ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet25f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KSR2_HUMAN (Q6VAB6) Kinase suppressor of ras-2 (hKSR2) 30 1.8
2POPD2_MOUSE (Q9ES82) Popeye domain-containing protein 2 (Popeye ... 30 1.8
3ARGC_SYNPX (Q7U6S4) N-acetyl-gamma-glutamyl-phosphate reductase ... 30 3.1
4HISX_AZOBR (P18786) Putative histidinol dehydrogenase (EC 1.1.1.... 30 3.1
5KDPD_RATRA (O34971) Sensor protein kdpD (EC 2.7.13.3) 29 5.3
6ARGC_PROMM (Q7V7N1) N-acetyl-gamma-glutamyl-phosphate reductase ... 29 5.3
7MMPS3_MYCTU (P65378) Putative membrane protein mmpS3 29 5.3
8MMPS3_MYCBO (P65379) Putative membrane protein mmpS3 29 5.3
9LRP3_RAT (O88204) Low-density lipoprotein receptor-related prote... 28 6.9
10LRP3_HUMAN (O75074) Low-density lipoprotein receptor-related pro... 28 6.9
11PRLR_MOUSE (Q08501) Prolactin receptor precursor (PRL-R) 28 9.0

>KSR2_HUMAN (Q6VAB6) Kinase suppressor of ras-2 (hKSR2)|
          Length = 829

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 282 LPASSRSMYTVWSPPWQPEPITTTRPPG 365
           LP S R  + V +PP  P  +TT  PPG
Sbjct: 127 LPPSPRQRHAVRTPPRTPNIVTTVTPPG 154



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>POPD2_MOUSE (Q9ES82) Popeye domain-containing protein 2 (Popeye protein 2)|
          Length = 367

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +3

Query: 129 INIPLYTLSIVLYTGFS---DHIICGVDQISRKHAA*TCPENSGGAEARVQDAVLPASSR 299
           I+  LYTL+  L+  F    D  +  +  +    A+   PE+    E  ++ AV PA +R
Sbjct: 241 ISEKLYTLNDKLFAKFGLRFDIRLPSLYHVLSPSASDGEPESEKDDEEALEAAVSPAQAR 300

Query: 300 SMYTVWSPPWQPEPITTTRP 359
            +  V +PP    P TT  P
Sbjct: 301 PICIVPTPPCSAPPATTNFP 320



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>ARGC_SYNPX (Q7U6S4) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)|
           (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase)
           (NAGSA dehydrogenase)
          Length = 357

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 358 GRVVVIGSGCHGGDQTVYMLRDEAGKTASW 269
           GRV VIG+  +GG QT+ +L+D    T ++
Sbjct: 7   GRVAVIGASGYGGLQTIRLLQDHPSLTVTF 36



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>HISX_AZOBR (P18786) Putative histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
           (Fragment)
          Length = 128

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 54  GCYESSRHGAEKRGPRRRALMRHIRINIPLYTLSIVLYTGFSDHIICGV 200
           G ++  R G EK   RR     H+R +IPL  LS+  +T    H + G+
Sbjct: 68  GQHQQGREGQEKASGRR-----HVRCHIPLCALSV--HTTMHTHALSGI 109



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>KDPD_RATRA (O34971) Sensor protein kdpD (EC 2.7.13.3)|
          Length = 854

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
 Frame = +3

Query: 123 IRINIPLYTLSIVLYTGFSDHIICGVDQISRKH--AA*TCPENS-----GGAEARVQDAV 281
           + ++ PL+  ++ LY   +  +   VDQ +R+   A  +  E+       G+  R   A+
Sbjct: 445 VTVDKPLHLFALALYITIAMMVSYVVDQAARRTRVARRSAAESELLATIAGSVLRGDGAL 504

Query: 282 --LPASSRSMYTVWSPPWQPE--PITTTRPPG 365
             L + +R ++      W P   PIT TRPPG
Sbjct: 505 QSLVSRTRKVWVEGCDCWMPRVRPITPTRPPG 536



