ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet25g02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome... 123 4e-25
2gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome... 123 4e-25
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 123 4e-25
4dbj|AK104366.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 4e-25
5dbj|AK104199.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 4e-25
6dbj|AK070043.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 4e-25
7gb|BT016325.1| Zea mays clone Contig158 mRNA sequence 107 3e-20
8gb|AY104589.1| Zea mays PCO067801 mRNA sequence 107 3e-20
9ref|XM_367013.1| Magnaporthe grisea 70-15 chromosome VII hypothe... 54 3e-04
10gb|AC162030.8| Medicago truncatula clone mth2-178b21, complete s... 54 3e-04
11ref|XM_748615.1| Aspergillus fumigatus Af293 hypothetical protei... 50 0.005
12emb|AJ879936.2| Capsicum chinense mRNA for putative receptor ass... 50 0.005
13ref|NM_116196.1| Arabidopsis thaliana glutamate binding AT3G6331... 48 0.020
14gb|BT020236.1| Arabidopsis thaliana At3g63310 gene, complete cds 48 0.020
15emb|AL163818.1|ATMAA21 Arabidopsis thaliana DNA chromosome 3, P1... 48 0.020
16emb|AL138648.2|ATF16M2 Arabidopsis thaliana DNA chromosome 3, BA... 48 0.020
17gb|BT021132.1| Arabidopsis thaliana At3g63310 gene, complete cds 48 0.020
18emb|BX470168.7| Zebrafish DNA sequence from clone CH211-288L20 i... 46 0.079
19emb|BX322791.7| Zebrafish DNA sequence from clone RP71-55E12, co... 46 0.079
20emb|BX825703.1|CNS0A67U Arabidopsis thaliana Full-length cDNA Co... 46 0.079
21gb|BT014369.1| Lycopersicon esculentum clone 133657R, mRNA sequence 44 0.31
22gb|BT014225.1| Lycopersicon esculentum clone 133420R, mRNA sequence 44 0.31
23gb|AC159332.11| Mus musculus 6 BAC RP23-413D8 (Roswell Park Canc... 44 0.31
24emb|CR388214.5| Zebrafish DNA sequence from clone CH211-269E4 in... 44 0.31
25emb|AL954324.10| Zebrafish DNA sequence from clone DKEY-35P13 in... 42 1.2
26ref|XM_389598.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 42 1.2
27emb|BX324123.4| Zebrafish DNA sequence from clone DKEY-106L3 in ... 42 1.2
28gb|DQ397838.1| Cenarchaeum symbiosum clone C03H05, complete sequ... 42 1.2
29dbj|AB194635.1| Leek yellow stripe virus gene for coat protein, ... 42 1.2
30dbj|AB194634.1| Leek yellow stripe virus gene for coat protein, ... 42 1.2
31gb|AC007156.2|AC007156 Homo sapiens chromosome 18, clone hRPK.41... 42 1.2
32dbj|AP005271.4| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 1.2
33gb|AC138769.4| Mus musculus chromosome 18 clone RP23-235B1, comp... 40 4.9
34emb|AL672211.7| Zebrafish DNA sequence from clone BUSM1-6A2 in l... 40 4.9
35emb|CR450720.5| Zebrafish DNA sequence from clone DKEYP-51F11 in... 40 4.9
36gb|AF097907.1| Rana catesbeiana myosin heavy chain (MHC-4) mRNA,... 40 4.9
37gb|DQ397875.1| Cenarchaeum symbiosum clone C07F02, complete sequ... 40 4.9
38gb|DQ397873.1| Cenarchaeum symbiosum clone C13A11, complete sequ... 40 4.9
39gb|DQ397858.1| Cenarchaeum symbiosum clone C05G02, complete sequ... 40 4.9
40gb|DQ397630.1| Cenarchaeum symbiosum clone C01C08, complete sequ... 40 4.9
41gb|DQ060521.1| Bean yellow mosaic virus polyprotein mRNA, partia... 40 4.9
42emb|BX276115.11| Zebrafish DNA sequence from clone DKEY-274M17 i... 40 4.9
43emb|BX465842.5| Zebrafish DNA sequence from clone DKEY-164P3 in ... 40 4.9
44gb|AC026736.4|AC026736 Homo sapiens chromosome 5 clone CTD-2350M... 40 4.9
45emb|BX957241.13| Zebrafish DNA sequence from clone CH211-197N10 ... 40 4.9
46emb|BX276097.12| Zebrafish DNA sequence from clone DKEY-97C6 in ... 40 4.9
47emb|AL954739.9| Zebrafish DNA sequence from clone CH211-192K9 in... 40 4.9
48emb|BX004994.6| Zebrafish DNA sequence from clone DKEY-24J15 in ... 40 4.9
49emb|BX001024.7| Zebrafish DNA sequence from clone CH211-42I24, c... 40 4.9 
>gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0035J16,
              complete sequence
          Length = 170233

