcaccag 1359
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>dbj|AK111450.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-B10, full
            insert sequence
          Length = 1616

 Score = 46.1 bits (23), Expect = 0.045
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 181  agctcgttccatgcgtcgggcacgccggggaggcaccag 219
            |||| ||||||  ||||||| ||||||||||||||||||
Sbjct: 1473 agctggttccagacgtcggggacgccggggaggcaccag 1435
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>gb|AC121364.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0052E20, complete sequence
          Length = 162434

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 194   cgtcgggcacgccggggaggcaccag 219
             ||||||| ||||||||||||||||||
Sbjct: 40296 cgtcggggacgccggggaggcaccag 40321
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>gb|AC137634.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0078C05, complete sequence
          Length = 122116

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 186   gttccatgcgtcgggcacgccggggaggcaccag 219
             |||||||| ||| ||||||||||||| |||||||
Sbjct: 37773 gttccatgtgtccggcacgccggggatgcaccag 37740
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 194      cgtcgggcacgccggggaggcaccag 219
                ||||||| ||||||||||||||||||
Sbjct: 22936283 cgtcggggacgccggggaggcaccag 22936308
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>dbj|AK110898.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-A08, full
            insert sequence
          Length = 1567

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 186  gttccatgcgtcgggcacgccggggaggcaccag 219
            |||||||| ||| ||||||||||||| |||||||
Sbjct: 1362 gttccatgtgtccggcacgccggggatgcaccag 1329
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>gb|AF109220.1|AF109220 Ramalina culbersoniorum strain 5a 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, 5.8S ribosomal
           RNA gene and internal transcribed spacer 2, complete
           sequence; and 25S ribosomal RNA gene, partial sequence
          Length = 527

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 196 tcgggcacgccggggaggcacc 217
           ||||||||||||||||||||||
Sbjct: 383 tcgggcacgccggggaggcacc 362
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>gb|BT024109.1| Zea mays clone EL01N0518E03 mRNA sequence
          Length = 1885

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 186  gttccatgcgtcgggcacgccggggaggcaccag 219
            |||||| | ||| |||||||||||||||||||||
Sbjct: 1658 gttccacgtgtccggcacgccggggaggcaccag 1625
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>dbj|AK065359.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013007F12, full
            insert sequence
          Length = 2034

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 194  cgtcgggcacgccggggaggcaccag 219
            ||||||| ||||||||||||||||||
Sbjct: 1476 cgtcggggacgccggggaggcaccag 1451
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>gb|AY111065.1| Zea mays CL4363_2 mRNA sequence
          Length = 1402

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 186  gttccatgcgtcgggcacgccggggaggcaccag 219
            |||||| | ||| |||||||||||||||||||||
Sbjct: 1078 gttccacgtgtccggcacgccggggaggcaccag 1045
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>gb|AY111273.1| Zea mays CL33564_1 mRNA sequence
          Length = 545

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 183 ctcgttccatgcgtcgggcacgccggggaggcaccag 219
           |||||||||  ||||||| ||||| ||||||||||||
Sbjct: 310 ctcgttccagacgtcggggacgcctgggaggcaccag 346
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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 143     cctggtcgctggccgggaag 162
               ||||||||||||||||||||
Sbjct: 4244239 cctggtcgctggccgggaag 4244258
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>gb|AC120877.15| Mus musculus chromosome 6, clone RP24-548D19, complete sequence
          Length = 228206

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      cagggaacacacatttgatc 22
              ||||||||||||||||||||
Sbjct: 117369 cagggaacacacatttgatc 117350
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 143     cctggtcgctggccgggaag 162
               ||||||||||||||||||||
Sbjct: 4755438 cctggtcgctggccgggaag 4755457
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 143     cctggtcgctggccgggaag 162
               ||||||||||||||||||||
Sbjct: 4472310 cctggtcgctggccgggaag 4472329
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>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 143     cctggtcgctggccgggaag 162
               ||||||||||||||||||||
Sbjct: 4224708 cctggtcgctggccgggaag 4224727
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>gb|U00006.1|ECOUW89 E. coli chromosomal region from 89.2 to 92.8 minutes
          Length = 176195

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   cctggtcgctggccgggaag 162
             ||||||||||||||||||||
Sbjct: 91927 cctggtcgctggccgggaag 91946
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>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 143     cctggtcgctggccgggaag 162
               ||||||||||||||||||||
Sbjct: 4230275 cctggtcgctggccgggaag 4230294
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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 143     cctggtcgctggccgggaag 162
               ||||||||||||||||||||
Sbjct: 3527982 cctggtcgctggccgggaag 3527963
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>emb|X16584.1|ECMTHM E. coli metH gene for 5-Methyltetrahydrofolate-homocysteine (vitamin
            B12) methyltransferase (E.C. 2.1.1.13)
          Length = 4098

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 143  cctggtcgctggccgggaag 162
            ||||||||||||||||||||
Sbjct: 3080 cctggtcgctggccgggaag 3099
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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 143     cctggtcgctggccgggaag 162
               ||||||||||||||||||||
Sbjct: 5103831 cctggtcgctggccgggaag 5103850
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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 143     cctggtcgctggccgggaag 162
               ||||||||||||||||||||
Sbjct: 5035086 cctggtcgctggccgggaag 5035105
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>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 143     cctggtcgctggccgggaag 162
               ||||||||||||||||||||
Sbjct: 4049648 cctggtcgctggccgggaag 4049629
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>gb|DQ272318.1| Escherichia coli strain B834 cobalamin-dependent homocysteine
            transmethylase (metH) gene, complete cds
          Length = 4153

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 143  cctggtcgctggccgggaag 162
            ||||||||||||||||||||
Sbjct: 3118 cctggtcgctggccgggaag 3137
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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 143     cctggtcgctggccgggaag 162
               ||||||||||||||||||||
Sbjct: 4083325 cctggtcgctggccgggaag 4083344
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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 143     cctggtcgctggccgggaag 162
               ||||||||||||||||||||
Sbjct: 4442155 cctggtcgctggccgggaag 4442174
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>gb|J04975.1|ECOMETH E.coli methionine synthase (metH) gene, complete cds
          Length = 4097

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 143  cctggtcgctggccgggaag 162
            ||||||||||||||||||||
Sbjct: 3080 cctggtcgctggccgggaag 3099


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,282,550
Number of Sequences: 3902068
Number of extensions: 1282550
Number of successful extensions: 81995
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81384
Number of HSP's gapped (non-prelim): 611
length of query: 219
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 197
effective length of database: 17,147,199,772
effective search space: 3377998355084
effective search space used: 3377998355084
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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