>RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (RNA polymerase II subunit 1)
          Length = 1599

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -3

Query: 364 CHGCSTMSCPRPGTSSPWPMAWGMSSSGRCCSGK 263
           C  CS +  PR G  S     WGMS     C G+
Sbjct: 101 CFYCSKIKIPRKGIKSTLSNVWGMSKGRSVCEGE 134

>RP54_RHISN (P22881) RNA polymerase sigma-54 factor|
          Length = 525

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +3

Query: 171 KKLKHRSTKNSSTQKTGKHQTTSL*LTLASFFPEQHRPEDDIPHAIGHGEEVPGRG 338
           + + H    +S+T   G+   + L    A+ F +   P+ D P  +G  + +PG G
Sbjct: 79  ESVDHGDLYDSATTSPGERLRSELDADFANVFQDDTAPQRDAPELLGQWKSMPGAG 134

>LYPD5_MOUSE (Q9D7Z7) Ly6/PLAUR domain-containing protein 5 precursor|
          Length = 256

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -3

Query: 355 CSTMSCPRPGTSSPWPMAWGMSSSGRCCSGK--NEASVS 245
           C   SC   GT+SPW     +   G CC G   N ASV+
Sbjct: 182 CHRPSCTTMGTTSPWT---SIDLQGYCCEGHLCNRASVT 217

>DHYS_AERPE (Q9YE72) Probable deoxyhypusine synthase (EC 2.5.1.46) (DHS)|
          Length = 292

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -1

Query: 297 GCHPQDDVARGKMKRVLARVMLSG---AFLSSVCYCFLCSC 184
           G HP++ V+ GK+K    RV++ G     L  + YC L  C
Sbjct: 251 GAHPREAVSWGKIKESSRRVVVYGDATITLPVIAYCLLHGC 291

>CR1KA_BACTM (Q45715) Pesticidal crystal protein cry1Ka (Insecticidal|
           delta-endotoxin CryIK(a)) (Crystaline entomocidal
           protoxin) (137 kDa crystal protein)
          Length = 1215

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 331 PGTSSPWPMAWGMSSSGRC 275
           PGT SPWP + G+  SGRC
Sbjct: 807 PGTESPWPSS-GVYPSGRC 824

>LYPD5_HUMAN (Q6UWN5) Ly6/PLAUR domain containing protein 5 precursor|
          Length = 251

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 355 CSTMSCPRPGTSSPWPMAWGMSSSGRCCSG 266
           C   SC   GT+SPW     +   G CC G
Sbjct: 184 CHRPSCTTEGTTSPWT---AIDLQGSCCEG 210

>CBLB_MOUSE (Q3TTA7) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.-) (Signal|
           transduction protein CBL-B) (SH3-binding protein CBL-B)
           (Casitas B-lineage lymphoma proto-oncogene b)
          Length = 982

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 282 PEDDIPHAIGHGEEVPGRGQLMVLHPWQP 368
           P++ +     HGE VP R Q M L  W P
Sbjct: 566 PDNRLSRHFHHGESVPSRDQPMPLEAWCP 594

>YJDC_XENLA (Q5XH48) YjeF domain-containing protein 1|
          Length = 505

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 302 CHRPWGRGARPWAAHGTAPM 361
           C +PW R A  WA H  AP+
Sbjct: 417 CDQPWYRAAVDWANHNRAPV 436

>CBLB_RAT (Q8K4S7) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.-) (Signal|
           transduction protein CBL-B) (SH3-binding protein CBL-B)
           (Casitas B-lineage lymphoma proto-oncogene b)
          Length = 938

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 282 PEDDIPHAIGHGEEVPGRGQLMVLHPWQP 368
           P+  +     HGE VP R Q M L  W P
Sbjct: 566 PDSRLSRHFHHGESVPSRDQPMPLEAWCP 594

>GDF6_MOUSE (P43028) Growth/differentiation factor 6 precursor (GDF-6)|
           (Growth/differentiation factor 16)
          Length = 454

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +3

Query: 189 STKNSSTQKTGKHQTTSL*LTLASFFPEQHRPEDDI---PHAIGHGEEVPGRGQLMVLHP 359
           STK+   +K GK Q T          PE    + D+   P     G+E PGRG  +V H 
Sbjct: 40  STKDVGNRKEGKMQRTPQESAEGRTPPEHGLRQKDLRRRPPGQHQGQEPPGRGLRVVPHE 99

Query: 360 W 362
           +
Sbjct: 100 Y 100

>MUCDL_HUMAN (Q9HBB8) Mucin and cadherin-like protein precursor|
           (Mu-protocadherin)
          Length = 845

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 358 GCSTMSCPRPGTSSPWPMAWGMSSSG 281
           G  T   P PGTS P P++    SSG
Sbjct: 629 GGGTAQTPEPGTSQPMPLSKSTPSSG 654



 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 349 TMSCPRPGTSSPWPMAWGMSSS 284
           T+  P PGTS P P + G S+S
Sbjct: 570 TVQTPEPGTSQPMPPSMGTSTS 591



 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 358 GCSTMSCPRPGTSSPWPMAWGMSSS 284
           G  T   P+PGTS P P   G S+S
Sbjct: 536 GGDTAQTPKPGTSQPMPPGVGTSTS 560

>STK23_MOUSE (Q9Z0G2) Serine/threonine-protein kinase 23 (EC 2.7.11.1)|
           (Muscle-specific serine kinase 1) (MSSK-1)
          Length = 565

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 379 TSRRGCHGCSTMSCPRPGTSSPWP 308
           TS  GCH   T + P P +SSP P
Sbjct: 313 TSSSGCHPEGTRAGPSPASSSPVP 336

>GDF6_RAT (Q6HA10) Growth/differentiation factor 6 precursor (GDF-6)|
           (Growth/differentiation factor 16)
          Length = 452

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +3

Query: 189 STKNSSTQKTGKHQTTSL*LTLASFFPEQHRPEDD-----IPHAIGHGEEVPGRGQLMVL 353
           STK+   +K GK Q T    +     P++HRP  +     +P     G+E PGRG  +V 
Sbjct: 38  STKDVENRKGGKMQRTPQ-ESAEGRTPKEHRPRPNELRRRLPGQ-SLGQEPPGRGPRVVP 95

Query: 354 HPW 362
           H +
Sbjct: 96  HEY 98

>AQP11_MOUSE (Q8BHH1) Aquaporin-11 (AQP-11)|
          Length = 271

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -1

Query: 267 GKMKRVLARVMLSGAFLSSVCYCFLCSCVLISFNNVALFHYTKRLLLCRN 118
           G M   +  V L    +S++C  + C   L S + +  +HY +R+L CRN
Sbjct: 110 GGMSPEMGAVRLLAQLVSALCSRY-CISALWSLS-LTKYHYDERILACRN 157


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,082,719
Number of Sequences: 219361
Number of extensions: 899559
Number of successful extensions: 2701
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2701
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)