 Score =  123 bits (62), Expect = 4e-25
 Identities = 86/94 (91%)
 Strand = Plus / Plus

                                                                          
Query: 270    aggaacaggttgaggatgtcgaggtaaagttcaacagaagcccagatgtactcgtcataa 329
              ||||||| |||||||||||| ||||| || |||||||| ||||| ||||| |||||||||
Sbjct: 147801 aggaacaagttgaggatgtcaaggtagagctcaacagaggcccaaatgtagtcgtcataa 147860

                                                
Query: 330    gtgtggcgctttatcaagttctcagtgtcgtaga 363
              ||||||||||||||||||||||| ||||||||||
Sbjct: 147861 gtgtggcgctttatcaagttctctgtgtcgtaga 147894
to top
>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0006J12, complete sequence
          Length = 157069

 Score =  123 bits (62), Expect = 4e-25
 Identities = 86/94 (91%)
 Strand = Plus / Plus

                                                                         
Query: 270   aggaacaggttgaggatgtcgaggtaaagttcaacagaagcccagatgtactcgtcataa 329
             ||||||| |||||||||||| ||||| || |||||||| ||||| ||||| |||||||||
Sbjct: 45164 aggaacaagttgaggatgtcaaggtagagctcaacagaggcccaaatgtagtcgtcataa 45223

                                               
Query: 330   gtgtggcgctttatcaagttctcagtgtcgtaga 363
             ||||||||||||||||||||||| ||||||||||
Sbjct: 45224 gtgtggcgctttatcaagttctctgtgtcgtaga 45257
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  123 bits (62), Expect = 4e-25
 Identities = 86/94 (91%)
 Strand = Plus / Plus

                                                                            
Query: 270      aggaacaggttgaggatgtcgaggtaaagttcaacagaagcccagatgtactcgtcataa 329
                ||||||| |||||||||||| ||||| || |||||||| ||||| ||||| |||||||||
Sbjct: 19444452 aggaacaagttgaggatgtcaaggtagagctcaacagaggcccaaatgtagtcgtcataa 19444511

                                                  
Query: 330      gtgtggcgctttatcaagttctcagtgtcgtaga 363
                ||||||||||||||||||||||| ||||||||||
Sbjct: 19444512 gtgtggcgctttatcaagttctctgtgtcgtaga 19444545
to top
>dbj|AK104366.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-D07, full
           insert sequence
          Length = 1060

 Score =  123 bits (62), Expect = 4e-25
 Identities = 86/94 (91%)
 Strand = Plus / Minus

                                                                       
Query: 270 aggaacaggttgaggatgtcgaggtaaagttcaacagaagcccagatgtactcgtcataa 329
           ||||||| |||||||||||| ||||| || |||||||| ||||| ||||| |||||||||
Sbjct: 832 aggaacaagttgaggatgtcaaggtagagctcaacagaggcccaaatgtagtcgtcataa 773

                                             
Query: 330 gtgtggcgctttatcaagttctcagtgtcgtaga 363
           ||||||||||||||||||||||| ||||||||||
Sbjct: 772 gtgtggcgctttatcaagttctctgtgtcgtaga 739
to top
>dbj|AK104199.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-A08, full
           insert sequence
          Length = 1060

 Score =  123 bits (62), Expect = 4e-25
 Identities = 86/94 (91%)
 Strand = Plus / Minus

                                                                       
Query: 270 aggaacaggttgaggatgtcgaggtaaagttcaacagaagcccagatgtactcgtcataa 329
           ||||||| |||||||||||| ||||| || |||||||| ||||| ||||| |||||||||
Sbjct: 832 aggaacaagttgaggatgtcaaggtagagctcaacagaggcccaaatgtagtcgtcataa 773

