| Clone Name | rbaet26b12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009027.1| Triticum aestivum clone wdk3c.pk021.e13:fis, full insert mRNA sequence Length = 1612 Score = 272 bits (137), Expect = 6e-70 Identities = 264/303 (87%), Gaps = 15/303 (4%) Strand = Plus / Minus Query: 19 tttattaaactccagcctccaacatgcacccaatcattatatagagacgacatacaacaa 78 ||||||||||||||| ||||||||||||||||||||| |||| ||| ||||||||| Sbjct: 1554 tttattaaactccagtctccaacatgcacccaatcat-----agaggcgatatacaacaa 1500 Query: 79 cagaata----taaacatgaccatacggttcccactgctagcagcatacagtctttagca 134 || |||| |||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct: 1499 caaaatacttataaacatgac-atacggttcc-actgctagcagcatacagtctttagca 1442 Query: 135 taactatggtttcatccgctacagaacgtaacaaaagccaccgatccttttttcatcttg 194 || ||| ||||| ||||||||| | | ||||| | || ||| |||||| |||| || Sbjct: 1441 tagctagggtttgatccgctaccaagcataacagatgcaacctatcctt----catcctg 1386 Query: 195 gccacatgcaccaccaatttttcatcttgcccacatgcaagggacatttgtgctgtccgc 254 |||||||||||||||| || ||||||||| |||||||||||||||||||||||| ||||| Sbjct: 1385 gccacatgcaccaccacttcttcatcttggccacatgcaagggacatttgtgctatccgc 1326 Query: 255 agaccacattgacaagaaccatcaataaccaccagctgccatgaacagctcatcgaggct 314 |||||||| ||||||||||||||||||||||||||| |||||||| |||||||| ||||| Sbjct: 1325 agaccacactgacaagaaccatcaataaccaccagccgccatgaagagctcatcaaggct 1266 Query: 315 cca 317 ||| Sbjct: 1265 cca 1263
>gb|AY831392.1| Oryza sativa (indica cultivar-group) BTH-induced ERF transcriptional factor 1 (BIERF1) mRNA, complete cds Length = 1613 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 284 caccagctgccatgaacagctcatcgaggctcca 317 ||||||||||||||| ||||||||| |||||||| Sbjct: 1211 caccagctgccatgagcagctcatcaaggctcca 1178
>gb|DQ417199.1| Oryza sativa (japonica cultivar-group) putative EREBP transcription factor (EREBP) mRNA, complete cds Length = 1445 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 284 caccagctgccatgaacagctcatcgaggctcca 317 ||||||||||||||| ||||||||| |||||||| Sbjct: 1188 caccagctgccatgagcagctcatcaaggctcca 1155
>gb|AF364176.1| Oryza sativa putative EREBP-type transcription factor mRNA, complete cds Length = 1584 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 284 caccagctgccatgaacagctcatcgaggctcca 317 ||||||||||||||| ||||||||| |||||||| Sbjct: 1262 caccagctgccatgagcagctcatcaaggctcca 1229
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 284 caccagctgccatgaacagctcatcgaggctcca 317 ||||||||||||||| ||||||||| |||||||| Sbjct: 15907586 caccagctgccatgagcagctcatcaaggctcca 15907553
>dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1081_G10 Length = 107955 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 284 caccagctgccatgaacagctcatcgaggctcca 317 ||||||||||||||| ||||||||| |||||||| Sbjct: 70712 caccagctgccatgagcagctcatcaaggctcca 70679
>dbj|AK111690.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008G03, full insert sequence Length = 1603 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 284 caccagctgccatgaacagctcatcgaggctcca 317 ||||||||||||||| ||||||||| |||||||| Sbjct: 1292 caccagctgccatgagcagctcatcaaggctcca 1259
>dbj|AK104576.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-A07, full insert sequence Length = 1596 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 284 caccagctgccatgaacagctcatcgaggctcca 317 ||||||||||||||| ||||||||| |||||||| Sbjct: 1286 caccagctgccatgagcagctcatcaaggctcca 1253
