ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaet26b12 |
|---|---|
| Clone Library Name | barley_pub |
>DPYD_PIG (Q28943) Dihydropyrimidine dehydrogenase [NADP+] precursor (EC| 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1025 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -2 Query: 271 SCQCGLRTAQMSLACGQDEKLVVHVAKMKKGSVAFVTF 158 SC G+ M LACGQD +LV ++ + + +V F Sbjct: 670 SCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFF 707
>DPYD_HUMAN (Q12882) Dihydropyrimidine dehydrogenase [NADP+] precursor (EC| 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1025 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -2 Query: 271 SCQCGLRTAQMSLACGQDEKLVVHVAKMKKGSVAFVTF 158 SC G+ M LACGQD +LV ++ + + +V F Sbjct: 670 SCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFF 707
>DPYD_BOVIN (Q28007) Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2) (DPD)| (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1025 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -2 Query: 271 SCQCGLRTAQMSLACGQDEKLVVHVAKMKKGSVAFVTF 158 SC G+ M LACGQD +LV ++ + + +V F Sbjct: 670 SCPHGMGERGMGLACGQDPELVRNICRWVRQAVRIPFF 707
>RCEM_RHOCA (P11847) Reaction center protein M chain (Photosynthetic reaction| center M subunit) Length = 306 Score = 28.9 bits (63), Expect = 3.4 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = +1 Query: 175 PILFSSWPHAPPIFHLAHMQGTFVLSADH 261 PIL SW APP +H+ T S DH Sbjct: 163 PILMGSWSVAPPYGIFSHLDWTNQFSLDH 191
>FLBA_EMENI (P38093) Developmental regulator flbA| Length = 719 Score = 28.9 bits (63), Expect = 3.4 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Frame = +3 Query: 69 HTTTEYKHDHTVPTASSIQSLA*LWFHPLQNVTKATDPFFILATCTTNFSSCPH--ARDI 242 H K+DHT + +I +L L F + DP I+ T TT S AR + Sbjct: 249 HRVRFTKYDHTFTSEEAINNLGSLKFSQSNRMPDPKDPSRIVTTTTTTTFSMAKEMARSV 308 Query: 243 C 245 C Sbjct: 309 C 309
>AMT1_CAEEL (P54145) Putative ammonium transporter 1| Length = 534 Score = 28.5 bits (62), Expect = 4.4 Identities = 11/34 (32%), Positives = 16/34 (47%) Frame = -3 Query: 297 HGSWWLLMVLVNVVCGQHKCPLHVGKMKNWWCMW 196 HG W LL+ + + G KM+ W C+W Sbjct: 288 HGKWTLLLTINACLSGMVAACAGCNKMEPWACIW 321
>XYLT_DROPS (Q5QQ53) Xylosyltransferase oxt (EC 2.4.2.26) (Peptide| O-xylosyltransferase) Length = 880 Score = 28.1 bits (61), Expect = 5.8 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%) Frame = -2 Query: 313 ASMSCSWQL-----VVIDGSCQCGLRTAQMSLACGQDEK 212 A ++CS Q + + SC G TA +SL C +DEK Sbjct: 111 AQIACSIQAGRFYAIQLKSSCPSGNHTANVSLGCYRDEK 149
>NUDH_HAEDU (Q7VPB7) Probable (di)nucleoside polyphosphate hydrolase (EC| 3.6.1.-) Length = 197 Score = 28.1 bits (61), Expect = 5.8 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = -3 Query: 186 KKDRWLLLRSVADETIVMLKT 124 +K RW LL+ V+DE+ V LKT Sbjct: 96 QKQRWFLLQLVSDESAVNLKT 116
>CD2L7_CAEEL (P46551) Putative cell division cycle 2-related protein kinase 7| (EC 2.7.11.22) Length = 730 Score = 27.7 bits (60), Expect = 7.6 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 4/52 (7%) Frame = +2 Query: 146 SSATERNKSHRSFFHLGHMHHQFFILPTCKGHLCCPQTTLTR----TINNHQ 289 ++ T+ N S H H HH LP GH P T+ + NNHQ Sbjct: 666 TTTTKSNGSSNHHHHHHHSHHHASSLPPSGGHAPPPPPPPTQASSTSHNNHQ 717
>PYP2_SCHPO (P32586) Tyrosine-protein phosphatase 2 (EC 3.1.3.48)| (Protein-tyrosine phosphatase 2) (PTPase 2) Length = 711 Score = 27.7 bits (60), Expect = 7.6 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%) Frame = +3 Query: 105 PTASSIQSLA*LWFHPLQ---NVTKATDPFFILATCTTNFSSCPHARD 239 PTASS++S ++ PL + +A P+F ++ + SSCP D Sbjct: 217 PTASSVRSCQSIYGSPLSPPNSAFQAEMPYFPISPAISCASSCPSTPD 264
>YMV2_CAEEL (P34504) Hypothetical protein K04H4.2 precursor| Length = 967 Score = 27.7 bits (60), Expect = 7.6 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +2 Query: 227 TCKGHLCCPQTTLT 268 TC ++CCPQTT T Sbjct: 471 TCSNNVCCPQTTTT 484
>MDR10_ARATH (Q9SGY1) Multidrug resistance protein 10 (P-glycoprotein 10)| Length = 1316 Score = 27.7 bits (60), Expect = 7.6 Identities = 14/50 (28%), Positives = 29/50 (58%) Frame = -2 Query: 187 KKGSVAFVTFCSG*NHSYAKDCMLLAVGTVWSCLYSVVVCRLYIMIGCML 38 K+ SV+F+ S + DC+L+A+G++ +C++ V +I G ++ Sbjct: 20 KRPSVSFLKLFS---FADFYDCVLMALGSIGACIHGASVPVFFIFFGKLI 66
>CY43_TRYBB (Q99280) Receptor-type adenylate cyclase GRESAG 4.3 (EC 4.6.1.1)| (ATP pyrophosphate-lyase) (Adenylyl cyclase) Length = 1229 Score = 27.3 bits (59), Expect = 9.9 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +2 Query: 188 HLGHMHHQFFILPTCKGHLCCPQT 259 H G+M H +F+ P G CP T Sbjct: 158 HEGYMPHLYFLRPEATGESYCPST 181 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,562,908 Number of Sequences: 219361 Number of extensions: 960203 Number of successful extensions: 2346 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2308 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2339 length of database: 80,573,946 effective HSP length: 81 effective length of database: 62,805,705 effective search space used: 1507336920 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