                                             
Query: 330 gtgtggcgctttatcaagttctcagtgtcgtaga 363
           ||||||||||||||||||||||| ||||||||||
Sbjct: 772 gtgtggcgctttatcaagttctctgtgtcgtaga 739
to top
>dbj|AK070043.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039E14, full
           insert sequence
          Length = 1106

 Score =  123 bits (62), Expect = 4e-25
 Identities = 86/94 (91%)
 Strand = Plus / Minus

                                                                       
Query: 270 aggaacaggttgaggatgtcgaggtaaagttcaacagaagcccagatgtactcgtcataa 329
           ||||||| |||||||||||| ||||| || |||||||| ||||| ||||| |||||||||
Sbjct: 833 aggaacaagttgaggatgtcaaggtagagctcaacagaggcccaaatgtagtcgtcataa 774

                                             
Query: 330 gtgtggcgctttatcaagttctcagtgtcgtaga 363
           ||||||||||||||||||||||| ||||||||||
Sbjct: 773 gtgtggcgctttatcaagttctctgtgtcgtaga 740
to top
>gb|BT016325.1| Zea mays clone Contig158 mRNA sequence
          Length = 1172

 Score =  107 bits (54), Expect = 3e-20
 Identities = 99/114 (86%)
 Strand = Plus / Minus

                                                                       
Query: 248 cctgagcatctgtaggatggtgaggaacaggttgaggatgtcgaggtaaagttcaacaga 307
           ||||||||| |  ||||||| |||||||||||| |||||||||||||| ||  |||| ||
Sbjct: 862 cctgagcatgttcaggatggagaggaacaggttcaggatgtcgaggtacagcccaaccga 803

                                                                 
Query: 308 agcccagatgtactcgtcataagtgtggcgctttatcaagttctcagtgtcgta 361
            ||||||||||||||||| || ||||||||||| |||| |||||| ||||||||
Sbjct: 802 cgcccagatgtactcgtcgtaggtgtggcgcttgatcaggttctcggtgtcgta 749
to top
>gb|AY104589.1| Zea mays PCO067801 mRNA sequence
          Length = 1197

 Score =  107 bits (54), Expect = 3e-20
 Identities = 99/114 (86%)
 Strand = Plus / Minus

                                                                       
Query: 248 cctgagcatctgtaggatggtgaggaacaggttgaggatgtcgaggtaaagttcaacaga 307
           ||||||||| |  ||||||| |||||||||||| |||||||||||||| ||  |||| ||
Sbjct: 908 cctgagcatgttcaggatggagaggaacaggttcaggatgtcgaggtacagcccaaccga 849

                                                                 
Query: 308 agcccagatgtactcgtcataagtgtggcgctttatcaagttctcagtgtcgta 361
            ||||||||||||||||| || ||||||||||| |||| |||||| ||||||||
Sbjct: 848 cgcccagatgtactcgtcgtaggtgtggcgcttgatcaggttctcggtgtcgta 795
to top
>ref|XM_367013.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein
           (MG03089.4) partial mRNA
          Length = 849

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 261 aggatggtgaggaacaggttgaggatgtcgaggta 295
           ||||||| |||||||||||||| ||||||||||||
Sbjct: 818 aggatggcgaggaacaggttgatgatgtcgaggta 784
to top
>gb|AC162030.8| Medicago truncatula clone mth2-178b21, complete sequence
          Length = 85986

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                         
Query: 270   aggaacaggttgaggatgtcgaggtaaagttcaacagaagcccagatgtactcgtcataa 329
             ||||||||||| || |||||||| |||||    ||||| ||||  ||||| || ||||||
Sbjct: 71398 aggaacaggttcagaatgtcgagataaagagtgacagaggccccaatgtattcatcataa 71457

                                                
Query: 330   gtgtggcgctttatcaagttctcagtgtcgtagac 364
             || |||||||| ||||  || ||||||||||||||
Sbjct: 71458 gtatggcgcttgatcagattgtcagtgtcgtagac 71492
to top
>ref|XM_748615.1| Aspergillus fumigatus Af293 hypothetical protein (Afu5g09310)
           partial mRNA
          Length = 846