>dbj|AK104723.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B05, full insert sequence Length = 1596 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 284 caccagctgccatgaacagctcatcgaggctcca 317 ||||||||||||||| ||||||||| |||||||| Sbjct: 1286 caccagctgccatgagcagctcatcaaggctcca 1253
>gb|AF215937.1|AF215937 Homo sapiens 3pv2 and 5p152 genes, complete cds, complete sequence Length = 143340 Score = 46.1 bits (23), Expect = 0.068 Identities = 23/23 (100%) Strand = Plus / Plus Query: 221 ttgcccacatgcaagggacattt 243 ||||||||||||||||||||||| Sbjct: 58727 ttgcccacatgcaagggacattt 58749
>emb|AL355094.3|CNS05TCD Human chromosome 14 DNA sequence BAC R-676P5 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 170273 Score = 46.1 bits (23), Expect = 0.068 Identities = 23/23 (100%) Strand = Plus / Minus Query: 221 ttgcccacatgcaagggacattt 243 ||||||||||||||||||||||| Sbjct: 4156 ttgcccacatgcaagggacattt 4134
>emb|AL161756.6|CNS01RHJ Human chromosome 14 DNA sequence BAC R-712C19 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 176257 Score = 46.1 bits (23), Expect = 0.068 Identities = 23/23 (100%) Strand = Plus / Minus Query: 221 ttgcccacatgcaagggacattt 243 ||||||||||||||||||||||| Sbjct: 148513 ttgcccacatgcaagggacattt 148491
>gb|AF061054.1|AF061054 Homo sapiens estrogen receptor beta 4 splice variant mRNA, partial cds Length = 659 Score = 46.1 bits (23), Expect = 0.068 Identities = 23/23 (100%) Strand = Plus / Minus Query: 221 ttgcccacatgcaagggacattt 243 ||||||||||||||||||||||| Sbjct: 262 ttgcccacatgcaagggacattt 240
>gb|AC087890.18| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, RP23-348F2, Complete Sequence, complete sequence Length = 194881 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 286 ccagctgccatgaacagctca 306 ||||||||||||||||||||| Sbjct: 180890 ccagctgccatgaacagctca 180910
>emb|BX950219.10| Mouse DNA sequence from clone RP23-303E24 on chromosome 4, complete sequence Length = 167874 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 aaccatcaataaccaccagct 291 ||||||||||||||||||||| Sbjct: 58533 aaccatcaataaccaccagct 58513
>gb|AC079680.34| Mus musculus strain C57BL/6J chromosome 10 clone rp23-282p18, complete sequence Length = 175217 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 286 ccagctgccatgaacagctca 306 ||||||||||||||||||||| Sbjct: 64305 ccagctgccatgaacagctca 64325
>gb|AC114409.17| Mus musculus chromosome 5, clone RP23-148F6, complete sequence Length = 222692 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 caccagctgccatgaacagc 303 |||||||||||||||||||| Sbjct: 38373 caccagctgccatgaacagc 38354
>gb|AC123033.4| Mus musculus BAC clone RP24-482F14 from chromosome 5, complete sequence Length = 180745 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 caccagctgccatgaacagc 303 |||||||||||||||||||| Sbjct: 171209 caccagctgccatgaacagc 171190
>emb|BX664616.16| Zebrafish DNA sequence from clone DKEY-231P15 in linkage group 8, complete sequence Length = 193090 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 tttttcatcttgcccacatg 231 |||||||||||||||||||| Sbjct: 47155 tttttcatcttgcccacatg 47174 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,038,488 Number of Sequences: 3902068 Number of extensions: 3038488 Number of successful extensions: 47279 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47238 Number of HSP's gapped (non-prelim): 38 length of query: 317 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 295 effective length of database: 17,147,199,772 effective search space: 5058423932740 effective search space used: 5058423932740 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)