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>ARGC_PROMM (Q7V7N1) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)|
           (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase)
           (NAGSA dehydrogenase)
          Length = 357

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 376 VSAIPGGRVVVIGSGCHGGDQTVYMLRD 293
           +S + G RV VIG+  +GG QT+ +L D
Sbjct: 1   MSQVRGSRVAVIGATGYGGLQTIRLLED 28



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>MMPS3_MYCTU (P65378) Putative membrane protein mmpS3|
          Length = 299

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 282 LPASSRSMYTVWSPPWQPEPITTTRPPGMAETVDAVRASSGTDAT 416
           +P ++ +     +PP  P P TTT PP    T  A    + T  T
Sbjct: 165 IPTATETQTVTVTPPPPPPPATTTAPPPATTTTAAAPPPTTTTPT 209



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>MMPS3_MYCBO (P65379) Putative membrane protein mmpS3|
          Length = 299

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 282 LPASSRSMYTVWSPPWQPEPITTTRPPGMAETVDAVRASSGTDAT 416
           +P ++ +     +PP  P P TTT PP    T  A    + T  T
Sbjct: 165 IPTATETQTVTVTPPPPPPPATTTAPPPATTTTAAAPPPTTTTPT 209



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>LRP3_RAT (O88204) Low-density lipoprotein receptor-related protein 3|
           precursor (rLRp105)
          Length = 770

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 9/117 (7%)
 Frame = -1

Query: 415 VASVPEDARTASTVSAIPGGRVVVIGSGCHGGDQTVYMLRDEAGKT---------ASWTR 263
           +A+VP    TA+ + ++  G ++VI  GC      +Y LR +  +          A + R
Sbjct: 490 LAAVPRKVITAALIGSLVCGLLLVIALGC---AFKLYSLRTQEYRAFETQMTRLEAEFVR 546

Query: 262 ASAPPEFSGHVQAACFLEI*STPHMM*SLKPVYRTMDSVYRGIFMRI*RINARRRGP 92
             APP +   +       +   P    S   V + + +  R    R  R +A RRGP
Sbjct: 547 REAPPSYGQLIAQGLIPPVEDFPVYSASQASVLQNLRTAMR----RQMRRHASRRGP 599



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>LRP3_HUMAN (O75074) Low-density lipoprotein receptor-related protein 3|
           precursor (hLRp105)
          Length = 770

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 9/117 (7%)
 Frame = -1

Query: 415 VASVPEDARTASTVSAIPGGRVVVIGSGCHGGDQTVYMLRDEAGKT---------ASWTR 263
           +A+VP    TA+ + ++  G ++VI  GC      +Y LR +  +          A + R
Sbjct: 490 LAAVPRKVITAALIGSLVCGLLLVIALGC---AFKLYSLRTQEYRAFETQMTRLEAEFVR 546

Query: 262 ASAPPEFSGHVQAACFLEI*STPHMM*SLKPVYRTMDSVYRGIFMRI*RINARRRGP 92
             APP +   +       +   P    S   V + + +  R    R  R +A RRGP
Sbjct: 547 REAPPSYGQLIAQGLIPPVEDFPVYSASQASVLQNLRTAMR----RQMRRHASRRGP 599



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>PRLR_MOUSE (Q08501) Prolactin receptor precursor (PRL-R)|
          Length = 608

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 240 ENSGGAEARVQDAVLPASSRSMYTVWSPPWQPEPITTTRPPGMAE 374
           E++G  E  VQ+      S    T W P  +  PI   +PP   E
Sbjct: 454 EDAGEEEVAVQEGAKSFPSDKQNTSWPPLQEKGPIVYAKPPDYVE 498


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,682,548
Number of Sequences: 219361
Number of extensions: 1004803
Number of successful extensions: 3152
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3151
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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