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 270 aggaacaggttgaggatgtcgaggtaaag 298
           |||||||||||||||||||| ||||||||
Sbjct: 773 aggaacaggttgaggatgtccaggtaaag 745
to top
>emb|AJ879936.2| Capsicum chinense mRNA for putative receptor associated protein
           (ORF1)
          Length = 1037

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 308 agcccagatgtactcgtcataagtgtggcgctt 340
           ||||||||||||||| |||||||||| ||||||
Sbjct: 756 agcccagatgtactcatcataagtgtagcgctt 724
to top
>ref|NM_116196.1| Arabidopsis thaliana glutamate binding AT3G63310 mRNA, complete cds
          Length = 720

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 302 aacagaagcccagatgtactcgtcataagtgtggcgctttatcaagtt 349
           ||||| ||||||||||||||||||||| | ||| | ||| ||||||||
Sbjct: 651 aacagcagcccagatgtactcgtcataggagtgcctcttgatcaagtt 604
to top
>gb|BT020236.1| Arabidopsis thaliana At3g63310 gene, complete cds
          Length = 892

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 302 aacagaagcccagatgtactcgtcataagtgtggcgctttatcaagtt 349
           ||||| ||||||||||||||||||||| | ||| | ||| ||||||||
Sbjct: 741 aacagcagcccagatgtactcgtcataggagtgcctcttgatcaagtt 694
to top
>emb|AL163818.1|ATMAA21 Arabidopsis thaliana DNA chromosome 3, P1 clone MAA21 (ESSA project)
          Length = 79153

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                             
Query: 302   aacagaagcccagatgtactcgtcataagtgtggcgctttatcaagtt 349
             ||||| ||||||||||||||||||||| | ||| | ||| ||||||||
Sbjct: 10307 aacagcagcccagatgtactcgtcataggagtgcctcttgatcaagtt 10354
to top
>emb|AL138648.2|ATF16M2 Arabidopsis thaliana DNA chromosome 3, BAC clone F16M2
          Length = 75106

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                             
Query: 302   aacagaagcccagatgtactcgtcataagtgtggcgctttatcaagtt 349
             ||||| ||||||||||||||||||||| | ||| | ||| ||||||||
Sbjct: 55690 aacagcagcccagatgtactcgtcataggagtgcctcttgatcaagtt 55737
to top
>gb|BT021132.1| Arabidopsis thaliana At3g63310 gene, complete cds
          Length = 720

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 302 aacagaagcccagatgtactcgtcataagtgtggcgctttatcaagtt 349
           ||||| ||||||||||||||||||||| | ||| | ||| ||||||||
Sbjct: 651 aacagcagcccagatgtactcgtcataggagtgcctcttgatcaagtt 604
to top
>emb|BX470168.7| Zebrafish DNA sequence from clone CH211-288L20 in linkage group 6,
              complete sequence
          Length = 148605

 Score = 46.1 bits (23), Expect = 0.079
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 98     ggcctcatctctggatgatggca 120
              |||||||||||||||||||||||
Sbjct: 134372 ggcctcatctctggatgatggca 134350
to top
>emb|BX322791.7| Zebrafish DNA sequence from clone RP71-55E12, complete sequence
          Length = 127643

 Score = 46.1 bits (23), Expect = 0.079
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 98     ggcctcatctctggatgatggca 120
              |||||||||||||||||||||||
Sbjct: 113305 ggcctcatctctggatgatggca 113283
to top
>emb|BX825703.1|CNS0A67U Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL57ZF05 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 998

 Score = 46.1 bits (23), Expect = 0.079
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 302 aacagaagcccagatgtactcgtcata 328
           ||||| |||||||||||||||||||||
Sbjct: 769 aacagcagcccagatgtactcgtcata 743
to top
>gb|BT014369.1| Lycopersicon esculentum clone 133657R, mRNA sequence
          Length = 1241

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 303 acagaagcccagatgtactcgtcataagtgtggcgctt 340
           |||| ||||||||||||||| || ||||||| ||||||
Sbjct: 680 acagcagcccagatgtactcatcgtaagtgtagcgctt 643
to top
>gb|BT014225.1| Lycopersicon esculentum clone 133420R, mRNA sequence
          Length = 1133

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 308 agcccagatgtactcgtcataagtgt 333
           ||||||||||||||| ||||||||||
Sbjct: 729 agcccagatgtactcatcataagtgt 704
to top
>gb|AC159332.11| Mus musculus 6 BAC RP23-413D8 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 208808

