ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet25f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AKR2_ARATH (Q9SAR5) Ankyrin repeat domain-containing protein 2 (... 50 2e-06
2Y1745_ARATH (P59278) Protein At1g51745 28 7.6
3ZN161_HUMAN (Q14119) Zinc finger protein 161 (Putative transcrip... 27 9.9
4P100_HCMVA (P08318) Large structural phosphoprotein (pp150) (150... 27 9.9

>AKR2_ARATH (Q9SAR5) Ankyrin repeat domain-containing protein 2 (AtAKR2)|
          Length = 342

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 19/25 (76%), Positives = 24/25 (96%)
 Frame = -1

Query: 315 GGPSAMVKYWNDPEILQKIGEAMSL 241
           GGPSAM+KYWNDPE+L+K+GEAM +
Sbjct: 171 GGPSAMMKYWNDPEVLKKLGEAMGM 195



to top

>Y1745_ARATH (P59278) Protein At1g51745|
          Length = 597

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 7   SISFSTPRNIHDRCIDAIITPDSSHSE*LPRAWRWTKNRVA 129
           SIS S   +  DR  D  +T + +HSE  P A R +  R A
Sbjct: 357 SISVSAEDDSSDRLFDVPLTGEENHSEGFPAACRISSPRKA 397



to top

>ZN161_HUMAN (Q14119) Zinc finger protein 161 (Putative transcription factor|
           DB1)
          Length = 516

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +2

Query: 11  YHFQHQEIFTTGV*MQSSPLTAPTA---NSSPVHGDGQRTGLHSRI 139
           YH +  E   TG+ + S P   PT      S + GD  RT L S I
Sbjct: 87  YHLRRHESCHTGIKLVSRPKKTPTTVVPLISTIAGDSSRTSLVSTI 132



to top

>P100_HCMVA (P08318) Large structural phosphoprotein (pp150) (150 kDa matrix|
           phosphoprotein) (Basic phosphoprotein) (BPP) (Tegument
           protein UL32)
          Length = 1048

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +2

Query: 59  SSPLTAPTANSSPVHGDGQRTGLHSRIKPT 148
           +SP  A +A  SPV G G R G+ S +KPT
Sbjct: 877 ASPSPAKSAPPSPVKGRGSRVGVPS-LKPT 905


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,659,535
Number of Sequences: 219361
Number of extensions: 787631
Number of successful extensions: 2145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2144
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top