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 91     gtactttggcctcatctctgga 112
              ||||||||||||||||||||||
Sbjct: 115436 gtactttggcctcatctctgga 115415
to top
>emb|CR388214.5| Zebrafish DNA sequence from clone CH211-269E4 in linkage group 21,
             complete sequence
          Length = 138978

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 21    tcactgattgtttgcagtttaa 42
             ||||||||||||||||||||||
Sbjct: 29900 tcactgattgtttgcagtttaa 29921
to top
>emb|AL954324.10| Zebrafish DNA sequence from clone DKEY-35P13 in linkage group 17,
             complete sequence
          Length = 69320

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 21    tcactgattgtttgcagtttaacaa 45
             ||||||||||||||||| |||||||
Sbjct: 60982 tcactgattgtttgcagattaacaa 60958
to top
>ref|XM_389598.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09422.1)
           partial mRNA
          Length = 831

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 270 aggaacaggttgaggatgtcgaggtaaag 298
           ||||| ||||||| |||||||||||||||
Sbjct: 791 aggaagaggttgatgatgtcgaggtaaag 763
to top
>emb|BX324123.4| Zebrafish DNA sequence from clone DKEY-106L3 in linkage group 10,
             complete sequence
          Length = 158061

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 20    atcactgattgtttgcagtttaaca 44
             |||||||||||||| ||||||||||
Sbjct: 69405 atcactgattgtttacagtttaaca 69381
to top
>gb|DQ397838.1| Cenarchaeum symbiosum clone C03H05, complete sequence
          Length = 39721

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 287   gtcgaggtaaagttcaacaga 307
             |||||||||||||||||||||
Sbjct: 32776 gtcgaggtaaagttcaacaga 32796
to top
>dbj|AB194635.1| Leek yellow stripe virus gene for coat protein, partial cds,
           isolate: Korea:Import.#2
          Length = 864

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 262 ggatggtgaggaacaggttga 282
           |||||||||||||||||||||
Sbjct: 468 ggatggtgaggaacaggttga 488
to top
>dbj|AB194634.1| Leek yellow stripe virus gene for coat protein, partial cds,
           isolate: Korea:Import.#1
          Length = 864

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 262 ggatggtgaggaacaggttga 282
           |||||||||||||||||||||
Sbjct: 468 ggatggtgaggaacaggttga 488
to top
>gb|AC007156.2|AC007156 Homo sapiens chromosome 18, clone hRPK.419_J_16, complete sequence
          Length = 203591

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 97     tggcctcatctctggatgatg 117
              |||||||||||||||||||||
Sbjct: 154447 tggcctcatctctggatgatg 154427
to top
>dbj|AP005271.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-752I5, complete
              sequence
          Length = 200108

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 97     tggcctcatctctggatgatg 117
              |||||||||||||||||||||
Sbjct: 116968 tggcctcatctctggatgatg 116988
to top
>gb|AC138769.4| Mus musculus chromosome 18 clone RP23-235B1, complete sequence
          Length = 189897

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    taaaggttggacatatgacc 194
              ||||||||||||||||||||
Sbjct: 143135 taaaggttggacatatgacc 143154
to top
>emb|AL672211.7| Zebrafish DNA sequence from clone BUSM1-6A2 in linkage group 11
             Contains a novel gene similar to OGFR, the fez gene for
             forebrain embryonic zinc-finger protein, part of a novel
             gene for a protein similar to Ca2+ dependent activator and
             four CpG islands, complete sequence
          Length = 80828

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 21    tcactgattgtttgcagtttaaca 44
             ||||||||||||| ||||||||||
Sbjct: 46648 tcactgattgtttacagtttaaca 46625
to top
>emb|CR450720.5| Zebrafish DNA sequence from clone DKEYP-51F11 in linkage group 2,
             complete sequence
          Length = 200950

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 21    tcactgattgtttgcagtttaaca 44
             ||||||||||||| ||||||||||
Sbjct: 81673 tcactgattgtttacagtttaaca 81696
to top
>gb|AF097907.1| Rana catesbeiana myosin heavy chain (MHC-4) mRNA, partial cds
          Length = 2584

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 261 aggatggtgaggaacaggttgagg 284
           |||||| |||||||||||||||||
Sbjct: 867 aggatgctgaggaacaggttgagg 890
to top
>gb|DQ397875.1| Cenarchaeum symbiosum clone C07F02, complete sequence
          Length = 41724

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 287 gtcgaggtaaagttcaacag 306
           ||||||||||||||||||||
Sbjct: 674 gtcgaggtaaagttcaacag 693
to top
>gb|DQ397873.1| Cenarchaeum symbiosum clone C13A11, complete sequence
          Length = 40499

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   gtcgaggtaaagttcaacag 306
             ||||||||||||||||||||
Sbjct: 33807 gtcgaggtaaagttcaacag 33788
to top
>gb|DQ397858.1| Cenarchaeum symbiosum clone C05G02, complete sequence
          Length = 39265

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 287  gtcgaggtaaagttcaacag 306
            ||||||||||||||||||||
Sbjct: 8802 gtcgaggtaaagttcaacag 8783
to top
>gb|DQ397630.1| Cenarchaeum symbiosum clone C01C08, complete sequence
          Length = 44451

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   gtcgaggtaaagttcaacag 306
             ||||||||||||||||||||
Sbjct: 41025 gtcgaggtaaagttcaacag 41006
to top
>gb|DQ060521.1| Bean yellow mosaic virus polyprotein mRNA, partial cds
          Length = 1630

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 262  ggatggtgaggaacaggttg 281
            ||||||||||||||||||||
Sbjct: 1062 ggatggtgaggaacaggttg 1081
to top
>emb|BX276115.11| Zebrafish DNA sequence from clone DKEY-274M17 in linkage group 11,
              complete sequence
          Length = 175216

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 21     tcactgattgtttgcagtttaaca 44
              ||||||||||||| ||||||||||
Sbjct: 169422 tcactgattgtttacagtttaaca 169445
to top
>emb|BX465842.5| Zebrafish DNA sequence from clone DKEY-164P3 in linkage group 3, complete
              sequence
          Length = 194224

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 21     tcactgattgtttgcagtttaaca 44
              |||||||||||||||| |||||||
Sbjct: 182372 tcactgattgtttgcaatttaaca 182395
to top
>gb|AC026736.4|AC026736 Homo sapiens chromosome 5 clone CTD-2350M8, complete sequence
          Length = 108661

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    acatattggttgtactttgg 99
             ||||||||||||||||||||
Sbjct: 99455 acatattggttgtactttgg 99474
to top
>emb|BX957241.13| Zebrafish DNA sequence from clone CH211-197N10 in linkage group 19,
              complete sequence
          Length = 199001

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 21     tcactgattgtttgcagtttaaca 44
              ||||||||||||| ||||||||||
Sbjct: 161444 tcactgattgtttacagtttaaca 161421
to top
>emb|BX276097.12| Zebrafish DNA sequence from clone DKEY-97C6 in linkage group 20,
             complete sequence
          Length = 128871

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 21    tcactgattgtttgcagtttaaca 44
             ||||||||||||| ||||||||||
Sbjct: 89708 tcactgattgtttacagtttaaca 89731
to top
>emb|AL954739.9| Zebrafish DNA sequence from clone CH211-192K9 in linkage group 20,
             complete sequence
          Length = 154604

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 21    tcactgattgtttgcagtttaaca 44
             ||||||||||||| ||||||||||
Sbjct: 17984 tcactgattgtttacagtttaaca 18007
to top
>emb|BX004994.6| Zebrafish DNA sequence from clone DKEY-24J15 in linkage group 22,
             complete sequence
          Length = 211945

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 21    tcactgattgtttgcagtttaaca 44
             ||||||||||||| ||||||||||
Sbjct: 73616 tcactgattgtttacagtttaaca 73639
to top
>emb|BX001024.7| Zebrafish DNA sequence from clone CH211-42I24, complete sequence
          Length = 169194

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 21   tcactgattgtttgcagtttaaca 44
            ||||||||||| ||||||||||||
Sbjct: 2555 tcactgattgtgtgcagtttaaca 2578


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,474,249
Number of Sequences: 3902068
Number of extensions: 2474249
Number of successful extensions: 54050
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53963
Number of HSP's gapped (non-prelim): 86
length of query: 367
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 345
effective length of database: 17,147,199,772
effective search space: 5915783921340
effective search space used: 5915783921340
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top